Information report for AT3G16090
Gene Details
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Functional Descriptions
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- GO:1904276 — acts upstream of or within — regulation of wax biosynthetic process
- GO:0030433 — acts upstream of or within — ubiquitin-dependent ERAD pathway
- GO:0005515 — enables — protein binding
- hrd1a hrd1b — Endoplasmic reticulum (ER)-associated degradation process is blocked in hrd1a hrd1b double mutant.
- hrd1a hrd1b — Reduced stem cuticular wax accumulation. Increased leaf and stem cutin monomers.
Functional Keywords
Literature and News
- Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome. DOI: 10.1186/gb-2002-3-4-research0016 ; PMID: 11983057
- Conserved endoplasmic reticulum-associated degradation system to eliminate mutated receptor-like kinases in Arabidopsis. DOI: 10.1073/pnas.1013251108 ; PMID: 21187394
- EBS7 is a plant-specific component of a highly conserved endoplasmic reticulum-associated degradation system in Arabidopsis. DOI: 10.1073/pnas.1511724112 ; PMID: 26371323
- Defects in endoplasmic reticulum-associated degradation (ERAD) increase selenate sensitivity in Arabidopsis. DOI: 10.1080/15592324.2016.1171451 ; PMID: 27045899
- PAWH1 and PAWH2 are plant-specific components of an Arabidopsis endoplasmic reticulum-associated degradation complex. DOI: 10.1038/s41467-019-11480-7 ; PMID: 31375683
- Insight into the roles of the ER-associated degradation E3 ubiquitin ligase HRD1 in plant cuticular lipid biosynthesis. DOI: 10.1016/j.plaphy.2021.08.021 ; PMID: 34404006
- Repertoire of plant RING E3 ubiquitin ligases revisited: New groups counting gene families and single genes. DOI: 10.1371/journal.pone.0203442 ; PMID: 30169501
Gene Resources
- UniProt: A0A5S9XCT1
- EMBL: CACRSJ010000106, CACSHJ010000089
- AlphaFoldDB: A0A5S9XCT1
- EnsemblPlants: AT3G16090.1
- Gramene: AT3G16090.1
- KEGG: ath:AT3G16090
- Orthologous matrix: SDNLCII
- ExpressionAtlas: AT3G16090
- InterPro: IPR001841, IPR013083, IPR050731
- PANTHER: PTHR22763, PTHR22763:SF184
- SUPFAM: SSF57850
- PROSITE: PS50089
- Gene3D: 3.30.40.10
- OrthoDB: A0A5S9XCT1
- SWISS-MODEL: A0A5S9XCT1
- Conserved Domain Database: cd16479
Homologs
- Actinidia chinensis CEY00_Acc07397, CEY00_Acc10316
- Glycine max Glyma.10G051200
- Gossypium hirsutum Gohir.A12G072500
- Medicago truncatula Medtr1g066430
- Musa acuminata GSMUA_Achr7P25320_001
- Oryza sativa OsHrd1;MAL
- Solanum tuberosum PGSC0003DMG400030833
- Vitis vinifera VIT_07s0031g00390, VIT_07s0031g00380, VIT_07s0031g00400
Sequences
cDNA Sequence
- >AT3G16090.1
AAAAAATGTTGTCAAGGGTATAATTGGAACTTTCAAAATAGTCGGAGAACTAAAAGTTTGGTCTTAATCGGAAAAACATAGAAACACCGTTTCCTCCTCCGCTTCTTCGTCTTTCCGTCGTCCACTGTCTCTCTCTCTCTCTCGCGACGCAGATTTCGATTCGTCGAATATTTTAGCTAATCCTCTCTCTTAATCTCTTTGAACATTTTTCCCCAAATTCGCCGCAGTGAATACTTTCTCTTCCCGTAAATCTCCAAAAATCGAGTTTTTTTTATTACTTCTCAATTGAATTTGCTTCTTCCGATTGATCTCTTAATTGATTCGCTTGTGGGTTGGATTTGAATCCTCTCTTACTTTCCAAAGGTCATACCTTTTCACAGATCTATCTTTGAAATTGTGAAGAAGAAGAAGAAGAAGACGATGATTCGACTAAGAACATACGCAGGCCTTAGTTTTATGGCAACTTTGGCTGTAATTTATCATGCATTCAGCAGCAGAGGCCAATTTTACCCTGCGACTGTTTATCTATCAACCTCAAAGATCAGTTTGGTGTTGCTTCTCAATATGTGTTTGGTTCTTATGCTTAGTCTCTGGCATTTGGTCAAATTTGTCTTCTTGGGGTCTCTTAGGGAAGCAGAAGTCGAGAGGCTAAATGAACAAGCTTGGAGAGAACTTATGGAGATTCTCTTTGCCATTACTATCTTTAGACAAGACTTTTCTAGTGGGTTTCTTCCTTTGGTTGTTACTCTTCTGTTGATCAAGGCTTTACATTGGCTTGCTCAGAAAAGAGTTGAATACATTGAGACTACTCCTTCTGTCTCTAAGCTTTCTCATTTTCGTATTGTCTCTTTTATGGGTTTCCTTCTTCTTGTGGATAGTTTATTTATGTACAGTTCTATACGCCACTTGATTCAGTCGCGTCAGGCTTCGGTTTCTCTCTTCTTCTCATTCGAGTATATGATACTGGCGACAACGACTGTTGCTATTTTTGTGAAGTATGTTTTCTATGTCACTGATATGTTAATGGATGGTCAATGGGAGAAGAAGCCAGTTTATACTTTCTATCTTGAGCTTATCCGTGACCTGCTTCACTTGTCCATGTATATCTGCTTCTTCTTTGTCATATTCATGAACTATGGCGTGCCTTTGCATTTGTTACGGGAGCTCTACGAAACCTTCAGAAACTTCCAGATTCGTGTTTCCGATTACCTTCGTTATCGTAAGATCACGTCCAATATGAACGACAGGTTTCCTGATGCAACTCCTGAAGAACTTACTGCAAGTGATGCCACATGTATCATATGCCGTGAAGAGATGACAAATGCGAAGAAACTAATATGCGGGCATCTCTTTCATGTGCATTGTCTACGATCATGGTTGGAGAGACAGCAGACATGTCCTACTTGCAGAGCACTTGTTGTACCTCCTGAGAATGCCACCTCTGCAGCTCCAGGCCAACGTGAATTACACCAAGGTTCCCAACAGGGTACATCAAGCTCAGGTAACCAGGGCTCTGAAATAAGTTCTTCAGCTGGCGTTTCCAATAATAGTTTGAGCAGGCACCACGCCAGGCTTCAAGCAGCTGCTTCTGCAGCCTCCGTGTATGGGAAATCAATGGTTTACCCATCTGCAAACACAGTAGCATGGTCGTCGGGAGTTCCTGGAACAGAGCAAGTGTCAACTGAACCAGATCAAACTCTTCCTCAACACAACCTTCCTGTTGAAAACTCTCATGCCTATGCAAATATGTCGGAGACTAAGCTAGAAGAAATGAGAAAATCTCTGGAAACCCACCTCGAGATTTTGCGAAACCGACTTCACTTTCTGGAGACGAGGAAACCAGAATCCGCAGGGGAACCAGAGAACAAAGGAAAGTCGGTTGCTGATGCAGCAGAGTGAATACAGTGGAGAAAAAGAAAAACAGAACAAAAGGTAAGTAAGTGAAGCAGAGCAGATAGAGAAAGGAGAAAGAAGATTTGTGGTTCTTCTCAGAAAGACAAAAAAAACATGAATATCCCAAAAGTGTACATGTTTTATTATTATTGTTTATTCAGTGTCATAGAAATTAGAAGCTTGAGACTGAAACACAAACAGTTTTTTTTCTTACTTTAAAGTAATTGTTGGTTTGCATTTTAACGTGAGATTCTCTATATTAATATAACTCTTGAATGTTCCAATTTTTTAATATAATAAATCTTAATTACATAAGCC
CDS Sequence
- >AT3G16090.1
ATGATTCGACTAAGAACATACGCAGGCCTTAGTTTTATGGCAACTTTGGCTGTAATTTATCATGCATTCAGCAGCAGAGGCCAATTTTACCCTGCGACTGTTTATCTATCAACCTCAAAGATCAGTTTGGTGTTGCTTCTCAATATGTGTTTGGTTCTTATGCTTAGTCTCTGGCATTTGGTCAAATTTGTCTTCTTGGGGTCTCTTAGGGAAGCAGAAGTCGAGAGGCTAAATGAACAAGCTTGGAGAGAACTTATGGAGATTCTCTTTGCCATTACTATCTTTAGACAAGACTTTTCTAGTGGGTTTCTTCCTTTGGTTGTTACTCTTCTGTTGATCAAGGCTTTACATTGGCTTGCTCAGAAAAGAGTTGAATACATTGAGACTACTCCTTCTGTCTCTAAGCTTTCTCATTTTCGTATTGTCTCTTTTATGGGTTTCCTTCTTCTTGTGGATAGTTTATTTATGTACAGTTCTATACGCCACTTGATTCAGTCGCGTCAGGCTTCGGTTTCTCTCTTCTTCTCATTCGAGTATATGATACTGGCGACAACGACTGTTGCTATTTTTGTGAAGTATGTTTTCTATGTCACTGATATGTTAATGGATGGTCAATGGGAGAAGAAGCCAGTTTATACTTTCTATCTTGAGCTTATCCGTGACCTGCTTCACTTGTCCATGTATATCTGCTTCTTCTTTGTCATATTCATGAACTATGGCGTGCCTTTGCATTTGTTACGGGAGCTCTACGAAACCTTCAGAAACTTCCAGATTCGTGTTTCCGATTACCTTCGTTATCGTAAGATCACGTCCAATATGAACGACAGGTTTCCTGATGCAACTCCTGAAGAACTTACTGCAAGTGATGCCACATGTATCATATGCCGTGAAGAGATGACAAATGCGAAGAAACTAATATGCGGGCATCTCTTTCATGTGCATTGTCTACGATCATGGTTGGAGAGACAGCAGACATGTCCTACTTGCAGAGCACTTGTTGTACCTCCTGAGAATGCCACCTCTGCAGCTCCAGGCCAACGTGAATTACACCAAGGTTCCCAACAGGGTACATCAAGCTCAGGTAACCAGGGCTCTGAAATAAGTTCTTCAGCTGGCGTTTCCAATAATAGTTTGAGCAGGCACCACGCCAGGCTTCAAGCAGCTGCTTCTGCAGCCTCCGTGTATGGGAAATCAATGGTTTACCCATCTGCAAACACAGTAGCATGGTCGTCGGGAGTTCCTGGAACAGAGCAAGTGTCAACTGAACCAGATCAAACTCTTCCTCAACACAACCTTCCTGTTGAAAACTCTCATGCCTATGCAAATATGTCGGAGACTAAGCTAGAAGAAATGAGAAAATCTCTGGAAACCCACCTCGAGATTTTGCGAAACCGACTTCACTTTCTGGAGACGAGGAAACCAGAATCCGCAGGGGAACCAGAGAACAAAGGAAAGTCGGTTGCTGATGCAGCAGAGTGA
Protein Sequence
- >AT3G16090.1
MIRLRTYAGLSFMATLAVIYHAFSSRGQFYPATVYLSTSKISLVLLLNMCLVLMLSLWHLVKFVFLGSLREAEVERLNEQAWRELMEILFAITIFRQDFSSGFLPLVVTLLLIKALHWLAQKRVEYIETTPSVSKLSHFRIVSFMGFLLLVDSLFMYSSIRHLIQSRQASVSLFFSFEYMILATTTVAIFVKYVFYVTDMLMDGQWEKKPVYTFYLELIRDLLHLSMYICFFFVIFMNYGVPLHLLRELYETFRNFQIRVSDYLRYRKITSNMNDRFPDATPEELTASDATCIICREEMTNAKKLICGHLFHVHCLRSWLERQQTCPTCRALVVPPENATSAAPGQRELHQGSQQGTSSSGNQGSEISSSAGVSNNSLSRHHARLQAAASAASVYGKSMVYPSANTVAWSSGVPGTEQVSTEPDQTLPQHNLPVENSHAYANMSETKLEEMRKSLETHLEILRNRLHFLETRKPESAGEPENKGKSVADAAE