Information report for AT3G18970
Gene Details
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Functional Descriptions
- SALK_008105C — Seedlings screened in bulk via high throughput methods for responses to various stressors. Results are in comparison to Col-0.heat:no change,cold:decreased,oxidative stress:decreased,osmotic stress:no change,salt stress:no change,ABA:no change,hypoxia:no change.
Functional Keywords
Literature and News
- Reverse genetic screening identifies five E-class PPR proteins involved in RNA editing in mitochondria of Arabidopsis thaliana. DOI: 10.1074/jbc.M110.128611 ; PMID: 20566637
- The E-Subgroup Pentatricopeptide Repeat Protein Family in Arabidopsis thaliana and Confirmation of the Responsiveness PPR96 to Abiotic Stresses. DOI: 10.3389/fpls.2016.01825 ; PMID: 27994613
Gene Resources
- UniProt: A0A178VB66
- EMBL: CACSHJ010000089, LR881468, LUHQ01000003
- AlphaFoldDB: A0A178VB66
- EnsemblPlants: AT3G18970.1
- Gramene: AT3G18970.1
- KEGG: ath:AT3G18970
- Orthologous matrix: FANWVSK
- ExpressionAtlas: AT3G18970
- InterPro: IPR002885, IPR011990, IPR046848
- PANTHER: PTHR47926, PTHR47926:SF537
- PROSITE: PS51375
- Gene3D: 1.25.40.10
- OrthoDB: A0A178VB66
- SWISS-MODEL: A0A178VB66
Homologs
- Cucumis sativus Csa_7G007910
- Glycine max GLYMA_18G259800
- Malus domestica MDP0000266172
- Musa acuminata Ma05_g18740
- Nicotiana attenuata A4A49_07003
- Panicum virgatum Pavir.1NG010700.1.p
- Poncirus trifoliata Ptrif.0003s5010
- Raphanus raphanistrum RrC1952_p2
- Rosa chinensis RchiOBHm_Chr2g0168371
- Vitis vinifera VIT_214s0108g00600
Sequences
cDNA Sequence
- >AT3G18970.1
TGTCGTTATTGCGTCAGTGTCTCGTTTTTTCTCTCGGGTTTACTTTGTGTTATCGATGTGGATAAGTTGTTTTTACCTCATTATATATAACCTCTTGAGTGGAACTCAAATTGTTTGAGTAGAACAAACAAAGTTAGGGTTTAAGAAGAAGTCTGTAAATACCTAATCTCCATCAAATTTGGTACTTGTAGCCATGATGATGATTATGATGAAGATGGGTTTGTGCTGTAGATTCTTCGATATTTATTTTATCTCTTAGCTTTTGTTTCTCCTTCTCTTTGCCTTAATCCATTACAGTATCAGAGTTTGGTGCTTATGAGCTCTGTTTTTCCAGGACCAAGATTTTTGTCCTTGTTGCAACAGAATTCGAAAACCCTAATTCAAGCTAAGCAAATCCATGCTCAATTAGTCATCAATGGCTGCCATGATAATTCTCTATTTGGCAAACTCATAGGCCATTACTGTTCAAAGCCATCAACCGAAAGCAGCTCAAAGCTTGCTCATTTACTAGTGTTTCCTCGATTTGGTCATCCTGATAAGTTTCTCTTCAACACATTGCTTAAATGTAGCAAACCAGAGGACTCGATTCGGATTTTTGCCAATTATGCATCAAAAAGTTCGTTGCTTTATCTCAATGAGCGCACTTTTGTCTTCGTCCTTGGCGCTTGTGCTAGGTCAGCTTCGTCGTCGGCGTTACGGGTTGGTAGAATTGTTCATGGGATGGTGAAAAAGCTTGGCTTTCTATATGAATCTGAATTGATTGGAACCACTTTACTCCATTTCTACGCTAAGAATGGAGATTTACGTTATGCAAGGAAGGTGTTTGACGAAATGCCTGAGAGAACCTCTGTTACATGGAACGCAATGATAGGTGGATATTGTTCACATAAGGATAAAGGCAATCACAATGCGAGAAAGGCTATGGTTTTGTTTAGGAGATTCTCTTGCTGTGGTAGTGGAGTTAGACCTACTGATACAACCATGGTTTGTGTTCTTTCAGCCATTTCTCAGACGGGTTTGCTCGAAATTGGTTCTCTCGTTCATGGTTACATAGAAAAGCTCGGGTTCACACCCGAAGTTGATGTCTTTATCGGTACTGCACTTGTCGACATGTACTCAAAATGCGGCTGCTTGAACAACGCATTCTCCGTGTTCGAGCTAATGAAAGTGAAAAATGTCTTTACATGGACTTCAATGGCAACGGGGCTAGCTCTCAACGGTAGAGGAAACGAAACACCGAATCTTCTAAACCGAATGGCGGAATCTGGGATCAAACCAAACGAAATAACTTTCACTAGCTTGCTTTCGGCTTATCGTCATATAGGTCTTGTTGAAGAAGGAATCGAGCTGTTCAAGAGCATGAAGACAAGATTTGGTGTCACACCGGTTATCGAACACTATGGTTGCATAGTAGATCTTCTTGGTAAGGCAGGGCGGATACAAGAGGCTTATCAGTTTATATTAGCTATGCCTATAAAGCCTGACGCTATCTTGTTAAGAAGCCTCTGCAATGCCTGCAGCATTTATGGAGAGACTGTAATGGGTGAAGAGATCGGAAAGGCTCTTCTCGAGATAGAACGAGAGGACGAGAAGCTTTCGGGTTCTGAGTGCGAAGATTATGTCGCTTTATCGAATGTGTTAGCTCATAAAGGGAAATGGGTAGAGGTAGAGAAGCTGAGGAAGGAGATGAAAGAAAGAAGAATCAAAACAAGACCTGGTTACAGTTTTGTTTAACATAGCTTGTTACAGGTCTCGGTTCTGTTAAAAGCTCTGTTATCCCCTGAAGACTCTCTTGTCTTCTTCTTCTTCTTTAAGCACATGCATTGGATTCATCACATCAAGATCTACACATAGATTAAAAATATTCAGATCCCAATCTTCTTAATCTATATTAAGAACAAAGTCTTCTTACCGTGTAGAATCTTGTCAAGTTCGATGTCTCTTGATCTCTTCTTGGATTTGTGCTCTGTATCACCACCATTAACAGATTGATTATTCTTCCTTGTACCTTGAGTTCCAACAAA
CDS Sequence
- >AT3G18970.1
ATGAGCTCTGTTTTTCCAGGACCAAGATTTTTGTCCTTGTTGCAACAGAATTCGAAAACCCTAATTCAAGCTAAGCAAATCCATGCTCAATTAGTCATCAATGGCTGCCATGATAATTCTCTATTTGGCAAACTCATAGGCCATTACTGTTCAAAGCCATCAACCGAAAGCAGCTCAAAGCTTGCTCATTTACTAGTGTTTCCTCGATTTGGTCATCCTGATAAGTTTCTCTTCAACACATTGCTTAAATGTAGCAAACCAGAGGACTCGATTCGGATTTTTGCCAATTATGCATCAAAAAGTTCGTTGCTTTATCTCAATGAGCGCACTTTTGTCTTCGTCCTTGGCGCTTGTGCTAGGTCAGCTTCGTCGTCGGCGTTACGGGTTGGTAGAATTGTTCATGGGATGGTGAAAAAGCTTGGCTTTCTATATGAATCTGAATTGATTGGAACCACTTTACTCCATTTCTACGCTAAGAATGGAGATTTACGTTATGCAAGGAAGGTGTTTGACGAAATGCCTGAGAGAACCTCTGTTACATGGAACGCAATGATAGGTGGATATTGTTCACATAAGGATAAAGGCAATCACAATGCGAGAAAGGCTATGGTTTTGTTTAGGAGATTCTCTTGCTGTGGTAGTGGAGTTAGACCTACTGATACAACCATGGTTTGTGTTCTTTCAGCCATTTCTCAGACGGGTTTGCTCGAAATTGGTTCTCTCGTTCATGGTTACATAGAAAAGCTCGGGTTCACACCCGAAGTTGATGTCTTTATCGGTACTGCACTTGTCGACATGTACTCAAAATGCGGCTGCTTGAACAACGCATTCTCCGTGTTCGAGCTAATGAAAGTGAAAAATGTCTTTACATGGACTTCAATGGCAACGGGGCTAGCTCTCAACGGTAGAGGAAACGAAACACCGAATCTTCTAAACCGAATGGCGGAATCTGGGATCAAACCAAACGAAATAACTTTCACTAGCTTGCTTTCGGCTTATCGTCATATAGGTCTTGTTGAAGAAGGAATCGAGCTGTTCAAGAGCATGAAGACAAGATTTGGTGTCACACCGGTTATCGAACACTATGGTTGCATAGTAGATCTTCTTGGTAAGGCAGGGCGGATACAAGAGGCTTATCAGTTTATATTAGCTATGCCTATAAAGCCTGACGCTATCTTGTTAAGAAGCCTCTGCAATGCCTGCAGCATTTATGGAGAGACTGTAATGGGTGAAGAGATCGGAAAGGCTCTTCTCGAGATAGAACGAGAGGACGAGAAGCTTTCGGGTTCTGAGTGCGAAGATTATGTCGCTTTATCGAATGTGTTAGCTCATAAAGGGAAATGGGTAGAGGTAGAGAAGCTGAGGAAGGAGATGAAAGAAAGAAGAATCAAAACAAGACCTGGTTACAGTTTTGTTTAA
Protein Sequence
- >AT3G18970.1
MSSVFPGPRFLSLLQQNSKTLIQAKQIHAQLVINGCHDNSLFGKLIGHYCSKPSTESSSKLAHLLVFPRFGHPDKFLFNTLLKCSKPEDSIRIFANYASKSSLLYLNERTFVFVLGACARSASSSALRVGRIVHGMVKKLGFLYESELIGTTLLHFYAKNGDLRYARKVFDEMPERTSVTWNAMIGGYCSHKDKGNHNARKAMVLFRRFSCCGSGVRPTDTTMVCVLSAISQTGLLEIGSLVHGYIEKLGFTPEVDVFIGTALVDMYSKCGCLNNAFSVFELMKVKNVFTWTSMATGLALNGRGNETPNLLNRMAESGIKPNEITFTSLLSAYRHIGLVEEGIELFKSMKTRFGVTPVIEHYGCIVDLLGKAGRIQEAYQFILAMPIKPDAILLRSLCNACSIYGETVMGEEIGKALLEIEREDEKLSGSECEDYVALSNVLAHKGKWVEVEKLRKEMKERRIKTRPGYSFV