Gene Details:
- Gene ID: AT3G19360
- Gene Symbol: AtC3H39
- Gene Name:
- Description: Zinc finger (CCCH-type) family protein;(source:Araport11)
- TAIR Accession: locus:2090669
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Gene Ontology:
- GO:0006355 — acts upstream of or within — regulation of DNA-templated transcription
- GO:0005634 — located in — nucleus
- GO:0003729 — enables — mRNA binding
- GO:0003700 — enables — DNA-binding transcription factor activity
Function-related keywords:
Literature:
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications. DOI: 10.1101/gr.2544504 ; PMID: 15489341
- Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit. DOI: 10.1104/pp.105.070672 ; PMID: 16500995
- Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice. DOI: 10.1186/1471-2164-9-44 ; PMID: 18221561
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
Sequences:
cDNA Sequence
- >AT3G19360.2
CGATTACGTAATTTATTCACTATTCATCAGTTTCTTAATCCAAAAGAAAAAAAAGAAGAAGATAAAGAGGTATTTATATATCAGATGTTCAAAAACCCTAAATCGCGTTTCTTCTCTCAAATCTGCCGCCGCCATCATTGATCCAGGTATTGCTCTAACCTTGACTCTTCACGTCATTCGCATATTACTCTCCTCCTCGCTGATCCATTCGAATTCTGCACTCAAATCGTGTTTTTGTACATCATAGTTTCAAGCATTATGATTCTCTCTAGCCAATGACTTTTCTTGCGATTGAATCCTTTTGCAGTCTCGTTATCAAAAGTTGAAGAATTTAGTTTAGTTTGGTTGTGTAGATAAGATTTGTAATCGCAAAATTCGATCTTTGTTACAGTTATGGATTCGAGTTACTCTGATTCTCGTCCCATGTTCGTGCAATCACCTTATGGTGGTTGGAATCAAACACAGATGATTGATTCAATGGCTAATCCAATGAACAATGAACAAGGAGACTTGCATTCACTATCTGAATCACAATCACAATCTCAACCGTCTCAGCAATTACAGCCTGCATTGAAAAGGCCTAGACTTGTTGATGATAACTTGTTTAATCCTGCTTCGTCGTTTCCTCAGCCTTCGAGTAGCAATCCTTGGATGGTTCCATCTTTGAACCCTCCTCCTGTGAACAAAGGGACTGCTAATATATTCTATAAGACTAGAATGTGTGCTAAATTCAGGGCAGGGACTTGTAGGAATGGTGAACTCTGTAATTTTGCTCATGGGATTGAGGATTTGAGGCAGCCTCCGTCGAATTGGCAGGAAATTGTTGGACCTCCTCCTGCTGGTCAAGACAGGGAGAGGGAGAGAGAGAGGGAAAGGGAGAGGGAAAGACCGTCTTTGGCGCCTGTTGTGAATAATAATTGGGAAGATGATCAGAAGATAATCTTGAGGATGAAGCTTTGTAGGAAGTTTTGTTTTGGGGAAGAGTGTCCTTATGGGGACAGGTGCAATTTTATTCATGAGGATCTGTCAAAGTTTCGTGAGGACTCGGGGAAGTTGAGAGAGAGCTCGGTTATAAGTGTTGGTGCTACTGCTGCTGATCAACCATCTGATACTGCTTCTAATCTTATTGAAGTAAATAGACAAGGAAGCATCCCGGTACCTGCACCTATGAACAATGGTGGTGTTGTCAAGACTGTGTACTGGAAGACGAGGTTGTGCATGAAGTTTGACATCACGGGTCAATGTCCTTTTGGCGATAAGTGTCACTTTGCTCATGGCCAAGCAGAGTTGCATAACTCTGTTGGAAGGGTAGAAGGAGAAGCTATGAACGCGGTAGCGTCTGTGAATAAACAAGCAGTGGTACCTGCGAATGAAGCATTTGCAATGAAACCGATTACACAAGTAACAGCAGATTCCTCTGGTCTGAATGAAGAAGGGCGGCGAAAGAAGTGTTTGCTCAAGTGGAGCGACTCCAAGAAGATTAACCGAATATATGGAGACTGGATCGATGATTTACCGGTGGGTCAAAAGTCGACAAAGCCAGTAGAGAGTTGAGTTTTCTAGCCTGGTTTCATTTGTCTCGTCCTTTTGATGATCAAAACTGATAAAGCTTTGGTCGAAAATTTTGAAGAGTAGAAACACTCTTTATTTTGTTCATTAGCAATTCTTTGATTCGCTATAGCTTAGAATATTGCTTTTGTTATAATCTTTGATTACACAAAAAAAGTGGCTTGGCTCACTAATAGCATCTTATTCTTAATTTGTTTCCTTTGGCTTCTAATGTTCATCATTATATGGATAGGTTTCGTATTTCGTTTGCCTTTTAATGTTCTAACGAATCGGAAGAGATATAGAAGGAATTGGGC - >AT3G19360.1
CGATTACGTAATTTATTCACTATTCATCAGTTTCTTAATCCAAAAGAAAAAAAAGAAGAAGATAAAGAGGTATTTATATATCAGATGTTCAAAAACCCTAAATCGCGTTTCTTCTCTCAAATCTGCCGCCGCCATCATTGATCCAGGTATTGCTCTAACCTTGACTCTTCACGTCATTCGCATATTACTCTCCTCCTCGCTGATCCATTCGAATTCTGCACTCAAATCGTGTTTTTGTACATCATAGTTTCAAGCATTATGATTCTCTCTAGCCAATGACTTTTCTTGCGATTGAATCCTTTTGCAGTCTCGTTATCAAAAGTTGAAGAATTTAGTTTAGTTTGGTTGTGTAGATAAGATTTGTAATCGCAAAATTCGATCTTTGTTACAGTTATGGATTCGAGTTACTCTGATTCTCGTCCCATGTTCGTGCAATCACCTTATGGTGGTTGGAATCAAACACAGATGATTGATTCAATGGCTAATCCAATGAACAATGAACAAGGAGACTTGCATTCACTATCTGAATCACAATCACAATCTCAACCGTCTCAGCAATTACAGCCTGCATTGAAAAGGCCTAGACTTGTTGATGATAACTTGTTTAATCCTGCTTCGTCGTTTCCTCAGCCTTCGAGTAGCAATCCTTGGATGGTTCCATCTTTGAACCCTCCTCCTGTGAACAAAGGGACTGCTAATATATTCTATAAGACTAGAATGTGTGCTAAATTCAGGGCAGGGACTTGTAGGAATGGTGAACTCTGTAATTTTGCTCATGGGATTGAGGATTTGAGGCAGCCTCCGTCGAATTGGCAGGAAATTGTTGGACCTCCTCCTGCTGGTCAAGACAGGGAGAGGGAGAGAGAGAGGGAAAGGGAGAGGGAAAGACCGTCTTTGGCGCCTGTTGTGAATAATAATTGGGAAGATGATCAGAAGATAATCTTGAGGATGAAGCTTTGTAGGAAGTTTTGTTTTGGGGAAGAGTGTCCTTATGGGGACAGGTGCAATTTTATTCATGAGGATCTGTCAAAGTTTCGTGAGGACTCGGGGAAGTTGAGAGAGAGCTCGGTTATAAGTGTTGGTGCTACTGCTGCTGATCAACCATCTGATACTGCTTCTAATCTTATTGAAGTAAATAGACAAGGAAGCATCCCGGTACCTGCACCTATGAACAATGGTGGTGTTGTCAAGACTGTGTACTGGAAGACGAGGTTGTGCATGAAGTTTGACATCACGGGTCAATGTCCTTTTGGCGATAAGTGTCACTTTGCTCATGGCCAAGCAGAGTTGCATAACTCTGTTGGAAGGGTAGAAGGAGAAGCTATGAACGCGGTAGCGTCTGTGAATAAACAAGCAGTGGTACCTGCGAATGAAGCATTTGCAATGAAACCGATTACACAAGTAACAGCAGATTCCTCTGGTCTGAATGAAGAAGGGCGGCGAAAGAAGTGTTTGCTCAAGTGGAGCGACTCCAAGAAGATTAACCGAATATATGGAGACTGGATCGATGATTTACCGGTGGGTCAAAAGTCGACAAAGCCAGTAGAGAGTTGAGTTTTCTAGCCTGGTTTCATTTGTCTCGTCCTTTTGATGATCAAAACTGATAAAGCTTTGGTCGAAAATTTTGAAGAGTAGAAACACTCTTTATTTTGTTCATTAGCAATTCTTTGATTCGCTATAGCTTAGAATATTGCTTTTGTTATAATCTTTGATTACACAAAAAAAGTGGCTTGGCTCACTAATAGCATCTTATTCTTAATTTGTTTCCTTTGGCTTCTAATGTTCATCATTATATGGATAGGTTTCGTATTTCGTTTGCCTTTTAATGTTCTAACGAATCGGAAGAGATATAGAAGGAATTGGGC
CDS Sequence
- >AT3G19360.2
ATGGATTCGAGTTACTCTGATTCTCGTCCCATGTTCGTGCAATCACCTTATGGTGGTTGGAATCAAACACAGATGATTGATTCAATGGCTAATCCAATGAACAATGAACAAGGAGACTTGCATTCACTATCTGAATCACAATCACAATCTCAACCGTCTCAGCAATTACAGCCTGCATTGAAAAGGCCTAGACTTGTTGATGATAACTTGTTTAATCCTGCTTCGTCGTTTCCTCAGCCTTCGAGTAGCAATCCTTGGATGGTTCCATCTTTGAACCCTCCTCCTGTGAACAAAGGGACTGCTAATATATTCTATAAGACTAGAATGTGTGCTAAATTCAGGGCAGGGACTTGTAGGAATGGTGAACTCTGTAATTTTGCTCATGGGATTGAGGATTTGAGGCAGCCTCCGTCGAATTGGCAGGAAATTGTTGGACCTCCTCCTGCTGGTCAAGACAGGGAGAGGGAGAGAGAGAGGGAAAGGGAGAGGGAAAGACCGTCTTTGGCGCCTGTTGTGAATAATAATTGGGAAGATGATCAGAAGATAATCTTGAGGATGAAGCTTTGTAGGAAGTTTTGTTTTGGGGAAGAGTGTCCTTATGGGGACAGGTGCAATTTTATTCATGAGGATCTGTCAAAGTTTCGTGAGGACTCGGGGAAGTTGAGAGAGAGCTCGGTTATAAGTGTTGGTGCTACTGCTGCTGATCAACCATCTGATACTGCTTCTAATCTTATTGAAGTAAATAGACAAGGAAGCATCCCGGTACCTGCACCTATGAACAATGGTGGTGTTGTCAAGACTGTGTACTGGAAGACGAGGTTGTGCATGAAGTTTGACATCACGGGTCAATGTCCTTTTGGCGATAAGTGTCACTTTGCTCATGGCCAAGCAGAGTTGCATAACTCTGTTGGAAGGGTAGAAGGAGAAGCTATGAACGCGGTAGCGTCTGTGAATAAACAAGCAGTGGTACCTGCGAATGAAGCATTTGCAATGAAACCGATTACACAAGTAACAGCAGATTCCTCTGGTCTGAATGAAGAAGGGCGGCGAAAGAAGTGTTTGCTCAAGTGGAGCGACTCCAAGAAGATTAACCGAATATATGGAGACTGGATCGATGATTTACCGGTGGGTCAAAAGTCGACAAAGCCAGTAGAGAGTTGA - >AT3G19360.1
ATGGATTCGAGTTACTCTGATTCTCGTCCCATGTTCGTGCAATCACCTTATGGTGGTTGGAATCAAACACAGATGATTGATTCAATGGCTAATCCAATGAACAATGAACAAGGAGACTTGCATTCACTATCTGAATCACAATCACAATCTCAACCGTCTCAGCAATTACAGCCTGCATTGAAAAGGCCTAGACTTGTTGATGATAACTTGTTTAATCCTGCTTCGTCGTTTCCTCAGCCTTCGAGTAGCAATCCTTGGATGGTTCCATCTTTGAACCCTCCTCCTGTGAACAAAGGGACTGCTAATATATTCTATAAGACTAGAATGTGTGCTAAATTCAGGGCAGGGACTTGTAGGAATGGTGAACTCTGTAATTTTGCTCATGGGATTGAGGATTTGAGGCAGCCTCCGTCGAATTGGCAGGAAATTGTTGGACCTCCTCCTGCTGGTCAAGACAGGGAGAGGGAGAGAGAGAGGGAAAGGGAGAGGGAAAGACCGTCTTTGGCGCCTGTTGTGAATAATAATTGGGAAGATGATCAGAAGATAATCTTGAGGATGAAGCTTTGTAGGAAGTTTTGTTTTGGGGAAGAGTGTCCTTATGGGGACAGGTGCAATTTTATTCATGAGGATCTGTCAAAGTTTCGTGAGGACTCGGGGAAGTTGAGAGAGAGCTCGGTTATAAGTGTTGGTGCTACTGCTGCTGATCAACCATCTGATACTGCTTCTAATCTTATTGAAGTAAATAGACAAGGAAGCATCCCGGTACCTGCACCTATGAACAATGGTGGTGTTGTCAAGACTGTGTACTGGAAGACGAGGTTGTGCATGAAGTTTGACATCACGGGTCAATGTCCTTTTGGCGATAAGTGTCACTTTGCTCATGGCCAAGCAGAGTTGCATAACTCTGTTGGAAGGGTAGAAGGAGAAGCTATGAACGCGGTAGCGTCTGTGAATAAACAAGCAGTGGTACCTGCGAATGAAGCATTTGCAATGAAACCGATTACACAAGTAACAGCAGATTCCTCTGGTCTGAATGAAGAAGGGCGGCGAAAGAAGTGTTTGCTCAAGTGGAGCGACTCCAAGAAGATTAACCGAATATATGGAGACTGGATCGATGATTTACCGGTGGGTCAAAAGTCGACAAAGCCAGTAGAGAGTTGA
Protein Sequence
- >AT3G19360.2
MDSSYSDSRPMFVQSPYGGWNQTQMIDSMANPMNNEQGDLHSLSESQSQSQPSQQLQPALKRPRLVDDNLFNPASSFPQPSSSNPWMVPSLNPPPVNKGTANIFYKTRMCAKFRAGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERERERERERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAELHNSVGRVEGEAMNAVASVNKQAVVPANEAFAMKPITQVTADSSGLNEEGRRKKCLLKWSDSKKINRIYGDWIDDLPVGQKSTKPVES - >AT3G19360.1
MDSSYSDSRPMFVQSPYGGWNQTQMIDSMANPMNNEQGDLHSLSESQSQSQPSQQLQPALKRPRLVDDNLFNPASSFPQPSSSNPWMVPSLNPPPVNKGTANIFYKTRMCAKFRAGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERERERERERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAELHNSVGRVEGEAMNAVASVNKQAVVPANEAFAMKPITQVTADSSGLNEEGRRKKCLLKWSDSKKINRIYGDWIDDLPVGQKSTKPVES