Information report for AT3G16850
Gene Details
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Functional Descriptions
- GO:0004650 — enables — polygalacturonase activity
- GO:0033993 — acts upstream of or within — response to lipid
- GO:0040007 — acts upstream of or within — growth
- GO:0044255 — acts upstream of or within — cellular lipid metabolic process
- GO:0005576 — located in — extracellular region
- GO:0008610 — acts upstream of or within — lipid biosynthetic process
- GO:0000325 — located in — plant-type vacuole
- GO:0014070 — acts upstream of or within — response to organic cyclic compound
- GO:0030154 — acts upstream of or within — cell differentiation
- GO:0099503 — located in — secretory vesicle
- GO:0005975 — involved in — carbohydrate metabolic process
Functional Keywords
Literature and News
- The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. DOI: 10.1105/tpc.104.027078 ; PMID: 15539469
- Patterns of expansion and expression divergence in the plant polygalacturonase gene family. DOI: 10.1186/gb-2006-7-9-r87 ; PMID: 17010199
- Rhizobacterial volatile emissions regulate auxin homeostasis and cell expansion in Arabidopsis. DOI: 10.1007/s00425-007-0530-2 ; PMID: 17497164
- GeneCAT–novel webtools that combine BLAST and co-expression analyses. DOI: 10.1093/nar/gkn292 ; PMID: 18480120
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106. DOI: 10.1104/pp.108.126979 ; PMID: 18805951
- A new picture of cell wall protein dynamics in elongating cells of Arabidopsis thaliana: confirmed actors and newcomers. DOI: 10.1186/1471-2229-8-94 ; PMID: 18796151
- Differentiation of Arabidopsis guard cells: analysis of the networks incorporating the basic helix-loop-helix transcription factor, FAMA. DOI: 10.1104/pp.110.167718 ; PMID: 21245191
- The pectin lyases in Arabidopsis thaliana: evolution, selection and expression profiles. DOI: 10.1371/journal.pone.0046944 ; PMID: 23056537
- The exogenous application of AtPGLR, an endo-polygalacturonase, triggers pollen tube burst and repair. DOI: 10.1111/tpj.14753 ; PMID: 32215973
- Biochemical characterization of Arabidopsis clade F polygalacturonase shows a substrate preference toward oligogalacturonic acids. DOI: 10.1016/j.jbiosc.2021.08.007 ; PMID: 34690060
- The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. DOI: 10.1105/tpc.104.027078 ; PMID: 15539469
- A sub-proteome of Arabidopsis thaliana mature stems trapped on Concanavalin A is enriched in cell wall glycoside hydrolases. DOI: 10.1093/jxb/erm082 ; PMID: 17526915
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: Q94C86
- EMBL: AY035074, AY113876, CP002686
- AlphaFoldDB: Q94C86
- EnsemblPlants: AT3G16850.1
- Gramene: AT3G16850.1
- KEGG: ath:AT3G16850
- Orthologous matrix: ESNDAIC
- ExpressionAtlas: AT3G16850
- InterPro: IPR000743, IPR006626, IPR011050
- PANTHER: PTHR31339, PTHR31339:SF15
- SUPFAM: SSF51126
- Gene3D: 2.160.20.10
- SWISS-MODEL: Q94C86
Homologs
- Brassica napus GSBRNA2T00139307001, GSBRNA2T00078063001
- Brassica oleracea Bo7g083770, Bol042823, Bo8g094600
- Brassica rapa Brara.F03263
- Glycine max Glyma.18G156000.1.p
- Malus domestica Md-PG1
- Oryza sativa OsPG2, PSL1;OsPG1
- Petunia inflata Peinf101Scf04194g00019.1
- Pyrus bretschneideri Pbr023394.1
- Zea mays Zm00001d010681
Sequences
cDNA Sequence
- >AT3G16850.1
TGATTAGTTACTGGGATCAAACAAAATGATTAATATTAATATTAATAGCAAATTCCAACAAACAGTAAGTGTTAAACAAATAATAACATGTACTTGTTTCGCAACTCTCTCTTCATCTCCTCTTCCTCTGGTCTTTTTTTCTTTTGTTGCGACTTTTCTTCTTCTTCTTCCTCAGGAACTTAAGTTTCTGAGTCCATGAAGATGCCAGTGGCATTGGTCTGGCTACTGGCATTCACTATTCTACTGATCAGTGGGGAAGGCAATAATGCCATCTGCAAGGAGAATTTTAAGTTAGACCCTAGACCTCATAGTGTTTCGATCCTCGAGTTTGGAGCGGTTGGTGATGGGAAGACGCTCAACACTATTGCTTTCCAGAACGCTGTTTTCTATCTCAAGTCTTTTGCGGATAAAGGCGGTGCTCAGCTTTATGTTCCACCAGGGAAATGGCTCACCGGAAGCTTCAATCTCACAAGCCATCTCACTCTCTTCTTGGAGAAAGGAGCAACAATTCTTGCATCACCGGATCCGTCGCATTGGGACGTTGTCAGTCCTCTACCGTCCTATGGTCGCGGAATTGAACTTCCTGGAAAGCGGTACAGAAGTTTGATCAATGGAGACAATCTAATAGACGTAGTCATCACCGGTGAAAATGGGACATTTGACGGTCAAGGTGCGGCATGGTGGGAGTGGCTTGAGTCCGGGTCCTTGAACTATAGCCGACCTCATATCATCGAATTCGTCTCCTCTAAACACATCCTCATATCGAATCTAACCTTCTTAAACGCGCCCGCAATCAACATTCACCCTGTTTATTGCAGTCAGATTCATATCCGCAAAGTTTTGATCGAAACATCCGTTGATTCTCCCCACGTTCTTGGAGTTGCCCCAGATTCTTCGGACAATGTTTGTATCGAGGACTCAACAATCAACGTTGGCCACGACGCGGTTTCTCTCAAGAGTGGTTGGGACCAATACGGTATACACTACGGCCGTCCAACCACCGCTGTTCATATTCGGAATCTCAGATTAAAGTCTCCCACCGGTGCTGGAATCTCCTTCGGGAGCGAGATGTCAGGCGGAGTCTCGGATGTGACCGTTGAGCGTCTTAACATACACAGCTCACTCATAGGTGTAGCCTTCAGAACCACCAGAGGCAGAGGAGGATACATCCGTAATATCACAATCTCCGACGTCGATCTCACAAGCGTTGACACAGCCATAGTAGCCAACGGACACACCGGGTCACACCCGGATGATAAATTCGACCGGGACGCACTCCCAGTCGTGACACACATTGTTATGCGGAATTTCACCGGAGTTGATATAGGAGTAGCCGGGAATCTCACCGGGATCGGAGAATCTCCCTTCACGTCGATATGCCTCGCGGATATTCATTTACAAACGCGATCAGAAGAATCTTGGATATGCTCCAACGTCTCTGGTTTCTCAGACGACGTATCACCGGAGCCTTGTCAAGAACTCATGAGTTCTCCTTCGTCTTGCTTCGCCGGTGGTAGCATATACGAGGGTGATGCGACGGCTCAGTCGTATTACAGTTGGTAATTATAGTAAAATAAAATGGTGATGAAGAAGAAGAAGAAGAAAAAGAAGAAGAGAGTGCATGAGGTTACGATACGATTGGATTTTCGAATTTTTTTTGTCAATAAGTTCATAAAATTTGTTGTCAGAGAGCGAGAGGAAGAAGATAAAAAAAGAAAAATTACGTTTTAAGGTGGTGAGTTTCAAGAACAGAGCGAGCTTTTCTATTGTATTAATGTACAGCTTCCATTTCTTTCATTCATGGTGTAACAAAATTCATCTTTTTTTCTTTCTGTGAAGAAGAAAATAAAAAATTATATGTGAAATGATTAGTTATGTCTTGG
CDS Sequence
- >AT3G16850.1
ATGAAGATGCCAGTGGCATTGGTCTGGCTACTGGCATTCACTATTCTACTGATCAGTGGGGAAGGCAATAATGCCATCTGCAAGGAGAATTTTAAGTTAGACCCTAGACCTCATAGTGTTTCGATCCTCGAGTTTGGAGCGGTTGGTGATGGGAAGACGCTCAACACTATTGCTTTCCAGAACGCTGTTTTCTATCTCAAGTCTTTTGCGGATAAAGGCGGTGCTCAGCTTTATGTTCCACCAGGGAAATGGCTCACCGGAAGCTTCAATCTCACAAGCCATCTCACTCTCTTCTTGGAGAAAGGAGCAACAATTCTTGCATCACCGGATCCGTCGCATTGGGACGTTGTCAGTCCTCTACCGTCCTATGGTCGCGGAATTGAACTTCCTGGAAAGCGGTACAGAAGTTTGATCAATGGAGACAATCTAATAGACGTAGTCATCACCGGTGAAAATGGGACATTTGACGGTCAAGGTGCGGCATGGTGGGAGTGGCTTGAGTCCGGGTCCTTGAACTATAGCCGACCTCATATCATCGAATTCGTCTCCTCTAAACACATCCTCATATCGAATCTAACCTTCTTAAACGCGCCCGCAATCAACATTCACCCTGTTTATTGCAGTCAGATTCATATCCGCAAAGTTTTGATCGAAACATCCGTTGATTCTCCCCACGTTCTTGGAGTTGCCCCAGATTCTTCGGACAATGTTTGTATCGAGGACTCAACAATCAACGTTGGCCACGACGCGGTTTCTCTCAAGAGTGGTTGGGACCAATACGGTATACACTACGGCCGTCCAACCACCGCTGTTCATATTCGGAATCTCAGATTAAAGTCTCCCACCGGTGCTGGAATCTCCTTCGGGAGCGAGATGTCAGGCGGAGTCTCGGATGTGACCGTTGAGCGTCTTAACATACACAGCTCACTCATAGGTGTAGCCTTCAGAACCACCAGAGGCAGAGGAGGATACATCCGTAATATCACAATCTCCGACGTCGATCTCACAAGCGTTGACACAGCCATAGTAGCCAACGGACACACCGGGTCACACCCGGATGATAAATTCGACCGGGACGCACTCCCAGTCGTGACACACATTGTTATGCGGAATTTCACCGGAGTTGATATAGGAGTAGCCGGGAATCTCACCGGGATCGGAGAATCTCCCTTCACGTCGATATGCCTCGCGGATATTCATTTACAAACGCGATCAGAAGAATCTTGGATATGCTCCAACGTCTCTGGTTTCTCAGACGACGTATCACCGGAGCCTTGTCAAGAACTCATGAGTTCTCCTTCGTCTTGCTTCGCCGGTGGTAGCATATACGAGGGTGATGCGACGGCTCAGTCGTATTACAGTTGGTAA
Protein Sequence
- >AT3G16850.1
MKMPVALVWLLAFTILLISGEGNNAICKENFKLDPRPHSVSILEFGAVGDGKTLNTIAFQNAVFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGATILASPDPSHWDVVSPLPSYGRGIELPGKRYRSLINGDNLIDVVITGENGTFDGQGAAWWEWLESGSLNYSRPHIIEFVSSKHILISNLTFLNAPAINIHPVYCSQIHIRKVLIETSVDSPHVLGVAPDSSDNVCIEDSTINVGHDAVSLKSGWDQYGIHYGRPTTAVHIRNLRLKSPTGAGISFGSEMSGGVSDVTVERLNIHSSLIGVAFRTTRGRGGYIRNITISDVDLTSVDTAIVANGHTGSHPDDKFDRDALPVVTHIVMRNFTGVDIGVAGNLTGIGESPFTSICLADIHLQTRSEESWICSNVSGFSDDVSPEPCQELMSSPSSCFAGGSIYEGDATAQSYYSW