Gene Details:
- Gene ID: AT3G19090
- Gene Symbol: AtLARP6c, LARP6c
- Gene Name: La related protein 6c
- Description: RNA-binding protein;(source:Araport11)
- TAIR Accession: locus:2089508
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Gene Ontology:
- GO:0006396 — involved in — RNA processing
- GO:0010183 — acts upstream of or within — pollen tube guidance
Germplasm Phenotype:
- larp6c-3 — Reduced transmission (74%) through male gametophyte. Mutant pollen has germination and pollen tube guidance defects.
Function-related keywords:
Literature:
- Pollen development and fertilization in Arabidopsis is dependent on the MALE GAMETOGENESIS IMPAIRED ANTHERS gene encoding a type V P-type ATPase. DOI: 10.1101/gad.357305 ; PMID: 16291648
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- A comprehensive analysis of the La-motif protein superfamily. DOI: 10.1261/rna.1478709 ; PMID: 19299548
Sequences:
cDNA Sequence
- >AT3G19090.1
AGAGTGAGAAATAACCGAGAAGAACAAATCAAATCAATAGAAAAAAAGTATAAACAAAATTCAAAACTATTCAGTATTGATATTTGTTTACATTGAAAAAAAAATTAACTTAAAAAATATAGTTTACACAAAAAAGAAAAACCAAAAAAAAAATTGTTAGAGATTTTTTCAGAGTAGTGAGAGGAAAATGGCGCAGATGCAGCGAGAAGAAGTAGAGTCCGTCACGACGGAGAAGAAAAGATTAGACGGAGGCGGTGGATCTTCCGGCGCTCAGGCAACGGCGTTCAAATTCAACGCTCAAGCGCCGGAATTTGTACCGCGATCACATACCACCGCACCAGCACCGCAGGTTTCTCCTGTCTCCGGTTACTTTTATCCTTGTTTTCATTACAACGGTGGTTGCATAGGAGGATGTGGCGGCGGAGTCTGCGGTGGTGGAGGGACCGGCGTTGGTACTCAGTCGTCGGATTGGATCTACGTGGGAGGAGGAGATCCTACTGCTCAGCATCAACATGTTCATGATCCAGCGGCTGCGTTTTACATTTCGAATCCGGCGGTTCAGTTTCCGGCTAGTCAGAACTCGTCTTCTTCGTCGAAGAATCTGCTTTCCGATGATCTCCGCCTTAAGATCGTCAAACAGGTTGAGTACCAGTTTACGGACATGAGTCTCCTAGCCAACGAGTCCATTTCAAAGCATATAAGCAAAGACCCTGAAGGTTATGTGCCCGTATCCTATATCGCTTCGACCAAGAAGATCAAGGCTTTAACGAGTAATCACCACCTAGTTTCACTTGCTCTACGCTCCTCTTCAAAACTTGTTGTGAGTGAAGACGGCAAGAAAGTTAAGCGTACAAGTCAATTTACTGATAGAGACAGAGAGGAATTGCAGGGCCGGACTGTCGTTGCAGAGAATTTGCCAGATGATCATTCTTACCAGAACCTTGAGAAGATCTTTGGAGTTGTTGGAAACGTCAAAGCGATTCGTATATGTCATCCTCCAGAATCCAACTCGTCTCGTCCAAAAGGCGATTTCTTGATGAGCAACAAAATTCACGCCCTTATCGAGTATGACAACACTGTTATCGCGGACAAAGCAGTAGAGAAGCTAAACGATGAAAGAAACTGGAGGAAAGGGCTTCGTGTGAGGCTGCTTCTTAGATGCTCGCCAAAATCGGTGCTCAAGAACCGAAGAAACTTCGATGGAATCCTCATCGATGATGAACTCCCTTCTTATGAATCAGGAGAAGACTCTCCGCGTCTCCATTTAACCGAATCACAGCTTGATAACGATGGTGATGACAACAATGTTGGTGGACTGTGGGGTAAAGGGAGAGGAAAAGGACGAGGACGATCCCCAAGAAGCTACGCAGTAGGAGGAGGAGGACGTAGCTTCGGGATTGGGCTCGGAGTCAGCCTCGGGATACCCAGCCTGGGGTCACACGAATCTTCGTCTCCTAAAACAGCAACAAAGGGACCAAGAATGCCTGATGGAACCAGAGGCTTCACCATGGGACGTGGCAAACCTTCCATCTCACTCTCACCTAACAATCTCTAAATAGTTACCCACCACAAGGACTGCTATTTATAATTGATTTATTATAATAGAGGTAAAAGATTTTAGAGTTAATTAACCAAATAATACATATGGATTGGTTTTCCTAAGATGCATTCAAAAGAAGCAAGGCACATGACTTGGGAGAAGATAGTGAAGGCACGGTGACGTTTTTTGAGGGTTCGTTTTATATAACTTTTTTCATTTTTTGAGGCAATTTCTTTTCTGTATGTTTAATATGTTTTATTTTTGTGAGATTATTATTTGAATAATAAAGGGGTAATTTATATAGCACAAGAATTGC - >AT3G19090.2
AGAGTGAGAAATAACCGAGAAGAACAAATCAAATCAATAGAAAAAAAGTATAAACAAAATTCAAAACTATTCAGTATTGATATTTGTTTACATTGAAAAAAAAATTAACTTAAAAAATATAGTTTACACAAAAAAGAAAAACCAAAAAAAAAATTGTTAGAGATTTTTTCAGAGTAGTGAGAGGAAAATGGCGCAGATGCAGCGAGAAGAAGTAGAGTCCGTCACGACGGAGAAGAAAAGATTAGACGGAGGCGGTGGATCTTCCGGCGCTCAGGCAACGGCGTTCAAATTCAACGCTCAAGCGCCGGAATTTGTACCGCGATCACATACCACCGCACCAGCACCGCAGGTTTCTCCTGTCTCCGGTTACTTTTATCCTTGTTTTCATTACAACGGTGGTTGCATAGGAGGATGTGGCGGCGGAGTCTGCGGTGGTGGAGGGACCGGCGTTGGTACTCAGTCGTCGGATTGGATCTACGTGGGAGGAGGAGATCCTACTGCTCAGCATCAACATGTTCATGATCCAGCGGCTGCGTTTTACATTTCGAATCCGGCGGTTCAGTTTCCGGCTAGTCAGAACTCGTCTTCTTCGTCGAAGAATCTGCTTTCCGATGATCTCCGCCTTAAGATCGTCAAACAGGTTGAGTACCAGTTTACGGACATGAGTCTCCTAGCCAACGAGTCCATTTCAAAGCATATAAGCAAAGACCCTGAAGGTTATGTGCCCGTATCCTATATCGCTTCGACCAAGAAGATCAAGGCTTTAACGAGTAATCACCACCTAGTTTCACTTGCTCTACGCTCCTCTTCAAAACTTGTTGTGAGTGAAGACGGCAAGAAAGTTAAGCGTACAAGTCAATTTACTGATAGAGACAGAGAGGAATTGCAGGGCCGGACTGTCGTTGCAGAGAATTTGCCAGATGATCATTCTTACCAGAACCTTGAGAAGATCTTTGGAGTTGTTGGAAACGTCAAAGCGATTCGTATATGTCATCCTCCAGAATCCAACTCGTCTCGTCCAAAAGGCGATTTCTTGATGAGCAACAAAATTCACGCCCTTATCGAGTATGACAACACTGTTATCGCGGACAAAGCAGTAGAGAAGCTAAACGATGAAAGAAACTGGAGGAAAGGGCTTCGTGTGAGGCTGCTTCTTAGATGCTCGCCAAAATCGGTGCTCAAGAACCGAAGAAACTTCGATGGAATCCTCATCGATGATGAACTCCCTTCTTATGAATCAGGAGAAGACTCTCCGCGTCTCCATTTAACCGAATCACAGCTTGATAACGATGGTGATGACAACAATGTTGGTGGACTGTGGGGTAAAGGGAGAGGAAAAGGACGAGGACGATCCCCAAGAAGCTACGCAGTAGGAGGAGGAGGACGTAGCTTCGGGATTGGGCTCGGAGTCAGCCTCGGGATACCCAGCCTGGGGTCACACGAATCTTCGTCTCCTAAAACAGCAACAAAGGGACCAAGAATGCCTGATGGAACCAGAGGCTTCACCATGGGACGTGGCAAACCTTCCATCTCACTCTCACCTAACAATCTCTAAATAGTTACCCACCACAAGGACTGCTATTTATAATTGATTTATTATAATAGAGGTAAAAGATTTTAGAGTTAATTAACCAAATAATACATATGGATTGGTTTTCCTAAGATGCATTCAAAAGAAGCAAGGCACATGACTTGGGAGAAGATAGTGAAGGCACGGTGACGTTTTTTGAGGGTTCGTTTTATATAACTTTTTTCATTTTTTGAGGCAATTTCTTTTCTGTATGTTTAATATGTTTTATTTTTGTGAGATTATTATTTGAATAATAAAGGGGTAATTTATATAGCACAAGAATTGC
CDS Sequence
- >AT3G19090.1
ATGGCGCAGATGCAGCGAGAAGAAGTAGAGTCCGTCACGACGGAGAAGAAAAGATTAGACGGAGGCGGTGGATCTTCCGGCGCTCAGGCAACGGCGTTCAAATTCAACGCTCAAGCGCCGGAATTTGTACCGCGATCACATACCACCGCACCAGCACCGCAGGTTTCTCCTGTCTCCGGTTACTTTTATCCTTGTTTTCATTACAACGGTGGTTGCATAGGAGGATGTGGCGGCGGAGTCTGCGGTGGTGGAGGGACCGGCGTTGGTACTCAGTCGTCGGATTGGATCTACGTGGGAGGAGGAGATCCTACTGCTCAGCATCAACATGTTCATGATCCAGCGGCTGCGTTTTACATTTCGAATCCGGCGGTTCAGTTTCCGGCTAGTCAGAACTCGTCTTCTTCGTCGAAGAATCTGCTTTCCGATGATCTCCGCCTTAAGATCGTCAAACAGGTTGAGTACCAGTTTACGGACATGAGTCTCCTAGCCAACGAGTCCATTTCAAAGCATATAAGCAAAGACCCTGAAGGTTATGTGCCCGTATCCTATATCGCTTCGACCAAGAAGATCAAGGCTTTAACGAGTAATCACCACCTAGTTTCACTTGCTCTACGCTCCTCTTCAAAACTTGTTGTGAGTGAAGACGGCAAGAAAGTTAAGCGTACAAGTCAATTTACTGATAGAGACAGAGAGGAATTGCAGGGCCGGACTGTCGTTGCAGAGAATTTGCCAGATGATCATTCTTACCAGAACCTTGAGAAGATCTTTGGAGTTGTTGGAAACGTCAAAGCGATTCGTATATGTCATCCTCCAGAATCCAACTCGTCTCGTCCAAAAGGCGATTTCTTGATGAGCAACAAAATTCACGCCCTTATCGAGTATGACAACACTGTTATCGCGGACAAAGCAGTAGAGAAGCTAAACGATGAAAGAAACTGGAGGAAAGGGCTTCGTGTGAGGCTGCTTCTTAGATGCTCGCCAAAATCGGTGCTCAAGAACCGAAGAAACTTCGATGGAATCCTCATCGATGATGAACTCCCTTCTTATGAATCAGGAGAAGACTCTCCGCGTCTCCATTTAACCGAATCACAGCTTGATAACGATGGTGATGACAACAATGTTGGTGGACTGTGGGGTAAAGGGAGAGGAAAAGGACGAGGACGATCCCCAAGAAGCTACGCAGTAGGAGGAGGAGGACGTAGCTTCGGGATTGGGCTCGGAGTCAGCCTCGGGATACCCAGCCTGGGGTCACACGAATCTTCGTCTCCTAAAACAGCAACAAAGGGACCAAGAATGCCTGATGGAACCAGAGGCTTCACCATGGGACGTGGCAAACCTTCCATCTCACTCTCACCTAACAATCTCTAA - >AT3G19090.2
ATGGCGCAGATGCAGCGAGAAGAAGTAGAGTCCGTCACGACGGAGAAGAAAAGATTAGACGGAGGCGGTGGATCTTCCGGCGCTCAGGCAACGGCGTTCAAATTCAACGCTCAAGCGCCGGAATTTGTACCGCGATCACATACCACCGCACCAGCACCGCAGGTTTCTCCTGTCTCCGGTTACTTTTATCCTTGTTTTCATTACAACGGTGGTTGCATAGGAGGATGTGGCGGCGGAGTCTGCGGTGGTGGAGGGACCGGCGTTGGTACTCAGTCGTCGGATTGGATCTACGTGGGAGGAGGAGATCCTACTGCTCAGCATCAACATGTTCATGATCCAGCGGCTGCGTTTTACATTTCGAATCCGGCGGTTCAGTTTCCGGCTAGTCAGAACTCGTCTTCTTCGTCGAAGAATCTGCTTTCCGATGATCTCCGCCTTAAGATCGTCAAACAGGTTGAGTACCAGTTTACGGACATGAGTCTCCTAGCCAACGAGTCCATTTCAAAGCATATAAGCAAAGACCCTGAAGGTTATGTGCCCGTATCCTATATCGCTTCGACCAAGAAGATCAAGGCTTTAACGAGTAATCACCACCTAGTTTCACTTGCTCTACGCTCCTCTTCAAAACTTGTTGTGAGTGAAGACGGCAAGAAAGTTAAGCGTACAAGTCAATTTACTGATAGAGACAGAGAGGAATTGCAGGGCCGGACTGTCGTTGCAGAGAATTTGCCAGATGATCATTCTTACCAGAACCTTGAGAAGATCTTTGGAGTTGTTGGAAACGTCAAAGCGATTCGTATATGTCATCCTCCAGAATCCAACTCGTCTCGTCCAAAAGGCGATTTCTTGATGAGCAACAAAATTCACGCCCTTATCGAGTATGACAACACTGTTATCGCGGACAAAGCAGTAGAGAAGCTAAACGATGAAAGAAACTGGAGGAAAGGGCTTCGTGTGAGGCTGCTTCTTAGATGCTCGCCAAAATCGGTGCTCAAGAACCGAAGAAACTTCGATGGAATCCTCATCGATGATGAACTCCCTTCTTATGAATCAGGAGAAGACTCTCCGCGTCTCCATTTAACCGAATCACAGCTTGATAACGATGGTGATGACAACAATGTTGGTGGACTGTGGGGTAAAGGGAGAGGAAAAGGACGAGGACGATCCCCAAGAAGCTACGCAGTAGGAGGAGGAGGACGTAGCTTCGGGATTGGGCTCGGAGTCAGCCTCGGGATACCCAGCCTGGGGTCACACGAATCTTCGTCTCCTAAAACAGCAACAAAGGGACCAAGAATGCCTGATGGAACCAGAGGCTTCACCATGGGACGTGGCAAACCTTCCATCTCACTCTCACCTAACAATCTCTAA
Protein Sequence
- >AT3G19090.1
MAQMQREEVESVTTEKKRLDGGGGSSGAQATAFKFNAQAPEFVPRSHTTAPAPQVSPVSGYFYPCFHYNGGCIGGCGGGVCGGGGTGVGTQSSDWIYVGGGDPTAQHQHVHDPAAAFYISNPAVQFPASQNSSSSSKNLLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHHLVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAENLPDDHSYQNLEKIFGVVGNVKAIRICHPPESNSSRPKGDFLMSNKIHALIEYDNTVIADKAVEKLNDERNWRKGLRVRLLLRCSPKSVLKNRRNFDGILIDDELPSYESGEDSPRLHLTESQLDNDGDDNNVGGLWGKGRGKGRGRSPRSYAVGGGGRSFGIGLGVSLGIPSLGSHESSSPKTATKGPRMPDGTRGFTMGRGKPSISLSPNNL - >AT3G19090.2
MAQMQREEVESVTTEKKRLDGGGGSSGAQATAFKFNAQAPEFVPRSHTTAPAPQVSPVSGYFYPCFHYNGGCIGGCGGGVCGGGGTGVGTQSSDWIYVGGGDPTAQHQHVHDPAAAFYISNPAVQFPASQNSSSSSKNLLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHHLVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAENLPDDHSYQNLEKIFGVVGNVKAIRICHPPESNSSRPKGDFLMSNKIHALIEYDNTVIADKAVEKLNDERNWRKGLRVRLLLRCSPKSVLKNRRNFDGILIDDELPSYESGEDSPRLHLTESQLDNDGDDNNVGGLWGKGRGKGRGRSPRSYAVGGGGRSFGIGLGVSLGIPSLGSHESSSPKTATKGPRMPDGTRGFTMGRGKPSISLSPNNL