Information report for AT3G16600
Gene Details
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Functional Descriptions
- GO:0006281 — involved in — DNA repair
- GO:0005634 — located in — nucleus
- GO:0008094 — enables — ATP-dependent activity, acting on DNA
- GO:0005634 — is active in — nucleus
Functional Keywords
Literature and News
- Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome. DOI: 10.1186/gb-2002-3-4-research0016 ; PMID: 11983057
- Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis. DOI: 10.1104/pp.104.052423 ; PMID: 15644464
- A transcriptome-based characterization of habituation in plant tissue culture. DOI: 10.1104/pp.105.076059 ; PMID: 16489130
- SNF2 chromatin remodeler-family proteins FRG1 and -2 are required for RNA-directed DNA methylation. DOI: 10.1073/pnas.1420515111 ; PMID: 25425661
- Repertoire of plant RING E3 ubiquitin ligases revisited: New groups counting gene families and single genes. DOI: 10.1371/journal.pone.0203442 ; PMID: 30169501
Gene Resources
- UniProt: F4J2R0
- EMBL: CP002686
- AlphaFoldDB: F4J2R0
- EnsemblPlants: AT3G16600.1
- Gramene: AT3G16600.1
- KEGG: ath:AT3G16600
- Orthologous matrix: NEVPQNP
- ExpressionAtlas: AT3G16600
- InterPro: IPR000330, IPR001650, IPR001841
- PANTHER: PTHR45626, PTHR45626:SF24
- SUPFAM: SSF52540, SSF57850
- PROSITE: PS00518, PS50089, PS51192
- Gene3D: 3.30.40.10, 3.40.50.10810, 3.40.50.300
- SWISS-MODEL: F4J2R0
- Conserved Domain Database: cd18008, cd18793
Homologs
- Actinidia chinensis CEY00_Acc33717
- Brachypodium distachyon BRADI_1g57635v3
- Juglans regia Jr04_19580
- Manihot esculenta MANES_15G110200
- Musa acuminata Ma03_g27690
- Oryza sativa ALT1, BRHIS1
- Populus trichocarpa POPTR_001G207700v3, POPTR_003G022100v3
- Rosa chinensis RchiOBHm_Chr5g0025621
- Sesamum indicum SIN_1006259
- Solanum lycopersicum Solyc02g062780.3
Sequences
cDNA Sequence
- >AT3G16600.1
ATGGATGATACAATGGACATGAGTTCAGGTAGTGATGAAGAAGTACAAGAAGAGAAGACCACTGTTAACGAGAGGGTCATCTATCAGGCTGCATTACAAGATCTGAAGCAACCCAAGACCGAAAAGGATCTACCTCCTGGTGTTCTTACAGTTCCTCTTATGAGGCATCAGAAAATTGCATTGAACTGGATGCGTAAGAAAGAAAAAAGAAGCAGGCACTGTTTGGGAGGGATATTAGCAGATGATCAGGGACTTGGTAAAACGATCTCGACGATCTCTCTTATCCTGTTACAAAAGTTGAAGTCACAATCAAAGCAGAGAAAGCGAAAAGGTCAAAACTCTGGTGGTACATTGATTGTTTGTCCAGCAAGTGTTGTAAAACAATGGGCAAGAGAAGTTAAAGAGAAGGTTTCTGATGAACACAAACTCTCTGTTTTAGTCCACCATGGATCTCACAGAACCAAAGATCCAACAGAAATAGCAATATATGATGTGGTCATGACAACTTACGCCATTGTTACAAATGAAGTTCCACAAAACCCTATGCTGAATCGTTATGATAGTATGAGAGGCAGAGAAAGCCTTGACGGATCGAGTTTGATTCAGCCTCACGTTGGTGCACTAGGAAGAGTTAGGTGGTTGAGAGTAGTATTAGATGAAGCTCATACAATTAAAAACCATAGAACCCTAATTGCAAAAGCTTGTTTTAGCCTTAGAGCCAAAAGGAGATGGTGTTTGACTGGAACGCCGATAAAGAACAAAGTAGACGATCTTTATAGCTATTTCAGATTTCTTAGATATCATCCATATGCCATGTGCAATTCATTTCACCAAAGAATCAAAGCTCCAATTGATAAAAAGCCTCTTCATGGTTACAAGAAGCTTCAAGCTATTCTAAGGGGTATAATGTTGCGCCGCACCAAAGAATGGTCTTTCTACAGGAAGCTTGAATTGAATTCACGTTGGAAGTTTGAGGAATATGCTGCTGATGGGACTTTGCATGAACACATGGCTTATCTTTTGGTGATGCTTTTGCGACTACGCCAAGCTTGTAACCATCCACAACTTGTTAACGGATATAGTCACTCAGATACTACAAGAAAAATGTCAGATGGAGTTCGAGTAGCCCCTAGAGAGAATCTAATCATGTTCCTCGATCTCTTGAAATTATCCTCAACCACCTGCTCTGTTTGTAGTGATCCACCAAAAGACCCTGTTGTTACTTTGTGTGGCCATGTGTTTTGTTATGAGTGTGTGTCTGTAAACATTAACGGGGATAACAATACGTGCCCTGCACTTAATTGCCACAGCCAGCTTAAACATGATGTTGTTTTCACTGAATCTGCAGTTAGAAGTTGCATCAACGATTATGATGATCCTGAAGATAAAAATGCTTTAGTTGCATCAAGGCGAGTTTATTTCATCGAAAATCCGAGCTGTGATAGAGATTCTTCAGTCGCTTGCAGAGCAAGGCAGTCCAGACACTCCACCAATAAAGACAATAGTATCAGTGGACTGGTATGTGCGATGTTGATGTCTCTTAAAGCTGGAAACCTTGGATTGAATATGGTAGCTGCAAGTCATGTCATTCTACTGGACCTATGGTGGAATCCAACAACAGAGGATCAAGCTATTGATCGAGCTCATCGTATCGGACAAACTCGAGCTGTTACGGTCACTCGTATTGCCATCAAAAATACCGTTGAGGAACGAATTTTGACTCTTCATGAACGTAAAAGGAACATTGTTGCATCTGCATTGGGTGAAAAAAACTGGCAAAAGTTCTGCGATTCAACTAACACTAGAAGATCTCGAATATCTGTTTTTTGGTGTGTAGAATATCCCAGAGTTTTTATTGATAAGAGGAATAAAACCTTTAGCTATTTAATAAGTCACAAGTGTGAATGTAATGAATAA
CDS Sequence
- >AT3G16600.1
ATGGATGATACAATGGACATGAGTTCAGGTAGTGATGAAGAAGTACAAGAAGAGAAGACCACTGTTAACGAGAGGGTCATCTATCAGGCTGCATTACAAGATCTGAAGCAACCCAAGACCGAAAAGGATCTACCTCCTGGTGTTCTTACAGTTCCTCTTATGAGGCATCAGAAAATTGCATTGAACTGGATGCGTAAGAAAGAAAAAAGAAGCAGGCACTGTTTGGGAGGGATATTAGCAGATGATCAGGGACTTGGTAAAACGATCTCGACGATCTCTCTTATCCTGTTACAAAAGTTGAAGTCACAATCAAAGCAGAGAAAGCGAAAAGGTCAAAACTCTGGTGGTACATTGATTGTTTGTCCAGCAAGTGTTGTAAAACAATGGGCAAGAGAAGTTAAAGAGAAGGTTTCTGATGAACACAAACTCTCTGTTTTAGTCCACCATGGATCTCACAGAACCAAAGATCCAACAGAAATAGCAATATATGATGTGGTCATGACAACTTACGCCATTGTTACAAATGAAGTTCCACAAAACCCTATGCTGAATCGTTATGATAGTATGAGAGGCAGAGAAAGCCTTGACGGATCGAGTTTGATTCAGCCTCACGTTGGTGCACTAGGAAGAGTTAGGTGGTTGAGAGTAGTATTAGATGAAGCTCATACAATTAAAAACCATAGAACCCTAATTGCAAAAGCTTGTTTTAGCCTTAGAGCCAAAAGGAGATGGTGTTTGACTGGAACGCCGATAAAGAACAAAGTAGACGATCTTTATAGCTATTTCAGATTTCTTAGATATCATCCATATGCCATGTGCAATTCATTTCACCAAAGAATCAAAGCTCCAATTGATAAAAAGCCTCTTCATGGTTACAAGAAGCTTCAAGCTATTCTAAGGGGTATAATGTTGCGCCGCACCAAAGAATGGTCTTTCTACAGGAAGCTTGAATTGAATTCACGTTGGAAGTTTGAGGAATATGCTGCTGATGGGACTTTGCATGAACACATGGCTTATCTTTTGGTGATGCTTTTGCGACTACGCCAAGCTTGTAACCATCCACAACTTGTTAACGGATATAGTCACTCAGATACTACAAGAAAAATGTCAGATGGAGTTCGAGTAGCCCCTAGAGAGAATCTAATCATGTTCCTCGATCTCTTGAAATTATCCTCAACCACCTGCTCTGTTTGTAGTGATCCACCAAAAGACCCTGTTGTTACTTTGTGTGGCCATGTGTTTTGTTATGAGTGTGTGTCTGTAAACATTAACGGGGATAACAATACGTGCCCTGCACTTAATTGCCACAGCCAGCTTAAACATGATGTTGTTTTCACTGAATCTGCAGTTAGAAGTTGCATCAACGATTATGATGATCCTGAAGATAAAAATGCTTTAGTTGCATCAAGGCGAGTTTATTTCATCGAAAATCCGAGCTGTGATAGAGATTCTTCAGTCGCTTGCAGAGCAAGGCAGTCCAGACACTCCACCAATAAAGACAATAGTATCAGTGGACTGGTATGTGCGATGTTGATGTCTCTTAAAGCTGGAAACCTTGGATTGAATATGGTAGCTGCAAGTCATGTCATTCTACTGGACCTATGGTGGAATCCAACAACAGAGGATCAAGCTATTGATCGAGCTCATCGTATCGGACAAACTCGAGCTGTTACGGTCACTCGTATTGCCATCAAAAATACCGTTGAGGAACGAATTTTGACTCTTCATGAACGTAAAAGGAACATTGTTGCATCTGCATTGGGTGAAAAAAACTGGCAAAAGTTCTGCGATTCAACTAACACTAGAAGATCTCGAATATCTGTTTTTTGGTGTGTAGAATATCCCAGAGTTTTTATTGATAAGAGGAATAAAACCTTTAGCTATTTAATAAGTCACAAGTGTGAATGTAATGAATAA
Protein Sequence
- >AT3G16600.1
MDDTMDMSSGSDEEVQEEKTTVNERVIYQAALQDLKQPKTEKDLPPGVLTVPLMRHQKIALNWMRKKEKRSRHCLGGILADDQGLGKTISTISLILLQKLKSQSKQRKRKGQNSGGTLIVCPASVVKQWAREVKEKVSDEHKLSVLVHHGSHRTKDPTEIAIYDVVMTTYAIVTNEVPQNPMLNRYDSMRGRESLDGSSLIQPHVGALGRVRWLRVVLDEAHTIKNHRTLIAKACFSLRAKRRWCLTGTPIKNKVDDLYSYFRFLRYHPYAMCNSFHQRIKAPIDKKPLHGYKKLQAILRGIMLRRTKEWSFYRKLELNSRWKFEEYAADGTLHEHMAYLLVMLLRLRQACNHPQLVNGYSHSDTTRKMSDGVRVAPRENLIMFLDLLKLSSTTCSVCSDPPKDPVVTLCGHVFCYECVSVNINGDNNTCPALNCHSQLKHDVVFTESAVRSCINDYDDPEDKNALVASRRVYFIENPSCDRDSSVACRARQSRHSTNKDNSISGLVCAMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAIDRAHRIGQTRAVTVTRIAIKNTVEERILTLHERKRNIVASALGEKNWQKFCDSTNTRRSRISVFWCVEYPRVFIDKRNKTFSYLISHKCECNE