Gene Details:
- Gene ID: AT3G16980
- Gene Symbol: NRPB9A, NRPD9A, NRPE9A
- Gene Name:
- Description: RNA polymerases M/15 Kd subunit;(source:Araport11)
- TAIR Accession: locus:2086042
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Gene Ontology:
- GO:0001193 — involved in — maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II
- GO:0006283 — involved in — transcription-coupled nucleotide-excision repair
- GO:0010629 — acts upstream of or within — negative regulation of gene expression
- GO:0098813 — acts upstream of or within — nuclear chromosome segregation
- GO:0005665 — part of — RNA polymerase II, core complex
- GO:0051276 — acts upstream of or within — chromosome organization
- GO:0005634 — located in — nucleus
- GO:0003899 — contributes to — DNA-directed 5-3 RNA polymerase activity
- GO:0036211 — acts upstream of or within — protein modification process
- GO:0006367 — involved in — transcription initiation at RNA polymerase II promoter
- GO:0010564 — acts upstream of or within — regulation of cell cycle process
- GO:0003676 — enables — nucleic acid binding
- GO:0005515 — enables — protein binding
- GO:0000280 — acts upstream of or within — nuclear division
- GO:0000419 — part of — RNA polymerase V complex
- GO:0008270 — enables — zinc ion binding
Function-related keywords:
Literature:
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II. DOI: 10.1016/j.molcel.2008.12.015 ; PMID: 19110459
- Gene expression profiling of the different stages of Arabidopsis thaliana trichome development on the single cell level. DOI: 10.1016/j.plaphy.2007.11.001 ; PMID: 18160300
Sequences:
cDNA Sequence
- >AT3G16980.1
CGCGACTCTGTTATTTAGAACGACGATCGCATTATTTTTCTCCTAATAAACAAAACGAGCCCGCCAGATTTCTCTGAGACAGTGATTCAGTTTTGGTTTTGGAACCTAATTCTCTCTCAAGAGATTCAGCTAAGATGAGTACTATGAAATTTTGCCGCGAATGTAATAACATTCTGTATCCTAAGGAGGACAAAGAACAGAAGATCCTCCTCTATGCTTGCCGTAATTGTGATCACCAGGAGGTAGCTGATAACAGCTGTGTGTACAGAAACGAGGTTCATCACTCTGTAAGTGAGCGAACTCAGATCTTAACAGACGTGGCTTCTGACCCTACTCTTCCCCGAACCAAGGCTGTGCGTTGCTCTAAGTGTCAGCATAGGGAGGCCGTTTTCTTCCAGGCTACGGCTAGAGGTGAAGAAGGAATGACACTGTTCTTTGTCTGTTGCAACCCGAATTGTGGTCATCGCTGGAGAGAATAAAGAGCTTTTCGGTTTCAATTGGTGAGTTCTTAAGAGTTTTAGGAGTTGATGTAGTTACCAGTAAGTGTAATATGTGGAATGACGGGAACAACCTTCTGCCCCAGTCAGAGACAAATCCGTATTCATGT
CDS Sequence
- >AT3G16980.1
ATGAGTACTATGAAATTTTGCCGCGAATGTAATAACATTCTGTATCCTAAGGAGGACAAAGAACAGAAGATCCTCCTCTATGCTTGCCGTAATTGTGATCACCAGGAGGTAGCTGATAACAGCTGTGTGTACAGAAACGAGGTTCATCACTCTGTAAGTGAGCGAACTCAGATCTTAACAGACGTGGCTTCTGACCCTACTCTTCCCCGAACCAAGGCTGTGCGTTGCTCTAAGTGTCAGCATAGGGAGGCCGTTTTCTTCCAGGCTACGGCTAGAGGTGAAGAAGGAATGACACTGTTCTTTGTCTGTTGCAACCCGAATTGTGGTCATCGCTGGAGAGAATAA
Protein Sequence
- >AT3G16980.1
MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILTDVASDPTLPRTKAVRCSKCQHREAVFFQATARGEEGMTLFFVCCNPNCGHRWRE