Information report for AT3G18990
Gene Details
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Functional Descriptions
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- CS9388 — In the absence of vernalization, the double mutant flowered at the same time as the fca-1 single mutant.
- CS9388 — Reduced response of fca-1 to vernalization; under typical long-day (16h) photoperiods, vrn1-1 fca-1 flowers with about 25 leaves without vernalization and with about 20 leaves after vernalization; the diameter of the vegetative rosette is smaller than fca-1 alone; older leaves develop grayish-brown necrotic lesions.
- vrn1-2 — No delay in flowering but reduction in vernalization response.
- vrn1-2 fca-1 — Strong delay in flowering and vernalization response.
Functional Keywords
Literature and News
- Multiple roles of Arabidopsis VRN1 in vernalization and flowering time control. DOI: 10.1126/science.1072147 ; PMID: 12114624
- Positional cloning of the wheat vernalization gene VRN1. DOI: 10.1073/pnas.0937399100 ; PMID: 12730378
- LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC. DOI: 10.1073/pnas.0507427103 ; PMID: 16549797
- Quantitative effects of vernalization on FLC and SOC1 expression. DOI: 10.1111/j.1365-313X.2006.02652.x ; PMID: 16507079
- The PHD finger protein VRN5 functions in the epigenetic silencing of Arabidopsis FLC. DOI: 10.1016/j.cub.2006.11.052 ; PMID: 17174094
- Vernalization-induced trimethylation of histone H3 lysine 27 at FLC is not maintained in mitotically quiescent cells. DOI: 10.1016/j.cub.2007.10.026 ; PMID: 17980595
- Wheat FT protein regulates VRN1 transcription through interactions with FDL2. DOI: 10.1111/j.1365-313X.2008.03526.x ; PMID: 18433437
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- The molecular biology of seasonal flowering-responses in Arabidopsis and the cereals. DOI: 10.1093/aob/mcp063 ; PMID: 19304997
- Integration of seasonal flowering time responses in temperate cereals. DOI: 10.4161/psb.3.8.6352 ; PMID: 19704811
- VERDANDI is a direct target of the MADS domain ovule identity complex and affects embryo sac differentiation in Arabidopsis. DOI: 10.1105/tpc.109.068627 ; PMID: 20581305
- Diversification of three APETALA1/FRUITFULL-like genes in wheat. DOI: 10.1007/s00438-012-0679-7 ; PMID: 22314801
- Comparative genomic analysis of soybean flowering genes. DOI: 10.1371/journal.pone.0038250 ; PMID: 22679494
- Wheat TILLING mutants show that the vernalization gene VRN1 down-regulates the flowering repressor VRN2 in leaves but is not essential for flowering. DOI: 10.1371/journal.pgen.1003134 ; PMID: 23271982
- Analysis of the arabidopsis REM gene family predicts functions during flower development. DOI: 10.1093/aob/mcu124 ; PMID: 25002525
- Promoter-based integration in plant defense regulation. DOI: 10.1104/pp.114.248716 ; PMID: 25352272
- An Arabidopsis gene regulatory network for secondary cell wall synthesis. DOI: 10.1038/nature14099 ; PMID: 25533953
- Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana. DOI: 10.1007/s00299-018-2277-6 ; PMID: 29541883
- The molecular mechanism of vernalization in Arabidopsis and cereals: role of Flowering Locus C and its homologs. DOI: 10.1111/ppl.13163 ; PMID: 32623749
Gene Resources
- UniProt: A0A178VIS1
- EMBL: CACSHJ010000089, LUHQ01000003
- AlphaFoldDB: A0A178VIS1
- EnsemblPlants: AT3G18990.1
- Gramene: AT3G18990.1
- KEGG: ath:AT3G18990
- ExpressionAtlas: AT3G18990
- InterPro: IPR003340, IPR015300, IPR050655
- PANTHER: PTHR31920, PTHR31920:SF37
- SUPFAM: SSF101936
- PROSITE: PS50863
- Gene3D: 2.40.330.10
- OrthoDB: A0A178VIS1
- SWISS-MODEL: A0A178VIS1
- Conserved Domain Database: cd10017
Homologs
- Brassica napus GSBRNA2T00005597001, BnaA01G0322900ZS, GSBRNA2T00101258001, GSBRNA2T00107563001, BnaC05G0407600ZS
- Brassica oleracea XP_013604063.1, Bo1g115980, XP_013587606.1
- Brassica rapa XP_009112206.1, Bra037544
- Raphanus raphanistrum RrC50_p6
Sequences
cDNA Sequence
- >AT3G18990.1
GCGTGTTACAAAAAAGAAATATTTGTTAAGAAAAAAAAAGATGGTCGAAAAAGGGGAGTAGGTGGGGGCGGTCGGCTTTTGATTAGTTAATAAAAGAAACCACACGAGTGACCTACCGATTCGACTCAACGAGTCTACCGAGCTAACACAGATTCAACTCGCTCGAGCTTCGTTTTATGACAAGTTGGTTTTTTTTTTTTTTTTTTAATTTTTTCATCTTCTTGGGTTTGGTTGGGTCACTCTTCAGGTCAGGTGTGTAAAAAAGAAAGAAAGAAAAGAGAGATTGTTGTGTTGTAACCCCTTTGACTAAAATCTAATGAACTTTTTTAACACAACAAAACTCCTTCAGATCTGAAAGGGTTCTTCTTCTCTCTTAGTCTCTTTGTCCTTTTATTCTCCGTCGTCGTTTCATGATCTGACTCTCTGGTCTTCTCTTCTTCTTCTTCTTCTTCTATTTTTTCTTACTTCGTCACTGTTGTGTCTGAACATGCCACGCCCTTTCTTCCATAAGTTGATTTTCTCATCCACTATCCAAGAAAAACGTCTGAGGGTCCCAGATAAGTTTGTGAGTAAATTCAAGGATGAGCTTTCGGTTGCTGTTGCACTCACAGTACCTGATGGTCATGTTTGGCGTGTAGGACTAAGGAAAGCTGACAACAAAATTTGGTTTCAAGATGGTTGGCAAGAGTTTGTTGACCGTTACTCCATTCGCATTGGTTATCTTTTGATTTTTAGATATGAAGGAAACTCTGCCTTCAGCGTCTACATTTTCAATTTATCCCACTCTGAGATCAATTACCATTCCACCGGTCTCATGGATTCCGCTCACAACCACTTCAAACGCGCCCGTTTGTTTGAAGACCTTGAAGATGAAGATGCCGAGGTCATCTTTCCTTCTTCTGTGTACCCATCACCACTTCCTGAGTCTACAGTACCAGCCAACAAAGGGTATGCTAGTTCAGCCATCCAAACCTTGTTCACTGGACCAGTTAAAGCTGAAGAGCCAACGCCAACCCCAAAAATACCTAAAAAGAGAGGGAGGAAGAAGAAAAATGCTGATCCTGAGGAAATAAACTCATCAGCTCCGCGAGATGATGATCCAGAGAACCGTTCAAAGTTCTACGAGAGTGCTTCTGCGAGAAAGAGAACCGTGACTGCAGAAGAAAGAGAGAGAGCCATCAATGCAGCCAAAACGTTCGAACCAACAAACCCTTTCTTCAGAGTGGTTCTGCGACCATCCTATCTATACAGAGGTTGCATCATGTATCTTCCTTCTGGGTTTGCTGAGAAGTACCTAAGTGGGATCTCCGGGTTCATCAAAGTCCAGCTTGCGGAGAAACAATGGCCTGTTCGATGTCTCTACAAAGCCGGGAGAGCCAAATTCAGTCAAGGATGGTACGAATTCACTCTAGAGAACAACTTAGGAGAAGGAGACGTCTGTGTGTTTGAGCTGCTCAGAACCAGAGATTTCGTTTTGAAAGTGACAGCCTTTCGAGTCAACGAGTACGTCTGAACAAAGCATTATGGTGTGATCATTCTGGATTTGCAAGTACAATGTCGTGTAGGAGTATCTTAATTTAAAAACAACTAAAAAACTCTCTTCTGGTCTGTGTCATTATTGCGTCAGTGTCTCGTTTTTTCTCTCGGGTTTACTTTGTGTTATCGATGTGGATAAGTTGTTTTTACCTCATTATATATAACCTCTTGAGTGGAACTCAAATTGTTTGAGTAGAACAAACAAAGTTAGGGTTTAAGAAGAAGTCTGTAAATACCTAATCTCCATCAAATTTGAGTAGAAAGACAAACTGTTCTGGTGGAATACAAG - >AT3G18990.2
GCGTGTTACAAAAAAGAAATATTTGTTAAGAAAAAAAAAGATGGTCGAAAAAGGGGAGTAGGTGGGGGCGGTCGGCTTTTGATTAGTTAATAAAAGAAACCACACGAGTGACCTACCGATTCGACTCAACGAGTCTACCGAGCTAACACAGATTCAACTCGCTCGAGCTTCGTTTTATGACAAGTTGGTTTTTTTTTTTTTTTTTTAATTTTTTCATCTTCTTGGGTTTGGTTGGGTCACTCTTCAGGTCAGGTGTGTAAAAAAGAAAGAAAGAAAAGAGAGATTGTTGTGTTGTAACCCCTTTGACTAAAATCTAATGAACTTTTTTAACACAACAAAACTCCTTCAGATCTGAAAGGGTTCTTCTTCTCTCTTAGTCTCTTTGTCCTTTTATTCTCCGTCGTCGTTTCATGATCTGACTCTCTGGTCTTCTCTTCTTCTTCTTCTTCTTCTATTTTTTCTTACTTCGTCACTGTTGTGTCTGAACATGCCACGCCCTTTCTTCCATAAGTTGATTTTCTCATCCACTATCCAAGAAAAACGTCTGAGGGTCCCAGATAAGTTTGTGAGTAAATTCAAGGATGAGCTTTCGGTTGCTGTTGCACTCACAGTACCTGATGGTCATGTTTGGCGTGTAGGACTAAGGAAAGCTGACAACAAAATTTGGTTTCAAGATGGTTGGCAAGAGTTTGTTGACCGTTACTCCATTCGCATTGGTTATCTTTTGATTTTTAGATATGAAGGAAACTCTGCCTTCAGCGTCTACATTTTCAATTTATCCCACTCTGAGATCAATTACCATTCCACCGGTCTCATGGATTCCGCTCACAACCACTTCAAACGCGCCCGTTTGTTTGAAGACCTTGAAGATGAAGATGCCGAGGTCATCTTTCCTTCTTCTGTGTACCCATCACCACTTCCTGAGTCTACAGTACCAGCCAACAAAGGGTATGCTAGTTCAGCCATCCAAACCTTGTTCACTGGACCAGTTAAAGCTGAAGAGCCAACGCCAACCCCAAAAATACCTAAAAAGAGAGGGAGGAAGAAGAAAAATGCTGATCCTGAGGAAATAAACTCATCAGCTCCGCGAGATGATGATCCAGAGAACCGTTCAAAGTTCTACGAGAGTGCTTCTGCGAGAAAGAGAACCGTGACTGCAGAAGAAAGAGAGAGAGCCATCAATGCAGCCAAAACGTTCGAACCAACAAACCCTTTCTTCAGAGTGGTTCTGCGACCATCCTATCTATACAGAGGTTGCATCATGTATCTTCCTTCTGGGTTTGCTGAGAAGTACCTAAGTGGGATCTCCGGGTTCATCAAAGTCCAGCTTGCGGAGAAACAATGGCCTGTTCGATGTCTCTACAAAGCCGGGAGAGCCAAATTCAGTCAAGGATGGTACGAATTCACTCTAGAGAACAACTTAGGAGAAGGAGACGTCTGTGTGTTTGAGCTGCTCAGAACCAGAGATTTCGTTTTGAAAGTGACAGCCTTTCGAGTCAACGAGTACGTCTGAACAAAGCATTATGGTGTGATCATTCTGGATTTGCAAGTACAATGTCGTGTAGGAGTATCTTAATTTAAAAACAACTAAAAAACTCTCTTCTGGTCTGTGTCATTATTGCGTCAGTGTCTCGTTTTTTCTCTCGGGTTTACTTTGTGTTATCGATGTGGATAAGTTGTTTTTACCTCATTATATATAACCTCTTGAGTGGAACTCAAATTGTTTGAGTAGAACAAACAAAGTTAGGGTTTAAGAAGAAGTCTGTAAATACCTAATCTCCATCAAATTTGAGTAGAAAGACAAACTGTTCTGGTGGAATACAAG
CDS Sequence
- >AT3G18990.1
ATGCCACGCCCTTTCTTCCATAAGTTGATTTTCTCATCCACTATCCAAGAAAAACGTCTGAGGGTCCCAGATAAGTTTGTGAGTAAATTCAAGGATGAGCTTTCGGTTGCTGTTGCACTCACAGTACCTGATGGTCATGTTTGGCGTGTAGGACTAAGGAAAGCTGACAACAAAATTTGGTTTCAAGATGGTTGGCAAGAGTTTGTTGACCGTTACTCCATTCGCATTGGTTATCTTTTGATTTTTAGATATGAAGGAAACTCTGCCTTCAGCGTCTACATTTTCAATTTATCCCACTCTGAGATCAATTACCATTCCACCGGTCTCATGGATTCCGCTCACAACCACTTCAAACGCGCCCGTTTGTTTGAAGACCTTGAAGATGAAGATGCCGAGGTCATCTTTCCTTCTTCTGTGTACCCATCACCACTTCCTGAGTCTACAGTACCAGCCAACAAAGGGTATGCTAGTTCAGCCATCCAAACCTTGTTCACTGGACCAGTTAAAGCTGAAGAGCCAACGCCAACCCCAAAAATACCTAAAAAGAGAGGGAGGAAGAAGAAAAATGCTGATCCTGAGGAAATAAACTCATCAGCTCCGCGAGATGATGATCCAGAGAACCGTTCAAAGTTCTACGAGAGTGCTTCTGCGAGAAAGAGAACCGTGACTGCAGAAGAAAGAGAGAGAGCCATCAATGCAGCCAAAACGTTCGAACCAACAAACCCTTTCTTCAGAGTGGTTCTGCGACCATCCTATCTATACAGAGGTTGCATCATGTATCTTCCTTCTGGGTTTGCTGAGAAGTACCTAAGTGGGATCTCCGGGTTCATCAAAGTCCAGCTTGCGGAGAAACAATGGCCTGTTCGATGTCTCTACAAAGCCGGGAGAGCCAAATTCAGTCAAGGATGGTACGAATTCACTCTAGAGAACAACTTAGGAGAAGGAGACGTCTGTGTGTTTGAGCTGCTCAGAACCAGAGATTTCGTTTTGAAAGTGACAGCCTTTCGAGTCAACGAGTACGTCTGA - >AT3G18990.2
ATGCCACGCCCTTTCTTCCATAAGTTGATTTTCTCATCCACTATCCAAGAAAAACGTCTGAGGGTCCCAGATAAGTTTGTGAGTAAATTCAAGGATGAGCTTTCGGTTGCTGTTGCACTCACAGTACCTGATGGTCATGTTTGGCGTGTAGGACTAAGGAAAGCTGACAACAAAATTTGGTTTCAAGATGGTTGGCAAGAGTTTGTTGACCGTTACTCCATTCGCATTGGTTATCTTTTGATTTTTAGATATGAAGGAAACTCTGCCTTCAGCGTCTACATTTTCAATTTATCCCACTCTGAGATCAATTACCATTCCACCGGTCTCATGGATTCCGCTCACAACCACTTCAAACGCGCCCGTTTGTTTGAAGACCTTGAAGATGAAGATGCCGAGGTCATCTTTCCTTCTTCTGTGTACCCATCACCACTTCCTGAGTCTACAGTACCAGCCAACAAAGGGTATGCTAGTTCAGCCATCCAAACCTTGTTCACTGGACCAGTTAAAGCTGAAGAGCCAACGCCAACCCCAAAAATACCTAAAAAGAGAGGGAGGAAGAAGAAAAATGCTGATCCTGAGGAAATAAACTCATCAGCTCCGCGAGATGATGATCCAGAGAACCGTTCAAAGTTCTACGAGAGTGCTTCTGCGAGAAAGAGAACCGTGACTGCAGAAGAAAGAGAGAGAGCCATCAATGCAGCCAAAACGTTCGAACCAACAAACCCTTTCTTCAGAGTGGTTCTGCGACCATCCTATCTATACAGAGGTTGCATCATGTATCTTCCTTCTGGGTTTGCTGAGAAGTACCTAAGTGGGATCTCCGGGTTCATCAAAGTCCAGCTTGCGGAGAAACAATGGCCTGTTCGATGTCTCTACAAAGCCGGGAGAGCCAAATTCAGTCAAGGATGGTACGAATTCACTCTAGAGAACAACTTAGGAGAAGGAGACGTCTGTGTGTTTGAGCTGCTCAGAACCAGAGATTTCGTTTTGAAAGTGACAGCCTTTCGAGTCAACGAGTACGTCTGA
Protein Sequence
- >AT3G18990.1
MPRPFFHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMDSAHNHFKRARLFEDLEDEDAEVIFPSSVYPSPLPESTVPANKGYASSAIQTLFTGPVKAEEPTPTPKIPKKRGRKKKNADPEEINSSAPRDDDPENRSKFYESASARKRTVTAEERERAINAAKTFEPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAEKQWPVRCLYKAGRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRVNEYV - >AT3G18990.2
MPRPFFHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMDSAHNHFKRARLFEDLEDEDAEVIFPSSVYPSPLPESTVPANKGYASSAIQTLFTGPVKAEEPTPTPKIPKKRGRKKKNADPEEINSSAPRDDDPENRSKFYESASARKRTVTAEERERAINAAKTFEPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAEKQWPVRCLYKAGRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRVNEYV