Gene Details:

• Gene ID: AT3G19210
• Gene Symbol: ATRAD54, CHR25, RAD54
• Gene Name: homolog of RAD54, homolog of RAD54
• Description: DNA repair/recombination protein;(source:Araport11)
• TAIR Accession: locus:2094083
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT3G19210.1     AT3G19210.2     AT3G19210.3

Plant Ontology Annotations:

• PO:0005660  — hydathode — hidatodo (Spanish, exact), 排水組織 (Japanese, exact)
• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0009074  — style — estilo (Spanish, exact), 花柱 (Japanese, exact), Poaceae style (narrow)
• PO:0020038  — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)

Gene Ontology:

• GO:0005515  — enables — protein binding
• GO:0005634  — is active in — nucleus
• GO:0045003  — acts upstream of or within — double-strand break repair via synthesis-dependent strand annealing
• GO:0045003  — involved in — double-strand break repair via synthesis-dependent strand annealing
• GO:0007131  — involved in — reciprocal meiotic recombination
• GO:0071248  — involved in — cellular response to metal ion
• GO:0015616  — enables — DNA translocase activity
• GO:0005634  — located in — nucleus
• GO:0000724  — acts upstream of or within — double-strand break repair via homologous recombination
• GO:0051701  — involved in — biological process involved in interaction with host
• GO:0071480  — involved in — cellular response to gamma radiation
• GO:0010332  — acts upstream of or within — response to gamma radiation

Germplasm Phenotype:

• SALK_038057C  — Increased sensitivity to gamma radiation and the cross-linking reagent cisplatin. Reduced efficiency of somatic homologous recombination.

Function-related keywords:

• hydathode ,  root ,  style ,  petiole

Literature:

• A transcriptome-based characterization of habituation in plant tissue culture.   DOI:  10.1104/pp.105.076059 ;  PMID:  16489130
• Involvement of the Arabidopsis SWI2/SNF2 chromatin remodeling gene family in DNA damage response and recombination.   DOI:  10.1534/genetics.105.051664 ;  PMID:  16547115
• Isolation and characterization of the RAD54 gene from Arabidopsis thaliana.   DOI:  10.1111/j.1365-313X.2006.02927.x ;  PMID:  17227544
• Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.   DOI:  10.1093/molbev/msq204 ;  PMID:  20736450
• The requirement for recombination factors differs considerably between different pathways of homologous double-strand break repair in somatic plant cells.   DOI:  10.1111/j.1365-313X.2012.05119.x ;  PMID:  22860689
• A pivotal role of the jasmonic acid signal pathway in mediating radiation-induced bystander effects in Arabidopsis thaliana.   DOI:  10.1016/j.mrfmmm.2016.07.002 ;  PMID:  27497090
• Effect of modeled microgravity on radiation-induced adaptive response of root growth in Arabidopsis thaliana.   DOI:  10.1016/j.mrfmmm.2017.02.002 ;  PMID:  28254518
• LSD1-LIKE1-Mediated H3K4me2 Demethylation Is Required for Homologous Recombination Repair.   DOI:  10.1104/pp.19.00530 ;  PMID:  31366719
• RAD54 is essential for RAD51-mediated repair of meiotic DSB in Arabidopsis.   DOI:  10.1371/journal.pgen.1008919 ;  PMID:  34003859
• Different DNA repair pathways are involved in single-strand break-induced genomic changes in plants.   DOI:  10.1093/plcell/koab204 ;  PMID:  34375428
• The plant-specific DDR factor SOG1 increases chromatin mobility in response to DNA damage.   DOI:  10.15252/embr.202254736 ;  PMID:  36278395
• Isolation and characterization of the RAD54 gene from Arabidopsis thaliana.   DOI:  10.1111/j.1365-313X.2006.02927.x ;  PMID:  17227544

Sequences: