Gene Details:
- Gene ID: AT3G18770
- Gene Symbol: ATG13B
- Gene Name: autophagy 13B
- Description: Autophagy-related protein 13;(source:Araport11)
- TAIR Accession:
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Germplasm Phenotype:
- CS69863 — Premature senescence under a short-day photoperiod (8-hr light/16-hr dark). Hypersensitivity to N and fixed-C deprivation.
Literature:
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Autophagic Degradation of the 26S Proteasome Is Mediated by the Dual ATG8/Ubiquitin Receptor RPN10 in Arabidopsis. DOI: 10.1016/j.molcel.2021.03.026 ; PMID: 33961777
- Type one protein phosphatase regulates fixed-carbon starvation-induced autophagy in Arabidopsis. DOI: 10.1093/plcell/koac251 ; PMID: 35961047
- 14-3-3 proteins contribute to autophagy by modulating SINAT-mediated degradation of ATG13. DOI: 10.1093/plcell/koac273 ; PMID: 36053201
Sequences:
cDNA Sequence
- >AT3G18770.1
ATTTAAGTGTGTATCGAACGAGTCACGAAGAAGATATCAAATCGTCTCTGGAAAAATAAAGAATTTTAGAATGAACGAATTAGTATTACTTATCTGATAATGACGATAACTAACTTGCTTGATTTCCAGATATTCCTCATGGTTTTGATTCAATTTCGTCTCCCATAGTTTTGAACTCGCAACACTAACTTTTTGTAATCGAAAGTTTTGTCCTTTTTTTTTAACAATCGTCGTTTAGGGTTCTTTCAATTTTGCCGATAAAATCTTATATAAAAAAAAAACAGTGAAGAATAAGTTCGAAGAAGAAGAAGAAGACTTAAAAAGCAGCGACACAAGTCGGTGGTGACTCGGTAAGAAAAAGAAAGATGTCATCTTCACACAACAGGAGTAACAACAACAATTCAGAAGGAGCTAAAGCAGAACAGATCATATTTGAGTTCTTTGCTAAAAGCCTTCACATCATTCTCGAATCAAGGACTCCTTTTATGTCTTCAAGGAACTTTAGTGGTGAGCAGATGATTTGTTCTCCTTCCTCATCTTCTTCCTCTTCCTCGAGTGTTAGACCTCGAGACAAATGGTTCAATCTAGCTCTTAGGGAATGTCCTGCAGCTTTAGAGAGTTTCGATATCGGGCGGAGAAGCAGTCTTGAGCCTTTGGTTGTTGATGTTGTTCTTGTGGTGAGGCCACTTGTTGGTGATCAGTCTGGTAAAAGGGAGCTTATCAGGAACTTCTCCGGGAAAGATTATCAGTCTGGTTGGAATTCTGATCAAGATGAATTGGGATGTGAGACTAAGAACGAGCAGATTATTGAGAGATGGGTGGTGCAATATGATAATAGGAAGATCAGGGAATCTGTTACTACTAGTAGCAGGAGGTCAAGCAGTAATAAGTTGCAAGTGATGTATAAGAAAGCTACTCTGCTGCTTAGATCATTGTTTGTCATGGTTAGGCTTTTACCTGCTTATAAGATTTTTCGGGAACTCAATTCCTCGGGGCAGATCTTCAAGTTCAAGCTTGTTCCTAGGGTCCCTTCTATAGTTGAGCCATTCACTCGTAAAGAAGAAGCAGAAATGCAGAAGTTTTCTTTCACACCGGTTGAAACGATCTGTGGTAGACTTTGCTTATCGGTTTTATATCGTTCTCTCTCAGATGTCAGTTGCGAACACTCTACACCTATGTCTCCAACATTTATAACCGATTATGTTGGAAGTCCCTTGGCTGATCCTTTAAAGAGGTTCCCTTCCCTTCCTCTTTCATATGGTTCTCCTCCATTGCTGCCATTTCAAAGGCGCCATAGCTGGAGTTTCGATCGTTACAAGGCATCTCCACCTTCTGTTTCTTGCTCACCATCGCCTACACGCTCGGATTCACATGCATTGGTTTCACATCCTTGCTCTCGTCATCTTCCTCCTCACCCTTCTGATATACCCACTGGTCGTAGGAAGGAAAGCTACCCCGAAGAGTATTCTCCTTGTCAAGATTTCTCCCCTCCTCCTTCTCCTTCAGCACCAAAACACGCCGTCCCAAGAGGCATCACACGTACTGAAAGTGCTCCAGTCAGAATACCAGCTCCAACTTTCCAGTCCAAAGAAAACGTTGTGGCACCTTCTGCTCATCTGAAGTTGTCGAGACACGCTTCGTTGAAGCCTGTGAGAAACTTGGGTCCTGGTGAATCTGGAGCAGCAATAGATAAGCTGTTTCTTTATGGGAGAGATGACTTTAGAAGACCTTCTGGGGTGAGGCCGTCTTCCAGCAGTTCTCCGCGGATATCATTTTCCCGGAGTTCCAGTAGATCTTTCCAAGACGATTTTGATGATCCTGATTTCCCTTGCCCATTTGATGTTGAGTATGATGATATTACAGATCGGAATAGCAGACCAGGGTCGTTTGACCACAGAGGAGACATACATGAACCATTCGATTCAAGCGGGTCATACCCGAAGAAGTCCCAAGATGCTGCAGTTGGTGCCCTTGTGAGAATGCTGAAGAAAGCGCCACCTCTCAGACAAGATGTCTCTGAATCTTCCAGACCTGAAATTTGCTCGAACAACAACAAACCCGCAGGGGCTCATGAGATAGCAGTAGCGTCTATCACAGCCTCGGGGATTGCTCTGGCCTCAAAGACAACAGCTGATGCTTTGGAAGAGTTGAGGTCTTACAAAGAAATGAAGAATCATTTGTTGCTTGGTCAATCCACATCAAACCCTTCCTCGGTTACTATTACTTCACCCTTTGATGTTTGATGTTTCAGAATCTTGACCCATTTTGGGTTTCGGTTTGTTTTTTTTTTTTTTTTTTTTTCATATAATGTGTGCCTATGTAAATAATATTAAGCTCTCTACTCTTTGGATGATATTGGTCCATGTAAATAAACTTATACCCAGGAAAAAAAGAAAAAAAATTCCATGTAAATAAAATGGTAAACATATGTTAACTACTATTTATAATCATTA
CDS Sequence
- >AT3G18770.1
ATGTCATCTTCACACAACAGGAGTAACAACAACAATTCAGAAGGAGCTAAAGCAGAACAGATCATATTTGAGTTCTTTGCTAAAAGCCTTCACATCATTCTCGAATCAAGGACTCCTTTTATGTCTTCAAGGAACTTTAGTGGTGAGCAGATGATTTGTTCTCCTTCCTCATCTTCTTCCTCTTCCTCGAGTGTTAGACCTCGAGACAAATGGTTCAATCTAGCTCTTAGGGAATGTCCTGCAGCTTTAGAGAGTTTCGATATCGGGCGGAGAAGCAGTCTTGAGCCTTTGGTTGTTGATGTTGTTCTTGTGGTGAGGCCACTTGTTGGTGATCAGTCTGGTAAAAGGGAGCTTATCAGGAACTTCTCCGGGAAAGATTATCAGTCTGGTTGGAATTCTGATCAAGATGAATTGGGATGTGAGACTAAGAACGAGCAGATTATTGAGAGATGGGTGGTGCAATATGATAATAGGAAGATCAGGGAATCTGTTACTACTAGTAGCAGGAGGTCAAGCAGTAATAAGTTGCAAGTGATGTATAAGAAAGCTACTCTGCTGCTTAGATCATTGTTTGTCATGGTTAGGCTTTTACCTGCTTATAAGATTTTTCGGGAACTCAATTCCTCGGGGCAGATCTTCAAGTTCAAGCTTGTTCCTAGGGTCCCTTCTATAGTTGAGCCATTCACTCGTAAAGAAGAAGCAGAAATGCAGAAGTTTTCTTTCACACCGGTTGAAACGATCTGTGGTAGACTTTGCTTATCGGTTTTATATCGTTCTCTCTCAGATGTCAGTTGCGAACACTCTACACCTATGTCTCCAACATTTATAACCGATTATGTTGGAAGTCCCTTGGCTGATCCTTTAAAGAGGTTCCCTTCCCTTCCTCTTTCATATGGTTCTCCTCCATTGCTGCCATTTCAAAGGCGCCATAGCTGGAGTTTCGATCGTTACAAGGCATCTCCACCTTCTGTTTCTTGCTCACCATCGCCTACACGCTCGGATTCACATGCATTGGTTTCACATCCTTGCTCTCGTCATCTTCCTCCTCACCCTTCTGATATACCCACTGGTCGTAGGAAGGAAAGCTACCCCGAAGAGTATTCTCCTTGTCAAGATTTCTCCCCTCCTCCTTCTCCTTCAGCACCAAAACACGCCGTCCCAAGAGGCATCACACGTACTGAAAGTGCTCCAGTCAGAATACCAGCTCCAACTTTCCAGTCCAAAGAAAACGTTGTGGCACCTTCTGCTCATCTGAAGTTGTCGAGACACGCTTCGTTGAAGCCTGTGAGAAACTTGGGTCCTGGTGAATCTGGAGCAGCAATAGATAAGCTGTTTCTTTATGGGAGAGATGACTTTAGAAGACCTTCTGGGGTGAGGCCGTCTTCCAGCAGTTCTCCGCGGATATCATTTTCCCGGAGTTCCAGTAGATCTTTCCAAGACGATTTTGATGATCCTGATTTCCCTTGCCCATTTGATGTTGAGTATGATGATATTACAGATCGGAATAGCAGACCAGGGTCGTTTGACCACAGAGGAGACATACATGAACCATTCGATTCAAGCGGGTCATACCCGAAGAAGTCCCAAGATGCTGCAGTTGGTGCCCTTGTGAGAATGCTGAAGAAAGCGCCACCTCTCAGACAAGATGTCTCTGAATCTTCCAGACCTGAAATTTGCTCGAACAACAACAAACCCGCAGGGGCTCATGAGATAGCAGTAGCGTCTATCACAGCCTCGGGGATTGCTCTGGCCTCAAAGACAACAGCTGATGCTTTGGAAGAGTTGAGGTCTTACAAAGAAATGAAGAATCATTTGTTGCTTGGTCAATCCACATCAAACCCTTCCTCGGTTACTATTACTTCACCCTTTGATGTTTGA
Protein Sequence
- >AT3G18770.1
MSSSHNRSNNNNSEGAKAEQIIFEFFAKSLHIILESRTPFMSSRNFSGEQMICSPSSSSSSSSSVRPRDKWFNLALRECPAALESFDIGRRSSLEPLVVDVVLVVRPLVGDQSGKRELIRNFSGKDYQSGWNSDQDELGCETKNEQIIERWVVQYDNRKIRESVTTSSRRSSSNKLQVMYKKATLLLRSLFVMVRLLPAYKIFRELNSSGQIFKFKLVPRVPSIVEPFTRKEEAEMQKFSFTPVETICGRLCLSVLYRSLSDVSCEHSTPMSPTFITDYVGSPLADPLKRFPSLPLSYGSPPLLPFQRRHSWSFDRYKASPPSVSCSPSPTRSDSHALVSHPCSRHLPPHPSDIPTGRRKESYPEEYSPCQDFSPPPSPSAPKHAVPRGITRTESAPVRIPAPTFQSKENVVAPSAHLKLSRHASLKPVRNLGPGESGAAIDKLFLYGRDDFRRPSGVRPSSSSSPRISFSRSSSRSFQDDFDDPDFPCPFDVEYDDITDRNSRPGSFDHRGDIHEPFDSSGSYPKKSQDAAVGALVRMLKKAPPLRQDVSESSRPEICSNNNKPAGAHEIAVASITASGIALASKTTADALEELRSYKEMKNHLLLGQSTSNPSSVTITSPFDV