Information report for AT3G16920
Gene Details
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Functional Descriptions
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- GO:0009809 — acts upstream of or within — lignin biosynthetic process
- GO:0004568 — enables — chitinase activity
- GO:0005576 — located in — extracellular region
- GO:0005975 — involved in — carbohydrate metabolic process
- GO:0016998 — involved in — cell wall macromolecule catabolic process
- GO:0005886 — located in — plasma membrane
- GO:0006032 — involved in — chitin catabolic process
Functional Keywords
Literature and News
- Mutants of Arabidopsis thaliana defective in the acquisition of tolerance to high temperature stress. DOI: 10.1073/pnas.97.8.4392 ; PMID: 10760305
- Identification of novel genes in Arabidopsis involved in secondary cell wall formation using expression profiling and reverse genetics. DOI: 10.1105/tpc.105.031542 ; PMID: 15980264
- Biosynthesis of cellulose-enriched tension wood in Populus: global analysis of transcripts and metabolites identifies biochemical and developmental regulators in secondary wall biosynthesis. DOI: 10.1111/j.1365-313X.2005.02584.x ; PMID: 16367961
- The Populus homeobox gene ARBORKNOX1 reveals overlapping mechanisms regulating the shoot apical meristem and the vascular cambium. DOI: 10.1007/s11103-006-0059-y ; PMID: 16927204
- Gibberellin mobilizes distinct DELLA-dependent transcriptomes to regulate seed germination and floral development in Arabidopsis. DOI: 10.1104/pp.106.082289 ; PMID: 16920880
- Arabidopsis hot2 encodes an endochitinase-like protein that is essential for tolerance to heat, salt and drought stresses. DOI: 10.1111/j.1365-313X.2006.02950.x ; PMID: 17156413
- GeneCAT–novel webtools that combine BLAST and co-expression analyses. DOI: 10.1093/nar/gkn292 ; PMID: 18480120
- CressExpress: a tool for large-scale mining of expression data from Arabidopsis. DOI: 10.1104/pp.107.115535 ; PMID: 18467456
- AtERF38 (At2g35700), an AP2/ERF family transcription factor gene from Arabidopsis thaliana, is expressed in specific cell types of roots, stems and seeds that undergo suberization. DOI: 10.1016/j.plaphy.2008.07.003 ; PMID: 18723362
- Transcriptomic analysis of Arabidopsis developing stems: a close-up on cell wall genes. DOI: 10.1186/1471-2229-9-6 ; PMID: 19149885
- Gibberellin acts through jasmonate to control the expression of MYB21, MYB24, and MYB57 to promote stamen filament growth in Arabidopsis. DOI: 10.1371/journal.pgen.1000440 ; PMID: 19325888
- Mechanical load induces upregulation of transcripts for a set of genes implicated in secondary wall formation in the supporting tissue of Arabidopsis thaliana. DOI: 10.1007/s10265-009-0251-7 ; PMID: 19582540
- Mutation of the chitinase-like protein-encoding AtCTL2 gene enhances lignin accumulation in dark-grown Arabidopsis seedlings. DOI: 10.1016/j.jplph.2009.12.001 ; PMID: 20056293
- An integrative approach to the identification of Arabidopsis and rice genes involved in xylan and secondary wall development. DOI: 10.1371/journal.pone.0015481 ; PMID: 21124849
- Chitinase-like1/pom-pom1 and its homolog CTL2 are glucan-interacting proteins important for cellulose biosynthesis in Arabidopsis. DOI: 10.1105/tpc.111.094672 ; PMID: 22327741
- Arabidopsis cell wall composition determines disease resistance specificity and fitness. DOI: 10.1073/pnas.2010243118 ; PMID: 33509925
- Identification of novel genes in Arabidopsis involved in secondary cell wall formation using expression profiling and reverse genetics. DOI: 10.1105/tpc.105.031542 ; PMID: 15980264
Gene Resources
- UniProt: A0A178VF03
- EMBL: CACRSJ010000106, CACSHJ010000089, LR881468
- AlphaFoldDB: A0A178VF03
- EnsemblPlants: AT3G16920.1
- Gramene: AT3G16920.1
- KEGG: ath:AT3G16920
- Orthologous matrix: MTPPEKH
- ExpressionAtlas: AT3G16920
- InterPro: IPR000726, IPR016283, IPR023346
- PANTHER: PTHR22595, PTHR22595:SF176
- SUPFAM: SSF53955
- Gene3D: 1.10.530.10, 3.30.20.10
- OrthoDB: A0A178VF03
- SWISS-MODEL: A0A178VF03
- Conserved Domain Database: cd00325
Homologs
- Brachypodium distachyon Bradi2g47191
- Cucumis sativus CsChi23
- Oryza sativa bc15;OsCTL1, Cht-2, Cht-3, RCH10, RC24, CHIA1;175, chi11;OsCHI11
Sequences
cDNA Sequence
- >AT3G16920.1
ATGGTTTCGAAACCGCTATTCTCCCTATTGCTTCTCACGGTTGCATTGGTTGTGTTTCAAACCGGAACCCTTGTCAACGCTGAAGATTCCGAGCCTTCGAGTTCAACGAGAAAGCCTCTGGTGAAGATTGTGAAAGGTAAAAAATTATGCGACAAAGGATGGGAATGCAAAGGATGGTCCGAGTATTGTTGCAACCATACAATCTCCGATTTTTTTGAGACATATCAATTCGAGAATCTATTCTCTAAGCGTAACAGTCCAGTGGCTCACGCCGTCGGCTTTTGGGATTACCGATCATTCATTACTGCGGCTGCCGAGTACCAGCCTCTTGGTTTCGGTACTGCTGGTGAGAAACTTCAAGGGATGAAGGAAGTCGCTGCGTTTCTTGGCCACGTTGGGAGCAAAACCTCATGCGGGTACGGGGTTGCAACAGGCGGACCATTAGCTTGGGGATTGTGTTACAACAAGGAGATGAGTCCTGATCAGCTTTATTGCGATGATTACTACAAATTGACATATCCTTGTACTCCTGGTGTCTCGTACCACGGTCGAGGAGCTTTACCGGTTTACTGGAATTACAATTATGGTCAAACCGGGGAGGCTTTGAAAGTGGATCTACTGAGTCATCCAGAGTATCTCGAGAACAATGCTACGTTAGCGTTTCAAGCGGCGATTTGGCGGTGGATGACGCCACCGAAGAAGCATTTACCGTCGGCGCACGATGTTTTCGTCGGAAAATGGAAGCCAACAAAGAATGACACTGCTGCAAAACGAACTCCGGGGTTTGGAGCCACCATAAACGTTCTTTACGGCGATCAAATCTGCAACAGCGGATTCGATAACGATGAGATGAACAACATTGTTTCTCATTATTTGTATTATCTTGATCTGATAGGTGTTGGACGAGAAGAAGCTGGTCCTCACGAGAAGCTGTCATGCGCAGATCAAGAACCTTTTTCTTCTTCCTCCTCTGCTCCTCCGAGTTCTGGTTCCTCTTCTTGA - >AT3G16920.2
ATGGTTTCGAAACCGCTATTCTCCCTATTGCTTCTCACGGTTGCATTGGTTGTGTTTCAAACCGGAACCCTTGTCAACGCTGAAGATTCCGAGCCTTCGAGTTCAACGAGAAAGCCTCTGGTGAAGATTGTGAAAGGTAAAAAATTATGCGACAAAGGATGGGAATGCAAAGGATGGTCCGAGTATTGTTGCAACCATACAATCTCCGATTTTTTTGAGACATATCAATTCGAGAATCTATTCTCTAAGCGTAACAGTCCAGTGGCTCACGCCGTCGGCTTTTGGGATTACCGATCATTCATTACTGCGGCTGCCGAGTACCAGCCTCTTGGTTTCGGTACTGCTGGTGAGAAACTTCAAGGGATGAAGGAAGTCGCTGCGTTTCTTGGCCACGTTGGGAGCAAAACCTCATGCGGGTACGGGGTTGCAACAGGCGGACCATTAGCTTGGGGATTGTGTTACAACAAGGAGATGAGTCCTGATCAGCTTTATTGCGATGATTACTACAAATTGACATATCCTTGTACTCCTGGTGTCTCGTACCACGGTCGAGGAGCTTTACCGGTTTACTGGAATTACAATTATGGTCAAACCGGGGAGGCTTTGAAAGTGGATCTACTGAGTCATCCAGAGTATCTCGAGAACAATGCTACGTTAGCGTTTCAAGCGGCGATTTGGCGGTGGATGACGCCACCGAAGAAGCATTTACCGTCGGCGCACGATGTTTTCGTCGGAAAATGGAAGCCAACAAAGAATGACACTGCTGCAAAACGAACTCCGGGGTTTGGAGCCACCATAAACGTTCTTTACGGCGATCAAATCTGCAACAGCGGATTCGATAACGATGAGATGAACAACATTGTTTCTCATTATTTGTATTATCTTGATCTGATAGGTGTTGGACGAGAAGAAGCTGGTCCTCACGAGAAGCTGTCATGCGCAGATCAAGAACCTTTTTCTTCTTCCTCCTCTGCTCCTCCGAGTTCTGGTTCCTCTTCTTGA
CDS Sequence
- >AT3G16920.1
ATGGTTTCGAAACCGCTATTCTCCCTATTGCTTCTCACGGTTGCATTGGTTGTGTTTCAAACCGGAACCCTTGTCAACGCTGAAGATTCCGAGCCTTCGAGTTCAACGAGAAAGCCTCTGGTGAAGATTGTGAAAGGTAAAAAATTATGCGACAAAGGATGGGAATGCAAAGGATGGTCCGAGTATTGTTGCAACCATACAATCTCCGATTTTTTTGAGACATATCAATTCGAGAATCTATTCTCTAAGCGTAACAGTCCAGTGGCTCACGCCGTCGGCTTTTGGGATTACCGATCATTCATTACTGCGGCTGCCGAGTACCAGCCTCTTGGTTTCGGTACTGCTGGTGAGAAACTTCAAGGGATGAAGGAAGTCGCTGCGTTTCTTGGCCACGTTGGGAGCAAAACCTCATGCGGGTACGGGGTTGCAACAGGCGGACCATTAGCTTGGGGATTGTGTTACAACAAGGAGATGAGTCCTGATCAGCTTTATTGCGATGATTACTACAAATTGACATATCCTTGTACTCCTGGTGTCTCGTACCACGGTCGAGGAGCTTTACCGGTTTACTGGAATTACAATTATGGTCAAACCGGGGAGGCTTTGAAAGTGGATCTACTGAGTCATCCAGAGTATCTCGAGAACAATGCTACGTTAGCGTTTCAAGCGGCGATTTGGCGGTGGATGACGCCACCGAAGAAGCATTTACCGTCGGCGCACGATGTTTTCGTCGGAAAATGGAAGCCAACAAAGAATGACACTGCTGCAAAACGAACTCCGGGGTTTGGAGCCACCATAAACGTTCTTTACGGCGATCAAATCTGCAACAGCGGATTCGATAACGATGAGATGAACAACATTGTTTCTCATTATTTGTATTATCTTGATCTGATAGGTGTTGGACGAGAAGAAGCTGGTCCTCACGAGAAGCTGTCATGCGCAGATCAAGAACCTTTTTCTTCTTCCTCCTCTGCTCCTCCGAGTTCTGGTTCCTCTTCTTGA - >AT3G16920.2
ATGGTTTCGAAACCGCTATTCTCCCTATTGCTTCTCACGGTTGCATTGGTTGTGTTTCAAACCGGAACCCTTGTCAACGCTGAAGATTCCGAGCCTTCGAGTTCAACGAGAAAGCCTCTGGTGAAGATTGTGAAAGGTAAAAAATTATGCGACAAAGGATGGGAATGCAAAGGATGGTCCGAGTATTGTTGCAACCATACAATCTCCGATTTTTTTGAGACATATCAATTCGAGAATCTATTCTCTAAGCGTAACAGTCCAGTGGCTCACGCCGTCGGCTTTTGGGATTACCGATCATTCATTACTGCGGCTGCCGAGTACCAGCCTCTTGGTTTCGGTACTGCTGGTGAGAAACTTCAAGGGATGAAGGAAGTCGCTGCGTTTCTTGGCCACGTTGGGAGCAAAACCTCATGCGGGTACGGGGTTGCAACAGGCGGACCATTAGCTTGGGGATTGTGTTACAACAAGGAGATGAGTCCTGATCAGCTTTATTGCGATGATTACTACAAATTGACATATCCTTGTACTCCTGGTGTCTCGTACCACGGTCGAGGAGCTTTACCGGTTTACTGGAATTACAATTATGGTCAAACCGGGGAGGCTTTGAAAGTGGATCTACTGAGTCATCCAGAGTATCTCGAGAACAATGCTACGTTAGCGTTTCAAGCGGCGATTTGGCGGTGGATGACGCCACCGAAGAAGCATTTACCGTCGGCGCACGATGTTTTCGTCGGAAAATGGAAGCCAACAAAGAATGACACTGCTGCAAAACGAACTCCGGGGTTTGGAGCCACCATAAACGTTCTTTACGGCGATCAAATCTGCAACAGCGGATTCGATAACGATGAGATGAACAACATTGTTTCTCATTATTTGTATTATCTTGATCTGATAGGTGTTGGACGAGAAGAAGCTGGTCCTCACGAGAAGCTGTCATGCGCAGATCAAGAACCTTTTTCTTCTTCCTCCTCTGCTCCTCCGAGTTCTGGTTCCTCTTCTTGA
Protein Sequence
- >AT3G16920.1
MVSKPLFSLLLLTVALVVFQTGTLVNAEDSEPSSSTRKPLVKIVKGKKLCDKGWECKGWSEYCCNHTISDFFETYQFENLFSKRNSPVAHAVGFWDYRSFITAAAEYQPLGFGTAGEKLQGMKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPDQLYCDDYYKLTYPCTPGVSYHGRGALPVYWNYNYGQTGEALKVDLLSHPEYLENNATLAFQAAIWRWMTPPKKHLPSAHDVFVGKWKPTKNDTAAKRTPGFGATINVLYGDQICNSGFDNDEMNNIVSHYLYYLDLIGVGREEAGPHEKLSCADQEPFSSSSSAPPSSGSSS - >AT3G16920.2
MVSKPLFSLLLLTVALVVFQTGTLVNAEDSEPSSSTRKPLVKIVKGKKLCDKGWECKGWSEYCCNHTISDFFETYQFENLFSKRNSPVAHAVGFWDYRSFITAAAEYQPLGFGTAGEKLQGMKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPDQLYCDDYYKLTYPCTPGVSYHGRGALPVYWNYNYGQTGEALKVDLLSHPEYLENNATLAFQAAIWRWMTPPKKHLPSAHDVFVGKWKPTKNDTAAKRTPGFGATINVLYGDQICNSGFDNDEMNNIVSHYLYYLDLIGVGREEAGPHEKLSCADQEPFSSSSSAPPSSGSSS