Gene Details:
- Gene ID: AT3G19220
- Gene Symbol: CYO1, SCO2
- Gene Name: SHI-YO-U MEANS COTYLEDON IN JAPANESE, SNOWY COTYLEDON 2
- Description: protein disulfide isomerase;(source:Araport11)
- TAIR Accession: locus:2094093
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Gene Ontology:
- GO:0009535 — located in — chloroplast thylakoid membrane
- GO:0003756 — enables — protein disulfide isomerase activity
- GO:0043621 — enables — protein self-association
- GO:0009658 — acts upstream of or within — chloroplast organization
- GO:0005515 — enables — protein binding
- GO:0009507 — located in — chloroplast
Germplasm Phenotype:
- CS68145 — Pale cotyledons and green true leaves in 14 day-old seedlings; however, upon precocious germination, seedlings of sco2 and wild-type are indistinguishable. Reduced survival rate upon exposure to an extended period of etiolation compared to wild-type.
- cyo1 — Albino cotyledons, abnormal chloroplast biogenesis. True leaves are not affected, chloroplast development during embryo biogenesis is not affected. Affected in photomorphogenesis after prolonged skotomorphogenesis (after 4 days in dark unable to undergo photomorphogenesis).
- sco2-1 — Albino cotyledons, abnormal chloroplast biogenesis. True leaves are not affected, chloroplast development during embryo biogenesis is not affected. Affected in photomorphogenesis after prolonged skotomorphogenesis (after 4 days in dark unable to undergo photomorphogenesis).
- sco2-2 — Albino cotyledons, abnormal chloroplast biogenesis. True leaves are not affected, chloroplast development during embryo biogenesis is not affected. Affected in photomorphogenesis after prolonged skotomorphogenesis (after 4 days in dark unable to undergo photomorphogenesis).
Literature:
- Snowy cotyledon 2: the identification of a zinc finger domain protein essential for chloroplast development in cotyledons but not in true leaves. DOI: 10.1007/s11103-008-9291-y ; PMID: 18209955
- Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. DOI: 10.1104/pp.110.168120 ; PMID: 21139083
- Oxidative folding in chloroplasts. DOI: 10.1089/ars.2012.4582 ; PMID: 23289792
- Identification and Roles of Photosystem II Assembly, Stability, and Repair Factors in Arabidopsis. DOI: 10.3389/fpls.2016.00168 ; PMID: 26909098
Sequences:
cDNA Sequence
- >AT3G19220.1
GGTTGATTACTTCACCCAATTTCATGGCCGCACCTGCAAACTTCTCGTCTCAATGTTCCGATTATACCCTAATTGCTCTCTGCCTTCTCACAGACCTCTCGTTTTCCTTCCTCGTCTTCCTTCTCGCTCCCTCCGTTGCCGCGCCGCCGCTGATATTCCCCTTGGTGACGGAATCCGATTACCTCGAGAAGCGGATTCAACCTCTGACACGGCGAGGTCTCGGGATGTTTCCGTCGCCGCCGGTGGGAATGGTGAAGGTGCTAAGTGGAGGAAGAGGAGGTTGCTCTGGTCGAAAAGTGGAGAGAGTTACTTGGTAGATGATGGCGACGCGCTTCCTCTTCCTATGACTTATCCTGATACATCCCCTGTGTCGCCGGATGTGATTGACCGGAGGTTGCAATGTGATCCTGTAGTCGAGGATTGCCGGGAAGTGGTTTATGAATGGACTGGAAAGTGTAGAAGTTGCCAAGGATCTGGAACTGTCAGCTATTACAAGAAAAGGGGTAAAGAGGTTATATGCAAATGCATACCCTGCCAAGGGATAGGATATGTGCAGAAGATAACATCTCGGACGGACATTGAAGTGATGGAAGATTTGGATAATGAACCATCTTGACCTTGAATATGGCCCATTTTTGCATGTAAGCTTGGGTTCGTTATTGAAGTGTATCCGTTGCACGTACAAAACTATAACCAGAAGAGAGATAAGTGCTTCTTTGGGATGTTTGGCCCAAACAAGCTGATCGGAGGTATAGACAAAAACTACTGATTCTTGCTCAGATAATGGCTTCTTCTTTCACCAATAGTCCCCATATAGGCAATTTCTGTTTTATATGTATCAGACCTCGAGACACCACGAACTGCAGGAATTGTTTGTGTTTTTAGGCTGTTTCAGTCTGACTTATGTACATCAAGAGAAAAGATAGCTGTAACACGATCCATTTAATTATCTTTGTGTGCTTTACCTCTTGGTTCAAGTT
CDS Sequence
- >AT3G19220.1
ATGTTCCGATTATACCCTAATTGCTCTCTGCCTTCTCACAGACCTCTCGTTTTCCTTCCTCGTCTTCCTTCTCGCTCCCTCCGTTGCCGCGCCGCCGCTGATATTCCCCTTGGTGACGGAATCCGATTACCTCGAGAAGCGGATTCAACCTCTGACACGGCGAGGTCTCGGGATGTTTCCGTCGCCGCCGGTGGGAATGGTGAAGGTGCTAAGTGGAGGAAGAGGAGGTTGCTCTGGTCGAAAAGTGGAGAGAGTTACTTGGTAGATGATGGCGACGCGCTTCCTCTTCCTATGACTTATCCTGATACATCCCCTGTGTCGCCGGATGTGATTGACCGGAGGTTGCAATGTGATCCTGTAGTCGAGGATTGCCGGGAAGTGGTTTATGAATGGACTGGAAAGTGTAGAAGTTGCCAAGGATCTGGAACTGTCAGCTATTACAAGAAAAGGGGTAAAGAGGTTATATGCAAATGCATACCCTGCCAAGGGATAGGATATGTGCAGAAGATAACATCTCGGACGGACATTGAAGTGATGGAAGATTTGGATAATGAACCATCTTGA
Protein Sequence
- >AT3G19220.1
MFRLYPNCSLPSHRPLVFLPRLPSRSLRCRAAADIPLGDGIRLPREADSTSDTARSRDVSVAAGGNGEGAKWRKRRLLWSKSGESYLVDDGDALPLPMTYPDTSPVSPDVIDRRLQCDPVVEDCREVVYEWTGKCRSCQGSGTVSYYKKRGKEVICKCIPCQGIGYVQKITSRTDIEVMEDLDNEPS