Information report for AT3G16380
Gene Details
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Functional Descriptions
- PO:0000003 — whole plant — planta entera (Spanish, exact), 植物体全体 (Japanese, exact), clonal colony (related), colony (related), bush (narrow), frutex (narrow), frutices (narrow), gametophyte (narrow), herb (narrow), liana (narrow), prothalli (narrow), prothallium (narrow), prothallus (narrow), seedling (narrow), shrub (narrow), sporophyte (narrow), suffrutex (narrow), suffrutices (narrow), tree (narrow), vine (narrow), woody clump (narrow), genet (broad), ramet (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- GO:0005829 — is active in — cytosol
- GO:0003743 — enables — translation initiation factor activity
- GO:0006413 — acts upstream of or within — translational initiation
- GO:0005634 — is active in — nucleus
- GO:1990904 — part of — ribonucleoprotein complex
- GO:0008143 — enables — poly(A) binding
- GO:0016071 — acts upstream of or within — mRNA metabolic process
Functional Keywords
Literature and News
- Unexpected complexity of poly(A)-binding protein gene families in flowering plants: three conserved lineages that are at least 200 million years old and and cross-regulation. DOI: 10.1093/genetics/163.1.311 ; PMID: 12586718
- Comparative analysis of the Arabidopsis pollen transcriptome. DOI: 10.1104/pp.103.020925 ; PMID: 12805594
- Expression profiling of cytokinin action in Arabidopsis. DOI: 10.1104/pp.103.021436 ; PMID: 12913156
- Transcriptional profiling of Arabidopsis tissues reveals the unique characteristics of the pollen transcriptome. DOI: 10.1104/pp.103.028241 ; PMID: 14500793
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Arabidopsis translation initiation factors eIFiso4G1/2 link repression of mRNA cap-binding complex eIFiso4F assembly with RNA-binding protein SOAR1-mediated ABA signaling. DOI: 10.1111/nph.15880 ; PMID: 31050354
Gene Resources
- UniProt: A0A7G2EL81
- EMBL: LR881468
- AlphaFoldDB: A0A7G2EL81
- EnsemblPlants: AT3G16380.1
- Gramene: AT3G16380.1
- KEGG: ath:AT3G16380
- Orthologous matrix: CQGVKLY
- ExpressionAtlas: AT3G16380
- InterPro: IPR000504, IPR012677, IPR035979
- PANTHER: PTHR48025, PTHR48025:SF1
- SUPFAM: SSF54928
- PROSITE: PS50102
- Gene3D: 3.30.70.330
- SWISS-MODEL: A0A7G2EL81
Homologs
- Beta vulgaris BVRB_9g205140
- Brassica napus GSBRNA2T00136766001
- Brassica oleracea Bo4g023970
- Oryza sativa OsCRP1, RNP29, RBP-L
- Saccharum spontaneum Sspon.08G0005280-2B
Sequences
cDNA Sequence
- >AT3G16380.1
CTCTGCTTTCTCTCGTCTTCTCCATTTACTCTTTTTTCTCTGCAGAGTTTTTCGGAAAAAGAAATTGTTCTTTCTCATTGATTCTACATTTCTACAGAACGAGAGAGAGATAAGGATTTGTGAGAGAACAACAATGGCGCTCGTGAAAACGGAAACGCAGGCGTTAGGAAACCACCAGCATTCTTCAAGGTTTGGTTCGCTTTACGTCGGTGATCTTAGCCCAGACGTGACGGAGAAAGATCTCATTGATAAGTTCTCTTTGAATGTTCCGGTAGTGTCCGTTCATCTTTGCCGTAACTCTGTCACCGGAAAATCCATGTGTTACGCTTACATCAACTTCGATTCACCTTTCAGCGCATCGAATGCTATGACTCGCTTAAACCATAGTGATTTGAAGGGAAAGGCTATGCGAATAATGTGGTCTCAGAGGGATCTTGCGTACCGTCGTCGTACTCGTACTGGTTTTGCAAATCTATACGTAAAGAATCTGGATAGCTCGATTACTAGCAGTTGCTTAGAGCGAATGTTTTGCCCCTTTGGTTCCATACTTTCTTGCAAAGTCGTTGAAGAGAATGGCCAAAGTAAAGGTTTTGGCTTTGTTCAGTTTGATACAGAGCAATCTGCTGTATCTGCTCGTTCTGCTCTCCACGGCTCTATGGTTTATGGCAAGAAACTGTTTGTTGCCAAGTTCATCAACAAGGATGAAAGAGCAGCTATGGCAGGAAATCAAGACTCTACAAACGTTTATGTGAAGAATCTGATCGAAACTGTTACAGATGATTGTCTACATACACTGTTTTCTCAATATGGAACTGTCTCTAGTGTTGTGGTTATGAGGGATGGTATGGGAAGATCTAGAGGTTTCGGATTTGTTAACTTCTGCAATCCAGAAAATGCTAAGAAAGCTATGGAATCTCTCTGTGGACTACAACTTGGATCGAAGAAATTGTTTGTTGGTAAGGCACTCAAGAAAGATGAAAGGAGGGAGATGCTGAAACAGAAATTCAGTGACAACTTTATTGCAAAGCCTAACATGAGATGGTCCAATCTGTACGTGAAGAACTTGAGTGAATCAATGAATGAAACAAGACTGCGAGAAATCTTTGGATGCTATGGGCAAATAGTTTCAGCTAAAGTGATGTGTCATGAGAATGGCAGAAGTAAAGGATTCGGCTTTGTGTGCTTCTCTAACTGTGAAGAGTCCAAACAGGCTAAAAGATATCTCAATGGGTTCTTAGTTGATGGAAAGCCAATAGTTGTTCGAGTTGCAGAGCGCAAAGAGGATCGAATCAAGAGGTTGCAGCAATATTTTCAGGCACAGCCACGCCAGTACACGCAAGCTCCTTCTGCCCCTTCACCAGCTCAGCCAGTCCTCTCATATGTGTCCAGCTCATATGGTTGCTTTCAGCCATTCCAGGTCGGGACATCTTATTACTATATGGGCAATCAGGTGCCACAAATGTCCGGTCACCAAAACATCACCACCTACGTTCCAGCTGGGAAAGTGCCTCTCAAGGAGAGAAGATCAATGCATCTGGTCTACAAACATCCGGCTTATCCCGTTGCCAAGAGGGGTGCTAAACAGACACTGGTTTTTAAGGGTGAGGTTAACAGAAATTTAGAGGCTGCAACATGCTCCAAAGCAACAACATCTGAGGAGAACCGTAAAGAAGAACGAAGATTGACTTTGTCAGGAAAGTTGTCACCAGAAGTGAAGGTAGAGGAATCAGGAAAACAATTGCAATGATTGAAGCTTCTTAAACTTTGGCCCTGCTGCTCTGGCTGGAGATTTCTCACTGCTTAGAATTCTACGCTGTTCATTTTAACACTTCATTAGGTTTTCCTCATAGCAATGGTATATGTAGATCTTTTGATCACACAGGGAGATGGTTGTATATAGTTTCTGGTACTAAGTGTTCTCAACTCTTGGTTTAGTACTTGTAATAAGTTTCAATACATTTTTAGTAAAACAGTGATG
CDS Sequence
- >AT3G16380.1
ATGGCGCTCGTGAAAACGGAAACGCAGGCGTTAGGAAACCACCAGCATTCTTCAAGGTTTGGTTCGCTTTACGTCGGTGATCTTAGCCCAGACGTGACGGAGAAAGATCTCATTGATAAGTTCTCTTTGAATGTTCCGGTAGTGTCCGTTCATCTTTGCCGTAACTCTGTCACCGGAAAATCCATGTGTTACGCTTACATCAACTTCGATTCACCTTTCAGCGCATCGAATGCTATGACTCGCTTAAACCATAGTGATTTGAAGGGAAAGGCTATGCGAATAATGTGGTCTCAGAGGGATCTTGCGTACCGTCGTCGTACTCGTACTGGTTTTGCAAATCTATACGTAAAGAATCTGGATAGCTCGATTACTAGCAGTTGCTTAGAGCGAATGTTTTGCCCCTTTGGTTCCATACTTTCTTGCAAAGTCGTTGAAGAGAATGGCCAAAGTAAAGGTTTTGGCTTTGTTCAGTTTGATACAGAGCAATCTGCTGTATCTGCTCGTTCTGCTCTCCACGGCTCTATGGTTTATGGCAAGAAACTGTTTGTTGCCAAGTTCATCAACAAGGATGAAAGAGCAGCTATGGCAGGAAATCAAGACTCTACAAACGTTTATGTGAAGAATCTGATCGAAACTGTTACAGATGATTGTCTACATACACTGTTTTCTCAATATGGAACTGTCTCTAGTGTTGTGGTTATGAGGGATGGTATGGGAAGATCTAGAGGTTTCGGATTTGTTAACTTCTGCAATCCAGAAAATGCTAAGAAAGCTATGGAATCTCTCTGTGGACTACAACTTGGATCGAAGAAATTGTTTGTTGGTAAGGCACTCAAGAAAGATGAAAGGAGGGAGATGCTGAAACAGAAATTCAGTGACAACTTTATTGCAAAGCCTAACATGAGATGGTCCAATCTGTACGTGAAGAACTTGAGTGAATCAATGAATGAAACAAGACTGCGAGAAATCTTTGGATGCTATGGGCAAATAGTTTCAGCTAAAGTGATGTGTCATGAGAATGGCAGAAGTAAAGGATTCGGCTTTGTGTGCTTCTCTAACTGTGAAGAGTCCAAACAGGCTAAAAGATATCTCAATGGGTTCTTAGTTGATGGAAAGCCAATAGTTGTTCGAGTTGCAGAGCGCAAAGAGGATCGAATCAAGAGGTTGCAGCAATATTTTCAGGCACAGCCACGCCAGTACACGCAAGCTCCTTCTGCCCCTTCACCAGCTCAGCCAGTCCTCTCATATGTGTCCAGCTCATATGGTTGCTTTCAGCCATTCCAGGTCGGGACATCTTATTACTATATGGGCAATCAGGTGCCACAAATGTCCGGTCACCAAAACATCACCACCTACGTTCCAGCTGGGAAAGTGCCTCTCAAGGAGAGAAGATCAATGCATCTGGTCTACAAACATCCGGCTTATCCCGTTGCCAAGAGGGGTGCTAAACAGACACTGGTTTTTAAGGGTGAGGTTAACAGAAATTTAGAGGCTGCAACATGCTCCAAAGCAACAACATCTGAGGAGAACCGTAAAGAAGAACGAAGATTGACTTTGTCAGGAAAGTTGTCACCAGAAGTGAAGGTAGAGGAATCAGGAAAACAATTGCAATGA
Protein Sequence
- >AT3G16380.1
MALVKTETQALGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKRLQQYFQAQPRQYTQAPSAPSPAQPVLSYVSSSYGCFQPFQVGTSYYYMGNQVPQMSGHQNITTYVPAGKVPLKERRSMHLVYKHPAYPVAKRGAKQTLVFKGEVNRNLEAATCSKATTSEENRKEERRLTLSGKLSPEVKVEESGKQLQ