Information report for AT3G18380
Gene Details
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Functional Descriptions
- GO:0019219 — acts upstream of or within — regulation of nucleobase-containing compound metabolic process
- GO:0009909 — acts upstream of or within — regulation of flower development
- GO:0010228 — acts upstream of or within — vegetative to reproductive phase transition of meristem
- GO:0051171 — acts upstream of or within — regulation of nitrogen compound metabolic process
- GO:0009793 — acts upstream of or within — embryo development ending in seed dormancy
- GO:0003677 — enables — DNA binding
- GO:0005634 — located in — nucleus
- GO:0007049 — acts upstream of or within — cell cycle
- GO:0009416 — acts upstream of or within — response to light stimulus
- GO:0048507 — acts upstream of or within — meristem development
- GO:0003682 — enables — chromatin binding
- GO:0051301 — acts upstream of or within — cell division
- GO:0010468 — acts upstream of or within — regulation of gene expression
- GO:0006259 — acts upstream of or within — DNA metabolic process
- GO:0080090 — acts upstream of or within — regulation of primary metabolic process
- SALK_045477C — Seedlings screened in bulk via high throughput methods for responses to various stressors. Results are in comparison to Col-0.heat:no change,cold:no change,oxidative stress:no change,osmotic stress:no change,salt stress:no change,ABA:no change,hypoxia:no change.
Functional Keywords
Literature and News
- SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV. DOI: 10.1371/journal.pgen.1002195 ; PMID: 21811420
- DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV. DOI: 10.1073/pnas.1300585110 ; PMID: 23637343
- The TRIPLE PHD FINGERS proteins are required for SWI/SNF complex-mediated +1 nucleosome positioning and transcription start site determination in Arabidopsis. DOI: 10.1093/nar/gkac826 ; PMID: 36189880
- Comprehensive characterization of three classes of Arabidopsis SWI/SNF chromatin remodelling complexes. DOI: 10.1038/s41477-022-01282-z ; PMID: 36471048
Gene Resources
- UniProt: A0A654F8E9
- EMBL: CACRSJ010000106, LR881468
- AlphaFoldDB: A0A654F8E9
- EnsemblPlants: AT3G18380.2
- Gramene: AT3G18380.2
- Orthologous matrix: FIIVPAR
- ExpressionAtlas: AT3G18380
- InterPro: IPR001356, IPR009057, IPR032001
- PANTHER: PTHR33827, PTHR33827:SF7
- SUPFAM: SSF46689
- Gene3D: 2.30.30.140, 2.40.50.40
- SWISS-MODEL: A0A654F8E9
Homologs
- Brassica napus GSBRNA2T00005537001, GSBRNA2T00101355001
- Brassica oleracea XP_013616253.1, XP_013616267.1, XP_013616258.1
- Brassica rapa XP_009112763.1, XP_009112780.1, XP_009112773.1
- Raphanus raphanistrum RrC308_p4
Sequences
cDNA Sequence
- >AT3G18380.2
TTTAAAAGCCCATTACTACATGTTAAGTTTAAAAAAATTACACAGGTGAAAAGTTATATAAGCGACGGAGTCGGGTCTGAGTAAAACCGGTTTCGTTGTCGTTGGGTCACCGGCCGTACTAGAGAGATTCACCGTGAATTCGAATATTAAGTGAGAGAAGCTCCGATTGATTTCACTTTCTGCCGCCAATTTTTGTTTTTTCTTCGGTGAGACGAAGAAGATACCATGGGTCGACCTCCCAGTAATGGCGGTCCGGCGTTTCGATTTATCCTGCCTGAGGTAACGGAGATGGAAGCAATTTTGCTACAGCATAATACAGCAATGCCAGGTCGACATATTCTTGAAGCTCTTGCTGATAAGTTTAGTGAATCACCTGAGCGGAAGGGGAAAGTTGTTGTGCAGTTCAAGCAAATCTGGAACTGGTTTCAAAATAGGCGATATGCTTTACGAGCAAGGGGAAACAAAGCTCCTGGGAAGCTAAATGTATCTTCCATGCCGCGTATGGATTTACCAAATCAGATGAGAAGTGTGATTCAACCATTATCAGTTCCTAAAACCACTCATATGACTGGAAATTTACCCGGCATGACGCCTGCCCCTTCTGGTAGTTTAGTTCCCGGTGTCATGAGGAGTGGTTCAGACAACTCTTACTTGGAATTTGAAGCCAAATCTGCCAGGGATGGTGCATGGTATGATGTGCAAGCTTTCCTAGCTCATAGAAACTTGGAGATTGGTGATCCGGAAGTGCAGGTTCGATTTGCGGGTTTCGAAGTTGAAGAAGATGAATGGATAAATGTCAAAAAGCATGTAAGACAACGGTCTCTCCCATGTGAAGCATCAGAATGTGTTGCAGTTCTTGCTGGAGATCTCGTCCTTTGTTTCCAGGAAGGAAAAGATCAAGCTCTTTACTTTGACGCCATTGTTCTTGACGCACAGAGAAGAAGACATGATGTCAGAGGTTGTCGTTGTAGGTTCTTGGTGCGTTACAGCCACGACCAGTCCGAGCAGGAAATCGTTCCCTTGAGGAAGATTTGTCGGCGGCCCGAGACAGATTACAGGCTACAACAACTTCACAACGCCGTAAACGATTTGGCTAACTCAAATCAGCATCAGATACCCGCTCTAGATGCGGCTGCAAAAACCCCTCTGTCACTACCCGGAGCTACAGTTCCCATTGTTGCACCCGAGTCAAAAGATCCGAGCCTGAGTGCCACTCCAGCCACTTTGGTTCAGCCTAGCTCCAATGCAGCTACTGTTCCCGCTGGTTCAGCCTAGGCCATGTAATTTCTATCCCCGTTTGTAACAGCCATTTTTCACAGTTACTAGTAGAGGTTAACTTGGGATCATATGCATTGTACTCTCACACAATGAATTAGTCATCTAAAGCTGTATCATGCCATGTTACTTGATCCTTCATGTATGATGGAATATTTATGGTTTAGTCCGGTTTATTCATCATCTGTTGATGGTCACCGGTTTTTTACTCTTTTGAACAAACATGCTCGAATCATGTGGATTTATTCTTTTCAAGGCTTAAGTTTACAAGTTAGGAATCTTA - >AT3G18380.1
TTTAAAAGCCCATTACTACATGTTAAGTTTAAAAAAATTACACAGGTGAAAAGTTATATAAGCGACGGAGTCGGGTCTGAGTAAAACCGGTTTCGTTGTCGTTGGGTCACCGGCCGTACTAGAGAGATTCACCGTGAATTCGAATATTAAGTGAGAGAAGCTCCGATTGATTTCACTTTCTGCCGCCAATTTTTGTTTTTTCTTCGGTGAGACGAAGAAGATACCATGGGTCGACCTCCCAGTAATGGCGGTCCGGCGTTTCGATTTATCCTGCCTGAGGTAACGGAGATGGAAGCAATTTTGCTACAGCATAATACAGCAATGCCAGGTCGACATATTCTTGAAGCTCTTGCTGATAAGTTTAGTGAATCACCTGAGCGGAAGGGGAAAGTTGTTGTGCAGTTCAAGCAAATCTGGAACTGGTTTCAAAATAGGCGATATGCTTTACGAGCAAGGGGAAACAAAGCTCCTGGGAAGCTAAATGTATCTTCCATGCCGCGTATGGATTTACCAAATCAGATGAGAAGTGTGATTCAACCATTATCAGTTCCTAAAACCACTCATATGACTGGAAATTTACCCGGCATGACGCCTGCCCCTTCTGGTAGTTTAGTTCCCGGTGTCATGAGGAGTGGTTCAGACAACTCTTACTTGGAATTTGAAGCCAAATCTGCCAGGGATGGTGCATGGTATGATGTGCAAGCTTTCCTAGCTCATAGAAACTTGGAGATTGGTGATCCGGAAGTGCAGGTTCGATTTGCGGGTTTCGAAGTTGAAGAAGATGAATGGATAAATGTCAAAAAGCATGTAAGACAACGGTCTCTCCCATGTGAAGCATCAGAATGTGTTGCAGTTCTTGCTGGAGATCTCGTCCTTTGTTTCCAGGAAGGAAAAGATCAAGCTCTTTACTTTGACGCCATTGTTCTTGACGCACAGAGAAGAAGACATGATGTCAGAGGTTGTCGTTGTAGGTTCTTGGTGCGTTACAGCCACGACCAGTCCGAGCAGGAAATCGTTCCCTTGAGGAAGATTTGTCGGCGGCCCGAGACAGATTACAGGCTACAACAACTTCACAACGCCGTAAACGATTTGGCTAACTCAAATCAGCATCAGATACCCGCTCTAGATGCGGCTGCAAAAACCCCTCTGTCACTACCCGGAGCTACAGTTCCCATTGTTGCACCCGAGTCAAAAGATCCGAGCCTGAGTGCCACTCCAGCCACTTTGGTTCAGCCTAGCTCCAATGCAGCTACTGTTCCCGCTGGTTCAGCCTAGGCCATGTAATTTCTATCCCCGTTTGTAACAGCCATTTTTCACAGTTACTAGTAGAGGTTAACTTGGGATCATATGCATTGTACTCTCACACAATGAATTAGTCATCTAAAGCTGTATCATGCCATGTTACTTGATCCTTCATGTATGATGGAATATTTATGGTTTAGTCCGGTTTATTCATCATCTGTTGATGGTCACCGGTTTTTTACTCTTTTGAACAAACATGCTCGAATCATGTGGATTTATTCTTTTCAAGGCTTAAGTTTACAAGTTAGGAATCTTA - >AT3G18380.3
TTTAAAAGCCCATTACTACATGTTAAGTTTAAAAAAATTACACAGGTGAAAAGTTATATAAGCGACGGAGTCGGGTCTGAGTAAAACCGGTTTCGTTGTCGTTGGGTCACCGGCCGTACTAGAGAGATTCACCGTGAATTCGAATATTAAGTGAGAGAAGCTCCGATTGATTTCACTTTCTGCCGCCAATTTTTGTTTTTTCTTCGGTGAGACGAAGAAGATACCATGGGTCGACCTCCCAGTAATGGCGGTCCGGCGTTTCGATTTATCCTGCCTGAGGTAACGGAGATGGAAGCAATTTTGCTACAGCATAATACAGCAATGCCAGGTCGACATATTCTTGAAGCTCTTGCTGATAAGTTTAGTGAATCACCTGAGCGGAAGGGGAAAGTTGTTGTGCAGTTCAAGCAAATCTGGAACTGGTTTCAAAATAGGCGATATGCTTTACGAGCAAGGGGAAACAAAGCTCCTGGGAAGCTAAATGTATCTTCCATGCCGCGTATGGATTTACCAAATCAGATGAGAAGTGTGATTCAACCATTATCAGTTCCTAAAACCACTCATATGACTGGAAATTTACCCGGCATGACGCCTGCCCCTTCTGGTAGTTTAGTTCCCGGTGTCATGAGGAGTGGTTCAGACAACTCTTACTTGGAATTTGAAGCCAAATCTGCCAGGGATGGTGCATGGTATGATGTGCAAGCTTTCCTAGCTCATAGAAACTTGGAGATTGGTGATCCGGAAGTGCAGGTTCGATTTGCGGGTTTCGAAGTTGAAGAAGATGAATGGATAAATGTCAAAAAGCATGTAAGACAACGGTCTCTCCCATGTGAAGCATCAGAATGTGTTGCAGTTCTTGCTGGAGATCTCGTCCTTTGTTTCCAGGAAGGAAAAGATCAAGCTCTTTACTTTGACGCCATTGTTCTTGACGCACAGAGAAGAAGACATGATGTCAGAGGTTGTCGTTGTAGGTTCTTGGTGCGTTACAGCCACGACCAGTCCGAGCAGGAAATCGTTCCCTTGAGGAAGATTTGTCGGCGGCCCGAGACAGATTACAGGCTACAACAACTTCACAACGCCGTAAACGATTTGGCTAACTCAAATCAGCATCAGATACCCGCTCTAGATGCGGCTGCAAAAACCCCTCTGTCACTACCCGGAGCTACAGTTCCCATTGTTGCACCCGAGTCAAAAGATCCGAGCCTGAGTGCCACTCCAGCCACTTTGGTTCAGCCTAGCTCCAATGCAGCTACTGTTCCCGCTGGTTCAGCCTAGGCCATGTAATTTCTATCCCCGTTTGTAACAGCCATTTTTCACAGTTACTAGTAGAGGTTAACTTGGGATCATATGCATTGTACTCTCACACAATGAATTAGTCATCTAAAGCTGTATCATGCCATGTTACTTGATCCTTCATGTATGATGGAATATTTATGGTTTAGTCCGGTTTATTCATCATCTGTTGATGGTCACCGGTTTTTTACTCTTTTGAACAAACATGCTCGAATCATGTGGATTTATTCTTTTCAAGGCTTAAGTTTACAAGTTAGGAATCTTA
CDS Sequence
- >AT3G18380.2
ATGGGTCGACCTCCCAGTAATGGCGGTCCGGCGTTTCGATTTATCCTGCCTGAGGTAACGGAGATGGAAGCAATTTTGCTACAGCATAATACAGCAATGCCAGGTCGACATATTCTTGAAGCTCTTGCTGATAAGTTTAGTGAATCACCTGAGCGGAAGGGGAAAGTTGTTGTGCAGTTCAAGCAAATCTGGAACTGGTTTCAAAATAGGCGATATGCTTTACGAGCAAGGGGAAACAAAGCTCCTGGGAAGCTAAATGTATCTTCCATGCCGCGTATGGATTTACCAAATCAGATGAGAAGTGTGATTCAACCATTATCAGTTCCTAAAACCACTCATATGACTGGAAATTTACCCGGCATGACGCCTGCCCCTTCTGGTAGTTTAGTTCCCGGTGTCATGAGGAGTGGTTCAGACAACTCTTACTTGGAATTTGAAGCCAAATCTGCCAGGGATGGTGCATGGTATGATGTGCAAGCTTTCCTAGCTCATAGAAACTTGGAGATTGGTGATCCGGAAGTGCAGGTTCGATTTGCGGGTTTCGAAGTTGAAGAAGATGAATGGATAAATGTCAAAAAGCATGTAAGACAACGGTCTCTCCCATGTGAAGCATCAGAATGTGTTGCAGTTCTTGCTGGAGATCTCGTCCTTTGTTTCCAGGAAGGAAAAGATCAAGCTCTTTACTTTGACGCCATTGTTCTTGACGCACAGAGAAGAAGACATGATGTCAGAGGTTGTCGTTGTAGGTTCTTGGTGCGTTACAGCCACGACCAGTCCGAGCAGGAAATCGTTCCCTTGAGGAAGATTTGTCGGCGGCCCGAGACAGATTACAGGCTACAACAACTTCACAACGCCGTAAACGATTTGGCTAACTCAAATCAGCATCAGATACCCGCTCTAGATGCGGCTGCAAAAACCCCTCTGTCACTACCCGGAGCTACAGTTCCCATTGTTGCACCCGAGTCAAAAGATCCGAGCCTGAGTGCCACTCCAGCCACTTTGGTTCAGCCTAGCTCCAATGCAGCTACTGTTCCCGCTGGTTCAGCCTAG - >AT3G18380.1
ATGGGTCGACCTCCCAGTAATGGCGGTCCGGCGTTTCGATTTATCCTGCCTGAGGTAACGGAGATGGAAGCAATTTTGCTACAGCATAATACAGCAATGCCAGGTCGACATATTCTTGAAGCTCTTGCTGATAAGTTTAGTGAATCACCTGAGCGGAAGGGGAAAGTTGTTGTGCAGTTCAAGCAAATCTGGAACTGGTTTCAAAATAGGCGATATGCTTTACGAGCAAGGGGAAACAAAGCTCCTGGGAAGCTAAATGTATCTTCCATGCCGCGTATGGATTTACCAAATCAGATGAGAAGTGTGATTCAACCATTATCAGTTCCTAAAACCACTCATATGACTGGAAATTTACCCGGCATGACGCCTGCCCCTTCTGGTAGTTTAGTTCCCGGTGTCATGAGGAGTGGTTCAGACAACTCTTACTTGGAATTTGAAGCCAAATCTGCCAGGGATGGTGCATGGTATGATGTGCAAGCTTTCCTAGCTCATAGAAACTTGGAGATTGGTGATCCGGAAGTGCAGGTTCGATTTGCGGGTTTCGAAGTTGAAGAAGATGAATGGATAAATGTCAAAAAGCATGTAAGACAACGGTCTCTCCCATGTGAAGCATCAGAATGTGTTGCAGTTCTTGCTGGAGATCTCGTCCTTTGTTTCCAGGAAGGAAAAGATCAAGCTCTTTACTTTGACGCCATTGTTCTTGACGCACAGAGAAGAAGACATGATGTCAGAGGTTGTCGTTGTAGGTTCTTGGTGCGTTACAGCCACGACCAGTCCGAGCAGGAAATCGTTCCCTTGAGGAAGATTTGTCGGCGGCCCGAGACAGATTACAGGCTACAACAACTTCACAACGCCGTAAACGATTTGGCTAACTCAAATCAGCATCAGATACCCGCTCTAGATGCGGCTGCAAAAACCCCTCTGTCACTACCCGGAGCTACAGTTCCCATTGTTGCACCCGAGTCAAAAGATCCGAGCCTGAGTGCCACTCCAGCCACTTTGGTTCAGCCTAGCTCCAATGCAGCTACTGTTCCCGCTGGTTCAGCCTAG - >AT3G18380.3
ATGGGTCGACCTCCCAGTAATGGCGGTCCGGCGTTTCGATTTATCCTGCCTGAGGTAACGGAGATGGAAGCAATTTTGCTACAGCATAATACAGCAATGCCAGGTCGACATATTCTTGAAGCTCTTGCTGATAAGTTTAGTGAATCACCTGAGCGGAAGGGGAAAGTTGTTGTGCAGTTCAAGCAAATCTGGAACTGGTTTCAAAATAGGCGATATGCTTTACGAGCAAGGGGAAACAAAGCTCCTGGGAAGCTAAATGTATCTTCCATGCCGCGTATGGATTTACCAAATCAGATGAGAAGTGTGATTCAACCATTATCAGTTCCTAAAACCACTCATATGACTGGAAATTTACCCGGCATGACGCCTGCCCCTTCTGGTAGTTTAGTTCCCGGTGTCATGAGGAGTGGTTCAGACAACTCTTACTTGGAATTTGAAGCCAAATCTGCCAGGGATGGTGCATGGTATGATGTGCAAGCTTTCCTAGCTCATAGAAACTTGGAGATTGGTGATCCGGAAGTGCAGGTTCGATTTGCGGGTTTCGAAGTTGAAGAAGATGAATGGATAAATGTCAAAAAGCATGTAAGACAACGGTCTCTCCCATGTGAAGCATCAGAATGTGTTGCAGTTCTTGCTGGAGATCTCGTCCTTTGTTTCCAGGAAGGAAAAGATCAAGCTCTTTACTTTGACGCCATTGTTCTTGACGCACAGAGAAGAAGACATGATGTCAGAGGTTGTCGTTGTAGGTTCTTGGTGCGTTACAGCCACGACCAGTCCGAGCAGGAAATCGTTCCCTTGAGGAAGATTTGTCGGCGGCCCGAGACAGATTACAGGCTACAACAACTTCACAACGCCGTAAACGATTTGGCTAACTCAAATCAGCATCAGATACCCGCTCTAGATGCGGCTGCAAAAACCCCTCTGTCACTACCCGGAGCTACAGTTCCCATTGTTGCACCCGAGTCAAAAGATCCGAGCCTGAGTGCCACTCCAGCCACTTTGGTTCAGCCTAGCTCCAATGCAGCTACTGTTCCCGCTGGTTCAGCCTAG
Protein Sequence
- >AT3G18380.2
MGRPPSNGGPAFRFILPEVTEMEAILLQHNTAMPGRHILEALADKFSESPERKGKVVVQFKQIWNWFQNRRYALRARGNKAPGKLNVSSMPRMDLPNQMRSVIQPLSVPKTTHMTGNLPGMTPAPSGSLVPGVMRSGSDNSYLEFEAKSARDGAWYDVQAFLAHRNLEIGDPEVQVRFAGFEVEEDEWINVKKHVRQRSLPCEASECVAVLAGDLVLCFQEGKDQALYFDAIVLDAQRRRHDVRGCRCRFLVRYSHDQSEQEIVPLRKICRRPETDYRLQQLHNAVNDLANSNQHQIPALDAAAKTPLSLPGATVPIVAPESKDPSLSATPATLVQPSSNAATVPAGSA - >AT3G18380.1
MGRPPSNGGPAFRFILPEVTEMEAILLQHNTAMPGRHILEALADKFSESPERKGKVVVQFKQIWNWFQNRRYALRARGNKAPGKLNVSSMPRMDLPNQMRSVIQPLSVPKTTHMTGNLPGMTPAPSGSLVPGVMRSGSDNSYLEFEAKSARDGAWYDVQAFLAHRNLEIGDPEVQVRFAGFEVEEDEWINVKKHVRQRSLPCEASECVAVLAGDLVLCFQEGKDQALYFDAIVLDAQRRRHDVRGCRCRFLVRYSHDQSEQEIVPLRKICRRPETDYRLQQLHNAVNDLANSNQHQIPALDAAAKTPLSLPGATVPIVAPESKDPSLSATPATLVQPSSNAATVPAGSA - >AT3G18380.3
MGRPPSNGGPAFRFILPEVTEMEAILLQHNTAMPGRHILEALADKFSESPERKGKVVVQFKQIWNWFQNRRYALRARGNKAPGKLNVSSMPRMDLPNQMRSVIQPLSVPKTTHMTGNLPGMTPAPSGSLVPGVMRSGSDNSYLEFEAKSARDGAWYDVQAFLAHRNLEIGDPEVQVRFAGFEVEEDEWINVKKHVRQRSLPCEASECVAVLAGDLVLCFQEGKDQALYFDAIVLDAQRRRHDVRGCRCRFLVRYSHDQSEQEIVPLRKICRRPETDYRLQQLHNAVNDLANSNQHQIPALDAAAKTPLSLPGATVPIVAPESKDPSLSATPATLVQPSSNAATVPAGSA