Information report for AT3G16810
Gene Details
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Functional Descriptions
- GO:0009793 — acts upstream of or within — embryo development ending in seed dormancy
- GO:0006417 — involved in — regulation of translation
- GO:0005730 — located in — nucleolus
- GO:0003723 — enables — RNA binding
- GO:0005634 — located in — nucleus
- GO:0003729 — enables — mRNA binding
- GO:0005730 — is active in — nucleolus
- apum24-1 — Heterozygotes segregate for embryo lethality. Embryos arrest by globular stage.
Functional Keywords
Literature and News
- Arabidopsis response regulator, ARR22, ectopic expression of which results in phenotypes similar to the wol cytokinin-receptor mutant. DOI: 10.1093/pcp/pch128 ; PMID: 15356332
- Combinatorial microarray analysis revealing arabidopsis genes implicated in cytokinin responses through the His->Asp Phosphorelay circuitry. DOI: 10.1093/pcp/pci033 ; PMID: 15695462
- Molecular characterization of Arabidopsis thaliana PUF proteins–binding specificity and target candidates. DOI: 10.1111/j.1742-4658.2009.07230.x ; PMID: 19682068
- The Puf family of RNA-binding proteins in plants: phylogeny, structural modeling, activity and subcellular localization. DOI: 10.1186/1471-2229-10-44 ; PMID: 20214804
- An Arabidopsis divergent pumilio protein, APUM24, is essential for embryogenesis and required for faithful pre-rRNA processing. DOI: 10.1111/tpj.13745 ; PMID: 29031033
- Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. DOI: 10.1186/s12870-018-1255-z ; PMID: 29490615
- Overexpression of a Brix Domain-Containing Ribosome Biogenesis Factor ARPF2 and its Interactor ARRS1 Causes Morphological Changes and Lifespan Extension in Arabidopsis thaliana. DOI: 10.3389/fpls.2018.01177 ; PMID: 30210511
- Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis. DOI: 10.1111/nph.16071 ; PMID: 31334862
- Plant PUF RNA-binding proteins: A wealth of diversity for post-transcriptional gene regulation. DOI: 10.1016/j.plantsci.2020.110505 ; PMID: 32563454
- Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. DOI: 10.1091/mbc.e04-09-0791 ; PMID: 15496452
- Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. DOI: 10.1021/pr1009433 ; PMID: 21166475
Gene Resources
- UniProt: A0A178VDC1
- EMBL: CACRSJ010000106, CACSHJ010000089, LUHQ01000003
- AlphaFoldDB: A0A178VDC1
- EnsemblPlants: AT3G16810.1
- Gramene: AT3G16810.1
- KEGG: ath:AT3G16810
- Orthologous matrix: GKCEMWA
- ExpressionAtlas: AT3G16810
- InterPro: IPR001313, IPR011989, IPR012959
- PANTHER: PTHR13389, PTHR13389:SF0
- SUPFAM: SSF48371
- PROSITE: PS50302, PS50303
- Gene3D: 1.25.10.10
- OrthoDB: A0A178VDC1
- SWISS-MODEL: A0A178VDC1
Homologs
- Actinidia chinensis Achn212121
Sequences
cDNA Sequence
- >AT3G16810.1
AAATTCCGCCAAACAAAACTGTATCGCCGTCTCTCTTCTTCCTCAAAAACCCTAGAAACTGTAAAACCCTTGCCTATCTCTTACACACACCACCATCACAGTTCAACTTTTGTTTGTCAACAACAATGTCTTCCAAAGGTCTGAAACCTCAGAAATCAACCAAGAGGAAGGACACCGATAGCTCTGCCAAATTCGATTCTCTAAAATCAAAGAAGCCAAAGCTAGTGTCTGGAGAACAACAACAACATGTGAAACCTAAATTTGGTAAACCCAAATCTGCAGGTGATAAGGAGCAGAGTACTAATCTATCGAAGAAGGAGCGTCGTGTACAGGCTAAGGAGCTAACAGAAGCTAGGAAGAAGAAGAGAAAGCCTCATTACAATCTTGAGCAAGAGCTTGTATCTCTATGGGAGAAGATGAGACGCCGTAATATCGGCAAGGAGGATCGATCAAAGCTGATTTCTGAAGCTATAAGGAAGATGAAGGGGAAGGTTCCAGAGATTGCAGTCTCACATGTTTCATCTCGTGTACTTCAGACTTGTGTGAAGTTTTGCTCACAAGCTGAGAAAGATGTTCTCTTCACGGAACTCCAGCCACAGTTTCTTAACCTTGCTTCTAACAAATATGCTGTTCACTTTATACAGAAGATGTTGGATGGAGCATCTAAGCAGCAGCTGGCAGCTTGTATATCCAGCCTCAGGGGACATGTTGCTCCTCTTCTCCGTCATGTGTTCGGATCTCTTGTTGTGGAGCATGCATACCATCTGGGAAGTGCAGCACAAAAACAAGAACTCCTTGCAGAATTGTATTCTACTGAGCTTCAGTTATTCAAGGGCTTGACCACATCTAACGAAAAAACGGTGGTGGACATCATTGCTAAGCTGGGACTGCAAAAAGGCGCTGTTAACCGACACATGACTGCCATTATCCAACCGATACTTGAGAAGGGAATTGTCGACCACACTATCACACACAAATTGCTGATTGAATACCTGACAATAGCTGATAAGACTTCTGCTGCAGATGTGCTTCAGCTACTGACAGGCTCCCTTCTTTTGCGTATGGTTCATACCCGTGATGGTTCTAGGCTTGCCATGCTTTCTATCAAACATGGAAGCGCTAAGGAGAGAAAGAAGATTATCAAAGCAATGAAAGAGCATGTTAAAAAGATGGCTTTTGATCAGTTTGGAAGTATGGTGCTTGCATGTATTTTTTCAATAGTTGATGACACAAAGCTCGTGACCAAGATAATTGTTCGTGAGCTTGAGGCCACCCTAAAGGATCTTGTTATGGACAAGAATGGTAGGAGACCGCTATTGCAGCTACTGCATCCAAATTCCTCACGTTATTTAAGCCATGATGATTTGGCCGCTCTTGATCTTTCTGTTCCATCACTCTGCTCAATGGATAAGTCAGAGACATCCTCTAAAACAAAGGACACAGATGGTAACGAAATTGGTGAGGAGACGAAGGATGAACAAGAAGATACAGTAGCTGAACATTCTGATCATGAAGAAAACGTCACAGCTATGGGTGGTAAAAAAGACCCCCTTGTGAGAAGACAGGAGTTGCTTGTCAACAGTGGCCTTGCTGAGAGGCTTATTGATGTGTGTGTGGAGAACGCCGAGGAATTCCTCCAGTCAAAATTTGGCAATGAGGTCATGTATGAGGTTGCAATCGGAGGCTCTGATGGTATTCTCTGCCCATCTCTGAGCGAGAAGCTGTGTGAGCTGTACGAAGCTATTAGCTCTGTAGCAGCAGAACCGAAACCCCAAGAATCTGAGAAGGATTCAGAACACATCCTGGAAAACTTTCACTCAAGTCGGACCATAAGAAGGCTTGTCTTGAATCGCCCTGGTTTCGCGTCCATTCTCTTTAAGAAGGCCTTGTCTGGAAAATGTCGGTCGTGGGCACAAGGACACTGTTCAAAGATACTATCTGCTTTCGTAGAGACTGAAGATGTTCAAGTTCGTGAGATGGCTAAAACAGAGCTTCAGGTGTTGGTGAATGAAGGTACTCTGAAGATCTCAGCAACCAAGAAACCTGAATGATGCAACGGCCTCACTTGGCTTTCAGAATTGCGAATATTATGGCAAATTTTGTCCTTTTGTCACTATAAAGGGTAGAAGCAAATCCTCTTTATGACAAAACTGAAAACTAATCCTTGTCACAAAACTCATCAATGTTGGATATTATATATGAAATAGTTTTTTCTTTTAAAATTGTTTATTCAAGTCTTGAGTTATGATTTTGATTGGATTTATT
CDS Sequence
- >AT3G16810.1
ATGTCTTCCAAAGGTCTGAAACCTCAGAAATCAACCAAGAGGAAGGACACCGATAGCTCTGCCAAATTCGATTCTCTAAAATCAAAGAAGCCAAAGCTAGTGTCTGGAGAACAACAACAACATGTGAAACCTAAATTTGGTAAACCCAAATCTGCAGGTGATAAGGAGCAGAGTACTAATCTATCGAAGAAGGAGCGTCGTGTACAGGCTAAGGAGCTAACAGAAGCTAGGAAGAAGAAGAGAAAGCCTCATTACAATCTTGAGCAAGAGCTTGTATCTCTATGGGAGAAGATGAGACGCCGTAATATCGGCAAGGAGGATCGATCAAAGCTGATTTCTGAAGCTATAAGGAAGATGAAGGGGAAGGTTCCAGAGATTGCAGTCTCACATGTTTCATCTCGTGTACTTCAGACTTGTGTGAAGTTTTGCTCACAAGCTGAGAAAGATGTTCTCTTCACGGAACTCCAGCCACAGTTTCTTAACCTTGCTTCTAACAAATATGCTGTTCACTTTATACAGAAGATGTTGGATGGAGCATCTAAGCAGCAGCTGGCAGCTTGTATATCCAGCCTCAGGGGACATGTTGCTCCTCTTCTCCGTCATGTGTTCGGATCTCTTGTTGTGGAGCATGCATACCATCTGGGAAGTGCAGCACAAAAACAAGAACTCCTTGCAGAATTGTATTCTACTGAGCTTCAGTTATTCAAGGGCTTGACCACATCTAACGAAAAAACGGTGGTGGACATCATTGCTAAGCTGGGACTGCAAAAAGGCGCTGTTAACCGACACATGACTGCCATTATCCAACCGATACTTGAGAAGGGAATTGTCGACCACACTATCACACACAAATTGCTGATTGAATACCTGACAATAGCTGATAAGACTTCTGCTGCAGATGTGCTTCAGCTACTGACAGGCTCCCTTCTTTTGCGTATGGTTCATACCCGTGATGGTTCTAGGCTTGCCATGCTTTCTATCAAACATGGAAGCGCTAAGGAGAGAAAGAAGATTATCAAAGCAATGAAAGAGCATGTTAAAAAGATGGCTTTTGATCAGTTTGGAAGTATGGTGCTTGCATGTATTTTTTCAATAGTTGATGACACAAAGCTCGTGACCAAGATAATTGTTCGTGAGCTTGAGGCCACCCTAAAGGATCTTGTTATGGACAAGAATGGTAGGAGACCGCTATTGCAGCTACTGCATCCAAATTCCTCACGTTATTTAAGCCATGATGATTTGGCCGCTCTTGATCTTTCTGTTCCATCACTCTGCTCAATGGATAAGTCAGAGACATCCTCTAAAACAAAGGACACAGATGGTAACGAAATTGGTGAGGAGACGAAGGATGAACAAGAAGATACAGTAGCTGAACATTCTGATCATGAAGAAAACGTCACAGCTATGGGTGGTAAAAAAGACCCCCTTGTGAGAAGACAGGAGTTGCTTGTCAACAGTGGCCTTGCTGAGAGGCTTATTGATGTGTGTGTGGAGAACGCCGAGGAATTCCTCCAGTCAAAATTTGGCAATGAGGTCATGTATGAGGTTGCAATCGGAGGCTCTGATGGTATTCTCTGCCCATCTCTGAGCGAGAAGCTGTGTGAGCTGTACGAAGCTATTAGCTCTGTAGCAGCAGAACCGAAACCCCAAGAATCTGAGAAGGATTCAGAACACATCCTGGAAAACTTTCACTCAAGTCGGACCATAAGAAGGCTTGTCTTGAATCGCCCTGGTTTCGCGTCCATTCTCTTTAAGAAGGCCTTGTCTGGAAAATGTCGGTCGTGGGCACAAGGACACTGTTCAAAGATACTATCTGCTTTCGTAGAGACTGAAGATGTTCAAGTTCGTGAGATGGCTAAAACAGAGCTTCAGGTGTTGGTGAATGAAGGTACTCTGAAGATCTCAGCAACCAAGAAACCTGAATGA
Protein Sequence
- >AT3G16810.1
MSSKGLKPQKSTKRKDTDSSAKFDSLKSKKPKLVSGEQQQHVKPKFGKPKSAGDKEQSTNLSKKERRVQAKELTEARKKKRKPHYNLEQELVSLWEKMRRRNIGKEDRSKLISEAIRKMKGKVPEIAVSHVSSRVLQTCVKFCSQAEKDVLFTELQPQFLNLASNKYAVHFIQKMLDGASKQQLAACISSLRGHVAPLLRHVFGSLVVEHAYHLGSAAQKQELLAELYSTELQLFKGLTTSNEKTVVDIIAKLGLQKGAVNRHMTAIIQPILEKGIVDHTITHKLLIEYLTIADKTSAADVLQLLTGSLLLRMVHTRDGSRLAMLSIKHGSAKERKKIIKAMKEHVKKMAFDQFGSMVLACIFSIVDDTKLVTKIIVRELEATLKDLVMDKNGRRPLLQLLHPNSSRYLSHDDLAALDLSVPSLCSMDKSETSSKTKDTDGNEIGEETKDEQEDTVAEHSDHEENVTAMGGKKDPLVRRQELLVNSGLAERLIDVCVENAEEFLQSKFGNEVMYEVAIGGSDGILCPSLSEKLCELYEAISSVAAEPKPQESEKDSEHILENFHSSRTIRRLVLNRPGFASILFKKALSGKCRSWAQGHCSKILSAFVETEDVQVREMAKTELQVLVNEGTLKISATKKPE