Gene Details:
- Gene ID: AT3G16090
- Gene Symbol: AtHRD1A, HRD1A
- Gene Name: homolog of yeast Hrd1, homolog of yeast Hrd1
- Description: RING/U-box superfamily protein;(source:Araport11)
- TAIR Accession: locus:2093422
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
Gene Ontology:
- GO:1904276 — acts upstream of or within — regulation of wax biosynthetic process
- GO:0030433 — acts upstream of or within — ubiquitin-dependent ERAD pathway
- GO:0005515 — enables — protein binding
Germplasm Phenotype:
- hrd1a hrd1b — Endoplasmic reticulum (ER)-associated degradation process is blocked in hrd1a hrd1b double mutant.
- hrd1a hrd1b — Reduced stem cuticular wax accumulation. Increased leaf and stem cutin monomers.
Function-related keywords:
Literature:
- Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome. DOI: 10.1186/gb-2002-3-4-research0016 ; PMID: 11983057
- Conserved endoplasmic reticulum-associated degradation system to eliminate mutated receptor-like kinases in Arabidopsis. DOI: 10.1073/pnas.1013251108 ; PMID: 21187394
- EBS7 is a plant-specific component of a highly conserved endoplasmic reticulum-associated degradation system in Arabidopsis. DOI: 10.1073/pnas.1511724112 ; PMID: 26371323
- Defects in endoplasmic reticulum-associated degradation (ERAD) increase selenate sensitivity in Arabidopsis. DOI: 10.1080/15592324.2016.1171451 ; PMID: 27045899
- PAWH1 and PAWH2 are plant-specific components of an Arabidopsis endoplasmic reticulum-associated degradation complex. DOI: 10.1038/s41467-019-11480-7 ; PMID: 31375683
- Insight into the roles of the ER-associated degradation E3 ubiquitin ligase HRD1 in plant cuticular lipid biosynthesis. DOI: 10.1016/j.plaphy.2021.08.021 ; PMID: 34404006
- Repertoire of plant RING E3 ubiquitin ligases revisited: New groups counting gene families and single genes. DOI: 10.1371/journal.pone.0203442 ; PMID: 30169501
Sequences:
cDNA Sequence
- >AT3G16090.1
AAAAAATGTTGTCAAGGGTATAATTGGAACTTTCAAAATAGTCGGAGAACTAAAAGTTTGGTCTTAATCGGAAAAACATAGAAACACCGTTTCCTCCTCCGCTTCTTCGTCTTTCCGTCGTCCACTGTCTCTCTCTCTCTCTCGCGACGCAGATTTCGATTCGTCGAATATTTTAGCTAATCCTCTCTCTTAATCTCTTTGAACATTTTTCCCCAAATTCGCCGCAGTGAATACTTTCTCTTCCCGTAAATCTCCAAAAATCGAGTTTTTTTTATTACTTCTCAATTGAATTTGCTTCTTCCGATTGATCTCTTAATTGATTCGCTTGTGGGTTGGATTTGAATCCTCTCTTACTTTCCAAAGGTCATACCTTTTCACAGATCTATCTTTGAAATTGTGAAGAAGAAGAAGAAGAAGACGATGATTCGACTAAGAACATACGCAGGCCTTAGTTTTATGGCAACTTTGGCTGTAATTTATCATGCATTCAGCAGCAGAGGCCAATTTTACCCTGCGACTGTTTATCTATCAACCTCAAAGATCAGTTTGGTGTTGCTTCTCAATATGTGTTTGGTTCTTATGCTTAGTCTCTGGCATTTGGTCAAATTTGTCTTCTTGGGGTCTCTTAGGGAAGCAGAAGTCGAGAGGCTAAATGAACAAGCTTGGAGAGAACTTATGGAGATTCTCTTTGCCATTACTATCTTTAGACAAGACTTTTCTAGTGGGTTTCTTCCTTTGGTTGTTACTCTTCTGTTGATCAAGGCTTTACATTGGCTTGCTCAGAAAAGAGTTGAATACATTGAGACTACTCCTTCTGTCTCTAAGCTTTCTCATTTTCGTATTGTCTCTTTTATGGGTTTCCTTCTTCTTGTGGATAGTTTATTTATGTACAGTTCTATACGCCACTTGATTCAGTCGCGTCAGGCTTCGGTTTCTCTCTTCTTCTCATTCGAGTATATGATACTGGCGACAACGACTGTTGCTATTTTTGTGAAGTATGTTTTCTATGTCACTGATATGTTAATGGATGGTCAATGGGAGAAGAAGCCAGTTTATACTTTCTATCTTGAGCTTATCCGTGACCTGCTTCACTTGTCCATGTATATCTGCTTCTTCTTTGTCATATTCATGAACTATGGCGTGCCTTTGCATTTGTTACGGGAGCTCTACGAAACCTTCAGAAACTTCCAGATTCGTGTTTCCGATTACCTTCGTTATCGTAAGATCACGTCCAATATGAACGACAGGTTTCCTGATGCAACTCCTGAAGAACTTACTGCAAGTGATGCCACATGTATCATATGCCGTGAAGAGATGACAAATGCGAAGAAACTAATATGCGGGCATCTCTTTCATGTGCATTGTCTACGATCATGGTTGGAGAGACAGCAGACATGTCCTACTTGCAGAGCACTTGTTGTACCTCCTGAGAATGCCACCTCTGCAGCTCCAGGCCAACGTGAATTACACCAAGGTTCCCAACAGGGTACATCAAGCTCAGGTAACCAGGGCTCTGAAATAAGTTCTTCAGCTGGCGTTTCCAATAATAGTTTGAGCAGGCACCACGCCAGGCTTCAAGCAGCTGCTTCTGCAGCCTCCGTGTATGGGAAATCAATGGTTTACCCATCTGCAAACACAGTAGCATGGTCGTCGGGAGTTCCTGGAACAGAGCAAGTGTCAACTGAACCAGATCAAACTCTTCCTCAACACAACCTTCCTGTTGAAAACTCTCATGCCTATGCAAATATGTCGGAGACTAAGCTAGAAGAAATGAGAAAATCTCTGGAAACCCACCTCGAGATTTTGCGAAACCGACTTCACTTTCTGGAGACGAGGAAACCAGAATCCGCAGGGGAACCAGAGAACAAAGGAAAGTCGGTTGCTGATGCAGCAGAGTGAATACAGTGGAGAAAAAGAAAAACAGAACAAAAGGTAAGTAAGTGAAGCAGAGCAGATAGAGAAAGGAGAAAGAAGATTTGTGGTTCTTCTCAGAAAGACAAAAAAAACATGAATATCCCAAAAGTGTACATGTTTTATTATTATTGTTTATTCAGTGTCATAGAAATTAGAAGCTTGAGACTGAAACACAAACAGTTTTTTTTCTTACTTTAAAGTAATTGTTGGTTTGCATTTTAACGTGAGATTCTCTATATTAATATAACTCTTGAATGTTCCAATTTTTTAATATAATAAATCTTAATTACATAAGCC
CDS Sequence
- >AT3G16090.1
ATGATTCGACTAAGAACATACGCAGGCCTTAGTTTTATGGCAACTTTGGCTGTAATTTATCATGCATTCAGCAGCAGAGGCCAATTTTACCCTGCGACTGTTTATCTATCAACCTCAAAGATCAGTTTGGTGTTGCTTCTCAATATGTGTTTGGTTCTTATGCTTAGTCTCTGGCATTTGGTCAAATTTGTCTTCTTGGGGTCTCTTAGGGAAGCAGAAGTCGAGAGGCTAAATGAACAAGCTTGGAGAGAACTTATGGAGATTCTCTTTGCCATTACTATCTTTAGACAAGACTTTTCTAGTGGGTTTCTTCCTTTGGTTGTTACTCTTCTGTTGATCAAGGCTTTACATTGGCTTGCTCAGAAAAGAGTTGAATACATTGAGACTACTCCTTCTGTCTCTAAGCTTTCTCATTTTCGTATTGTCTCTTTTATGGGTTTCCTTCTTCTTGTGGATAGTTTATTTATGTACAGTTCTATACGCCACTTGATTCAGTCGCGTCAGGCTTCGGTTTCTCTCTTCTTCTCATTCGAGTATATGATACTGGCGACAACGACTGTTGCTATTTTTGTGAAGTATGTTTTCTATGTCACTGATATGTTAATGGATGGTCAATGGGAGAAGAAGCCAGTTTATACTTTCTATCTTGAGCTTATCCGTGACCTGCTTCACTTGTCCATGTATATCTGCTTCTTCTTTGTCATATTCATGAACTATGGCGTGCCTTTGCATTTGTTACGGGAGCTCTACGAAACCTTCAGAAACTTCCAGATTCGTGTTTCCGATTACCTTCGTTATCGTAAGATCACGTCCAATATGAACGACAGGTTTCCTGATGCAACTCCTGAAGAACTTACTGCAAGTGATGCCACATGTATCATATGCCGTGAAGAGATGACAAATGCGAAGAAACTAATATGCGGGCATCTCTTTCATGTGCATTGTCTACGATCATGGTTGGAGAGACAGCAGACATGTCCTACTTGCAGAGCACTTGTTGTACCTCCTGAGAATGCCACCTCTGCAGCTCCAGGCCAACGTGAATTACACCAAGGTTCCCAACAGGGTACATCAAGCTCAGGTAACCAGGGCTCTGAAATAAGTTCTTCAGCTGGCGTTTCCAATAATAGTTTGAGCAGGCACCACGCCAGGCTTCAAGCAGCTGCTTCTGCAGCCTCCGTGTATGGGAAATCAATGGTTTACCCATCTGCAAACACAGTAGCATGGTCGTCGGGAGTTCCTGGAACAGAGCAAGTGTCAACTGAACCAGATCAAACTCTTCCTCAACACAACCTTCCTGTTGAAAACTCTCATGCCTATGCAAATATGTCGGAGACTAAGCTAGAAGAAATGAGAAAATCTCTGGAAACCCACCTCGAGATTTTGCGAAACCGACTTCACTTTCTGGAGACGAGGAAACCAGAATCCGCAGGGGAACCAGAGAACAAAGGAAAGTCGGTTGCTGATGCAGCAGAGTGA
Protein Sequence
- >AT3G16090.1
MIRLRTYAGLSFMATLAVIYHAFSSRGQFYPATVYLSTSKISLVLLLNMCLVLMLSLWHLVKFVFLGSLREAEVERLNEQAWRELMEILFAITIFRQDFSSGFLPLVVTLLLIKALHWLAQKRVEYIETTPSVSKLSHFRIVSFMGFLLLVDSLFMYSSIRHLIQSRQASVSLFFSFEYMILATTTVAIFVKYVFYVTDMLMDGQWEKKPVYTFYLELIRDLLHLSMYICFFFVIFMNYGVPLHLLRELYETFRNFQIRVSDYLRYRKITSNMNDRFPDATPEELTASDATCIICREEMTNAKKLICGHLFHVHCLRSWLERQQTCPTCRALVVPPENATSAAPGQRELHQGSQQGTSSSGNQGSEISSSAGVSNNSLSRHHARLQAAASAASVYGKSMVYPSANTVAWSSGVPGTEQVSTEPDQTLPQHNLPVENSHAYANMSETKLEEMRKSLETHLEILRNRLHFLETRKPESAGEPENKGKSVADAAE