Information report for AT3G16650
Gene Details
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Functional Descriptions
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- GO:0000398 — involved in — mRNA splicing, via spliceosome
- GO:0080008 — part of — Cul4-RING E3 ubiquitin ligase complex
- GO:0071013 — part of — catalytic step 2 spliceosome
- GO:0005515 — enables — protein binding
- GO:0005634 — located in — nucleus
- GO:0000974 — part of — Prp19 complex
Functional Keywords
Literature and News
- Genes that are uniquely stress regulated in salt overly sensitive (sos) mutants. DOI: 10.1104/pp.126.1.363 ; PMID: 11351099
- Rapid identification of Arabidopsis insertion mutants by non-radioactive detection of T-DNA tagged genes. DOI: 10.1046/j.1365-313x.2002.01416.x ; PMID: 12383089
- Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases. DOI: 10.1105/tpc.107.055418 ; PMID: 18223036
- Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes. DOI: 10.1105/tpc.108.058891 ; PMID: 18552200
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- The Arabidopsis MOS4-Associated Complex Promotes MicroRNA Biogenesis and Precursor Messenger RNA Splicing. DOI: 10.1105/tpc.17.00370 ; PMID: 28947490
- Genes that are uniquely stress regulated in salt overly sensitive (sos) mutants. DOI: 10.1104/pp.126.1.363 ; PMID: 11351099
- Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases. DOI: 10.1105/tpc.107.055418 ; PMID: 18223036
- Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes. DOI: 10.1105/tpc.108.058891 ; PMID: 18552200
Gene Resources
- UniProt: A0A5S9XCR8
- EMBL: CACRSJ010000106, CACSHJ010000089, LR881468
- AlphaFoldDB: A0A5S9XCR8
- EnsemblPlants: AT3G16650.1
- Gramene: AT3G16650.1
- KEGG: ath:AT3G16650
- Orthologous matrix: ERMPSRW
- ExpressionAtlas: AT3G16650
- InterPro: IPR001680, IPR015943, IPR019775
- PANTHER: PTHR19923, PTHR19923:SF0
- SUPFAM: SSF50978
- PROSITE: PS00678, PS50082, PS50294
- Gene3D: 2.130.10.10
- OrthoDB: A0A5S9XCR8
- SWISS-MODEL: A0A5S9XCR8
- Conserved Domain Database: cd00200
Homologs
- Actinidia chinensis CEY00_Acc05934, CEY00_Acc30903
- Juglans regia Jr11_05460
- Lactuca sativa gene-LSAT_2X81981
- Musa acuminata Ma02_g10470, Ma04_g10720
- Nicotiana attenuata A4A49_08451
- Solanum lycopersicum Solyc02g091790.3
Sequences
cDNA Sequence
- >AT3G16650.1
GGATTCGAGTGTTGGGCTACGTATAAATAGTGTTCGGGTCGGATAAAATCCTATTTCCCTCTCTTCTCTTCCGTCTTTCTCGTTCTGTTTCTGATTGTTCGTGTAAAACCCTAGAATGACGATGATAGCTTTGAACAGGGAGGTCGAAACTCAGTCACTGAAAAAACTCAGTCTAAAATCTGTTAGACGAGCTCGTGAAATTTTCTCCCCCGTCCATGGCCAATTTCCTCAGCCTGATCCTGAAAGCAAAAGAATTCGGCTCTGCCATAAGATTCAAGTTGCATTTGGAGGCGTAGAACCTGCAAGTAAGCCTACACGTATTGCTGACCATAACAGTGAAAAGACGGCTCCATTGAAAGCCCTTGCGCTTCCAGGTCCAAAAGGGTCCAAGGAACTTCGAAAAAGCGCAACAGAGAAAGCTTTAGTTGTTGGTCCAACTTTACCGCCAAGAGACTTGAACAATACTGGTAATCCAGGCAAAAGCACGGCCATTCTTCCTGCACCTGGATCATTTTCCGAAAGAAATCTGTCAACTGCTGCTTTAATGGAGAGAATGCCTAGTAGATGGCCCCGTCCAGAGTGGCATGCACCATGGAAGAATTACAGGGTGCTCCAGGGACACTTGGGTTGGGTCAGATCTGTTGCGTTTGACCCAAGCAATGAATGGTTTTGCACTGGTTCAGCTGATCGTACCATCAAGATATGGGATGTAGCGACTGGAGTTCTGAAACTCACACTTACTGGACATATAGGGCAAGTACGAGGCCTCGCTGTAAGCAATAGACATACCTATATGTTTTCTGCTGGTGATGACAAGCAAGTCAAATGCTGGGACCTTGAGCAGAATAAGGTTATTCGATCTTATCATGGTCATTTGCATGGCGTTTACTGTTTAGCTCTTCATCCTACTCTTGATGTTGTACTAACCGGAGGGCGAGACTCTGTCTGCAGGGTATGGGATATCCGTACGAAGATGCAAATTTTTGTACTCCCACATGACAGCGATGTTTTTTCCGTTTTGGCCCGCCCAACTGATCCACAAGTTATTACAGGGTCTCATGACTCAACCATCAAATTTTGGGACCTCCGATATGGCAAATCGATGGCAACCATAACGAATCATAAGAAGACTGTCCGAGCAATGGCTCTCCATCCGAAAGAGAATGATTTTGTTTCTGCATCAGCTGACAACATCAAGAAGTTTAGCCTTCCTAAGGGAGAGTTTTGCCACAACATGCTTTCTCTACAGAGAGACATAATTAACGCAGTGGCTGTGAATGAGGATGGCGTAATGGTCACTGGAGGTGATAAAGGTGGCTTATGGTTCTGGGACTGGAAGAGTGGTCACAATTTCCAACGGGCAGAAACTATTGTACAGCCTGGTTCGCTGGAGAGTGAAGCAGGTATATATGCAGCGTGTTACGATCAGACGGGTTCAAGGCTGGTAACGTGTGAGGGAGACAAAACAATAAAGATGTGGAAGGAAGACGAGGATGCAACTCCTGAAACTCATCCTCTCAACTTCAAACCTCCCAAAGAGATCAGACGCTTCTGAGGTTTCCCTCTCTTACAAGTTACACCTCTCTAATATCAAACTCGAAGCCAGAAAAAAAAAATCACTAATCTCACTCTGGATTAAAAAAAACCTTGGTTATGCTATATAATTTCTTCTTCAAGATAGATATGGAAAAAAACAGCATTGTAGTTTCTTATTAATTATTGTAGTTTTACATGAAAAAAGACACTATTTTCGGAAGGGTTTTGGACAAGGGCATTTCGGGTTGATTCAGAAAGTGATTGTAGCCGAGTTAAAGCATGACATGAACCCAACAATGGCAAAACATCTTTGTACTGTGTTCGTGGTGTTTGTCAAAAGATTATTGAGCA
CDS Sequence
- >AT3G16650.1
ATGACGATGATAGCTTTGAACAGGGAGGTCGAAACTCAGTCACTGAAAAAACTCAGTCTAAAATCTGTTAGACGAGCTCGTGAAATTTTCTCCCCCGTCCATGGCCAATTTCCTCAGCCTGATCCTGAAAGCAAAAGAATTCGGCTCTGCCATAAGATTCAAGTTGCATTTGGAGGCGTAGAACCTGCAAGTAAGCCTACACGTATTGCTGACCATAACAGTGAAAAGACGGCTCCATTGAAAGCCCTTGCGCTTCCAGGTCCAAAAGGGTCCAAGGAACTTCGAAAAAGCGCAACAGAGAAAGCTTTAGTTGTTGGTCCAACTTTACCGCCAAGAGACTTGAACAATACTGGTAATCCAGGCAAAAGCACGGCCATTCTTCCTGCACCTGGATCATTTTCCGAAAGAAATCTGTCAACTGCTGCTTTAATGGAGAGAATGCCTAGTAGATGGCCCCGTCCAGAGTGGCATGCACCATGGAAGAATTACAGGGTGCTCCAGGGACACTTGGGTTGGGTCAGATCTGTTGCGTTTGACCCAAGCAATGAATGGTTTTGCACTGGTTCAGCTGATCGTACCATCAAGATATGGGATGTAGCGACTGGAGTTCTGAAACTCACACTTACTGGACATATAGGGCAAGTACGAGGCCTCGCTGTAAGCAATAGACATACCTATATGTTTTCTGCTGGTGATGACAAGCAAGTCAAATGCTGGGACCTTGAGCAGAATAAGGTTATTCGATCTTATCATGGTCATTTGCATGGCGTTTACTGTTTAGCTCTTCATCCTACTCTTGATGTTGTACTAACCGGAGGGCGAGACTCTGTCTGCAGGGTATGGGATATCCGTACGAAGATGCAAATTTTTGTACTCCCACATGACAGCGATGTTTTTTCCGTTTTGGCCCGCCCAACTGATCCACAAGTTATTACAGGGTCTCATGACTCAACCATCAAATTTTGGGACCTCCGATATGGCAAATCGATGGCAACCATAACGAATCATAAGAAGACTGTCCGAGCAATGGCTCTCCATCCGAAAGAGAATGATTTTGTTTCTGCATCAGCTGACAACATCAAGAAGTTTAGCCTTCCTAAGGGAGAGTTTTGCCACAACATGCTTTCTCTACAGAGAGACATAATTAACGCAGTGGCTGTGAATGAGGATGGCGTAATGGTCACTGGAGGTGATAAAGGTGGCTTATGGTTCTGGGACTGGAAGAGTGGTCACAATTTCCAACGGGCAGAAACTATTGTACAGCCTGGTTCGCTGGAGAGTGAAGCAGGTATATATGCAGCGTGTTACGATCAGACGGGTTCAAGGCTGGTAACGTGTGAGGGAGACAAAACAATAAAGATGTGGAAGGAAGACGAGGATGCAACTCCTGAAACTCATCCTCTCAACTTCAAACCTCCCAAAGAGATCAGACGCTTCTGA
Protein Sequence
- >AT3G16650.1
MTMIALNREVETQSLKKLSLKSVRRAREIFSPVHGQFPQPDPESKRIRLCHKIQVAFGGVEPASKPTRIADHNSEKTAPLKALALPGPKGSKELRKSATEKALVVGPTLPPRDLNNTGNPGKSTAILPAPGSFSERNLSTAALMERMPSRWPRPEWHAPWKNYRVLQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIGQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLHGVYCLALHPTLDVVLTGGRDSVCRVWDIRTKMQIFVLPHDSDVFSVLARPTDPQVITGSHDSTIKFWDLRYGKSMATITNHKKTVRAMALHPKENDFVSASADNIKKFSLPKGEFCHNMLSLQRDIINAVAVNEDGVMVTGGDKGGLWFWDWKSGHNFQRAETIVQPGSLESEAGIYAACYDQTGSRLVTCEGDKTIKMWKEDEDATPETHPLNFKPPKEIRRF