Information report for AT3G19130
Gene Details
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Functional Descriptions
- PO:0000005 — cultured plant cell — célula cultivada (Spanish, exact), 培養植物細胞 (Japanese, exact), cell suspension (related), cultured cell (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- GO:0005634 — located in — nucleus
- GO:0008143 — enables — poly(A) binding
- GO:0005829 — located in — cytosol
- GO:0003729 — enables — mRNA binding
- GO:0034605 — involved in — cellular response to heat
- GO:0010494 — located in — cytoplasmic stress granule
- GO:0034063 — acts upstream of or within — stress granule assembly
- GO:0005829 — is active in — cytosol
- GO:0005515 — enables — protein binding
Functional Keywords
Literature and News
- RBP45 and RBP47, two oligouridylate-specific hnRNP-like proteins interacting with poly(A)+ RNA in nuclei of plant cells. DOI: 10.1017/s1355838200001163 ; PMID: 11105760
- Exploiting the wild crucifer Thlaspi arvense to identify conserved and novel genes expressed during a plant's response to cold stress. DOI: 10.1007/s11103-006-9080-4 ; PMID: 16972165
- Phylogenetic and expression analysis of RNA-binding proteins with triple RNA recognition motifs in plants. DOI: 10.1007/s10059-011-0001-2 ; PMID: 21120628
- Tudor staphylococcal nuclease links formation of stress granules and processing bodies with mRNA catabolism in Arabidopsis. DOI: 10.1105/tpc.114.134494 ; PMID: 25736060
- Protein and metabolite composition of Arabidopsis stress granules. DOI: 10.1111/nph.15690 ; PMID: 30664249
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Arabidopsis CALMODULIN-LIKE 38 Regulates Hypoxia-Induced Autophagy of SUPPRESSOR OF GENE SILENCING 3 Bodies. DOI: 10.3389/fpls.2021.722940 ; PMID: 34567037
- The U1 snRNP component RBP45d regulates temperature-responsive flowering in Arabidopsis. DOI: 10.1093/plcell/koab273 ; PMID: 34791475
Gene Resources
- UniProt: A0A178VAC7
- EMBL: LR881468, LUHQ01000003
- AlphaFoldDB: A0A178VAC7
- EnsemblPlants: AT3G19130.1
- Gramene: AT3G19130.1
- KEGG: ath:AT3G19130
- Orthologous matrix: QVCEVEN
- ExpressionAtlas: AT3G19130
- InterPro: IPR000504, IPR012677, IPR035979
- PANTHER: PTHR47640, PTHR47640:SF9
- SUPFAM: SSF54928
- PROSITE: PS50102
- Gene3D: 3.30.70.330
- SWISS-MODEL: A0A178VAC7
- Conserved Domain Database: cd12344, cd12345
Homologs
- Beta vulgaris BVRB_3g054450
- Brassica napus GSBRNA2T00136766001
- Brassica rapa Brara.C00787
- Manihot esculenta MANES_15G001500, MANES_03G206500
- Oryza sativa RBP-L, RNP29, OsCRP1, LGG
- Prunus persica PRUPE_2G196200
- Raphanus raphanistrum RrC20665_p1
- Rosa chinensis RchiOBHm_Chr1g0360911
- Saccharum spontaneum Sspon.08G0005280-2B
Sequences
cDNA Sequence
- >AT3G19130.1
CGTAAATGGGCCCCACGTTTCGGCCACTTCCCCAAGACCCATTGTTTCAGCCTTAAACCCATTAACTCACTTCTCTCTCTCTCTCTCCGCCTCCTTTTAAGACCAAATCTCTCTCTACCTCTATCTCTCTCTCCGCCATTACCAGAGCTCAACGAGCTCTCACTTTCTTTACGCACACTTGTTGGAACGAAATATATTCATAGAGAAGAAGAATCTCGAAACTCTTGAATCTAAAACAACTCGGAGACTCTGTTTTCCCTTTCCGGAGATCAGATCGGATCAAGATGCAGACAACCAACGGCTCAGATTCGACGTTGGCAACTTCCGGAGCCACACCGCCGAATCAACAAACCCCTCCTCCACCTCAGCAGTGGCAGCAGCAGCAACAGCAACAGCAACAGTGGATGGCTGCCATGCAATATCCACCAGCGGCGGCGATGATGATGATGCAGCAGCAACAGATGCTGATGTATCCTCATCAATATGTTCCGTATAATCAAGGTCCTTATCAGCAGCATCATCCTCAGCTTCACCAATACGGGTCTTATCAACAGCACCAGCACCAGCAACACAAGGCTATTGACCGTGGATCTGGAGATGATGTCAAGACTCTTTGGGTTGGTGATCTTCTTCATTGGATGGATGAGACTTATCTCCATTCTTGCTTTTCTCACACCGGCGAGGTTTCTTCTGTGAAAGTTATACGTAACAAGCTCACTTCTCAATCAGAAGGGTATGGGTTTGTTGAGTTTCTTTCACGTGCTGCAGCTGAAGAAGTTCTTCAGAACTATAGTGGTTCAGTGATGCCAAACTCGGACCAACCCTTCCGTATAAACTGGGCATCTTTTAGTACTGGTGAAAAAAGAGCAGTGGAAAATGGTCCAGACCTATCTGTTTTTGTGGGAGACTTGTCTCCAGATGTCACTGACGTTTTATTGCATGAGACCTTTTCTGATAGATATCCTTCTGTCAAAAGCGCCAAAGTTGTGATTGATTCCAACACCGGCCGGTCCAAAGGTTATGGTTTTGTGAGGTTCGGTGATGAAAATGAGAGGTCAAGGGCTTTGACAGAAATGAATGGAGCTTACTGTTCGAACAGGCAAATGCGTGTAGGTATTGCAACTCCCAAAAGAGCGATTGCTAATCAGCAACAACATTCTTCACAAGCTGTGATTCTGGCTGGTGGACATGGATCAAATGGTTCCATGGGTTATGGCTCGCAGTCTGATGGCGAATCAACTAACGCAACAATATTTGTTGGCGGCATTGACCCTGATGTTATTGATGAAGACCTCAGACAACCTTTTTCCCAGTTTGGAGAGGTTGTTTCAGTGAAGATCCCAGTAGGGAAAGGATGTGGATTTGTCCAATTTGCTGACAGGAAGAGTGCTGAAGATGCTATCGAGAGTTTGAACGGGACAGTCATCGGCAAGAACACTGTCAGACTCTCCTGGGGACGAAGCCCAAACAAGCAGTGGAGAGGAGACTCAGGGCAGCAGTGGAATGGAGGATACTCACGAGGACATGGTTACAACAATGGAGGAGGATATGCTAACCACCACGACTCCAACAACTATCATGGGGAGAATTGAAGAGACTCATCAAGTGATCATCTTCATCATGGTTTCACATATCAAAGCTAAAACCTGTAGTCGAAAGAAGAATTTTGTTAGATGGATTTGATTTTGATAGACTTGTTGTTTGGAGGAGATTCAAAAATTTTGGTTACTGGTTTGTCTCAGACTAATATAAATGGTTGCAACTTGTTGGATCAAAATTCCGCTTACCTTCTACGAATTGCTTATAAG
CDS Sequence
- >AT3G19130.1
ATGCAGACAACCAACGGCTCAGATTCGACGTTGGCAACTTCCGGAGCCACACCGCCGAATCAACAAACCCCTCCTCCACCTCAGCAGTGGCAGCAGCAGCAACAGCAACAGCAACAGTGGATGGCTGCCATGCAATATCCACCAGCGGCGGCGATGATGATGATGCAGCAGCAACAGATGCTGATGTATCCTCATCAATATGTTCCGTATAATCAAGGTCCTTATCAGCAGCATCATCCTCAGCTTCACCAATACGGGTCTTATCAACAGCACCAGCACCAGCAACACAAGGCTATTGACCGTGGATCTGGAGATGATGTCAAGACTCTTTGGGTTGGTGATCTTCTTCATTGGATGGATGAGACTTATCTCCATTCTTGCTTTTCTCACACCGGCGAGGTTTCTTCTGTGAAAGTTATACGTAACAAGCTCACTTCTCAATCAGAAGGGTATGGGTTTGTTGAGTTTCTTTCACGTGCTGCAGCTGAAGAAGTTCTTCAGAACTATAGTGGTTCAGTGATGCCAAACTCGGACCAACCCTTCCGTATAAACTGGGCATCTTTTAGTACTGGTGAAAAAAGAGCAGTGGAAAATGGTCCAGACCTATCTGTTTTTGTGGGAGACTTGTCTCCAGATGTCACTGACGTTTTATTGCATGAGACCTTTTCTGATAGATATCCTTCTGTCAAAAGCGCCAAAGTTGTGATTGATTCCAACACCGGCCGGTCCAAAGGTTATGGTTTTGTGAGGTTCGGTGATGAAAATGAGAGGTCAAGGGCTTTGACAGAAATGAATGGAGCTTACTGTTCGAACAGGCAAATGCGTGTAGGTATTGCAACTCCCAAAAGAGCGATTGCTAATCAGCAACAACATTCTTCACAAGCTGTGATTCTGGCTGGTGGACATGGATCAAATGGTTCCATGGGTTATGGCTCGCAGTCTGATGGCGAATCAACTAACGCAACAATATTTGTTGGCGGCATTGACCCTGATGTTATTGATGAAGACCTCAGACAACCTTTTTCCCAGTTTGGAGAGGTTGTTTCAGTGAAGATCCCAGTAGGGAAAGGATGTGGATTTGTCCAATTTGCTGACAGGAAGAGTGCTGAAGATGCTATCGAGAGTTTGAACGGGACAGTCATCGGCAAGAACACTGTCAGACTCTCCTGGGGACGAAGCCCAAACAAGCAGTGGAGAGGAGACTCAGGGCAGCAGTGGAATGGAGGATACTCACGAGGACATGGTTACAACAATGGAGGAGGATATGCTAACCACCACGACTCCAACAACTATCATGGGGAGAATTGA
Protein Sequence
- >AT3G19130.1
MQTTNGSDSTLATSGATPPNQQTPPPPQQWQQQQQQQQQWMAAMQYPPAAAMMMMQQQQMLMYPHQYVPYNQGPYQQHHPQLHQYGSYQQHQHQQHKAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSPNKQWRGDSGQQWNGGYSRGHGYNNGGGYANHHDSNNYHGEN