Information report for AT3G16080
Gene Details
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Functional Descriptions
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- GO:0003735 — enables — structural constituent of ribosome
- GO:0005737 — located in — cytoplasm
- GO:0022625 — part of — cytosolic large ribosomal subunit
- GO:0006412 — involved in — translation
- GO:0022625 — located in — cytosolic large ribosomal subunit
- GO:0003729 — enables — mRNA binding
- GO:0044085 — acts upstream of or within — cellular component biogenesis
- GO:0003723 — enables — RNA binding
- GO:0005829 — located in — cytosol
Functional Keywords
Literature and News
- The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome. DOI: 6834 ; PMID: 11598216
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Transcriptional profiling by cDNA-AFLP and microarray analysis reveals novel insights into the early response to ethylene in Arabidopsis. DOI: 10.1111/j.1365-313X.2004.02156.x ; PMID: 15272873
- Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. DOI: 10.1074/mcp.M700052-MCP200 ; PMID: 17934214
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Differential phosphorylation of ribosomal proteins in Arabidopsis thaliana plants during day and night. DOI: 10.1371/journal.pone.0029307 ; PMID: 22195043
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Plant cytoplasmic ribosomal proteins: an update on classification, nomenclature, evolution and resources. DOI: 10.1111/tpj.15667 ; PMID: 35000252
- An updated nomenclature for plant ribosomal protein genes. DOI: 10.1093/plcell/koac333 ; PMID: 36423343
- Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. DOI: 10.1074/mcp.M700052-MCP200 ; PMID: 17934214
Gene Resources
- UniProt: Q0WW79
- EMBL: AK226477
- AlphaFoldDB: Q0WW79
- EnsemblPlants: AT3G16080.1
- Gramene: AT3G16080.1
- KEGG: ath:AT3G16080
- Orthologous matrix: RMAYLKH
- ExpressionAtlas: AT3G16080
- InterPro: IPR001569, IPR011331, IPR011332
- PANTHER: PTHR10768, PTHR10768:SF25
- SUPFAM: SSF57829
- PROSITE: PS01077
- Gene3D: 2.20.25.30
- OrthoDB: Q0WW79
- SWISS-MODEL: Q0WW79
Homologs
- Gossypium hirsutum Gh_D02G0276
Sequences
cDNA Sequence
- >AT3G16080.1
AACAAAGGCCCATGCTTTTAAGTACAACCCTAGAATTAGAAAACGTTGATATAAATAAGCTGTCATAAAATTGAGCTTCTTCTTCTCTGAAGCCGTATCCTAGGGTTTTCTTTGCACACTACTCGCTCCAATGGGAAAGGGAACAGGGAGTTTCGGTAAGAGGAGGAACAAGAGTCACACACTCTGTGTGAGATGTGGTCGTCGTAGTTTCCACATCCAGAAGAGTCGTTGCTCGGCTTGTGCTTACCCAGCTGCTCGCAAGAGGACTTACAACTGGAGTGTGAAGGCCATCAGGAGGAAGACTACTGGTACCGGAAGGATGAGGTATCTCCGTAATGTTCCTCGTCGGTTCAAGACTGGATTCAGAGAAGGTACTGAAGCCAAGCCAAGGAGCAAGGCATCAGCTTCATCAGCTTAAAGAGCCAGTTCGAGTAGTCTCTCAGGAAGGACTAAAGCTTAGCATTTTTTGCATTCAACTAGTTGAAGATTACTTTTCATGTGGATCTCATACATTATGTTATGTGGGTTTTGTTTCTTTTGTTATTCACTTATAAAGTTTTGAACTTGGTTTAAATATCATCTTACATTTGCAACCTTAACAAGCCTTCTTCATAGGTTTCATTAGAGTCCTAGTTTTGATTGAATGATATCTTTGAAGTTCGCGTAAACCAACCTCAAACAAG - >AT3G16080.2
AACAAAGGCCCATGCTTTTAAGTACAACCCTAGAATTAGAAAACGTTGATATAAATAAGCTGTCATAAAATTGAGCTTCTTCTTCTCTGAAGCCGTATCCTAGGGTTTTCTTTGCACACTACTCGCTCCAATGGGAAAGGGAACAGGGAGTTTCGGTAAGAGGAGGAACAAGAGTCACACACTCTGTGTGAGATGTGGTCGTCGTAGTTTCCACATCCAGAAGAGTCGTTGCTCGGCTTGTGCTTACCCAGCTGCTCGCAAGAGGACTTACAACTGGAGTGTGAAGGCCATCAGGAGGAAGACTACTGGTACCGGAAGGATGAGGTATCTCCGTAATGTTCCTCGTCGGTTCAAGACTGGATTCAGAGAAGGTACTGAAGCCAAGCCAAGGAGCAAGGCATCAGCTTCATCAGCTTAAAGAGCCAGTTCGAGTAGTCTCTCAGGAAGGACTAAAGCTTAGCATTTTTTGCATTCAACTAGTTGAAGATTACTTTTCATGTGGATCTCATACATTATGTTATGTGGGTTTTGTTTCTTTTGTTATTCACTTATAAAGTTTTGAACTTGGTTTAAATATCATCTTACATTTGCAACCTTAACAAGCCTTCTTCATAGGTTTCATTAGAGTCCTAGTTTTGATTGAATGATATCTTTGAAGTTCGCGTAAACCAACCTCAAACAAG
CDS Sequence
- >AT3G16080.1
ATGGGAAAGGGAACAGGGAGTTTCGGTAAGAGGAGGAACAAGAGTCACACACTCTGTGTGAGATGTGGTCGTCGTAGTTTCCACATCCAGAAGAGTCGTTGCTCGGCTTGTGCTTACCCAGCTGCTCGCAAGAGGACTTACAACTGGAGTGTGAAGGCCATCAGGAGGAAGACTACTGGTACCGGAAGGATGAGGTATCTCCGTAATGTTCCTCGTCGGTTCAAGACTGGATTCAGAGAAGGTACTGAAGCCAAGCCAAGGAGCAAGGCATCAGCTTCATCAGCTTAA - >AT3G16080.2
ATGGGAAAGGGAACAGGGAGTTTCGGTAAGAGGAGGAACAAGAGTCACACACTCTGTGTGAGATGTGGTCGTCGTAGTTTCCACATCCAGAAGAGTCGTTGCTCGGCTTGTGCTTACCCAGCTGCTCGCAAGAGGACTTACAACTGGAGTGTGAAGGCCATCAGGAGGAAGACTACTGGTACCGGAAGGATGAGGTATCTCCGTAATGTTCCTCGTCGGTTCAAGACTGGATTCAGAGAAGGTACTGAAGCCAAGCCAAGGAGCAAGGCATCAGCTTCATCAGCTTAA
Protein Sequence
- >AT3G16080.1
MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA - >AT3G16080.2
MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA