Information report for AT3G16050
Gene Details
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Functional Descriptions
- PO:0000025 — root tip — punta de la raíz (Spanish, exact), 根端 (Japanese, exact)
- PO:0000036 — leaf vascular system — sistema vascular de la hoja (Spanish, exact), 葉維管系 (Japanese, exact), leaf venation (related)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009062 — gynoecium — ginoecio (Spanish, exact), gynaecium (exact), gynoecia (exact, plural), 雌蕊群 (Japanese, exact), Poaceae gynoecium (narrow), Zea gynoecium (narrow), apocarpous gynoecium (narrow), gynoecium of ear floret (narrow), gynoecium of lower floret of pedicellate spikelet of ear (narrow), gynoecium of lower floret of pedicellate spikelet of tassel (narrow), gynoecium of lower floret of sessile spikelet of ear (narrow), gynoecium of lower floret of sessile spikelet of tassel (narrow), gynoecium of tassel floret (narrow), gynoecium of upper floret of pedicellate spikelet of ear (narrow), gynoecium of upper floret of pedicellate spikelet of tassel (narrow), gynoecium of upper floret of sessile spikelet of ear (narrow), gynoecium of upper floret of sessile spikelet of tassel (narrow), syncarpous gynoecium (narrow), pistil (broad)
- GO:0042823 — involved in — pyridoxal phosphate biosynthetic process
- GO:0005829 — located in — cytosol
- GO:0005737 — located in — cytoplasm
- GO:0005515 — enables — protein binding
- GO:0046982 — enables — protein heterodimerization activity
- GO:0006520 — involved in — amino acid metabolic process
- GO:0008615 — involved in — pyridoxine biosynthetic process
- GO:0016843 — enables — amine-lyase activity
Literature and News
- Diverse RNA viruses elicit the expression of common sets of genes in susceptible Arabidopsis thaliana plants. DOI: 10.1046/j.1365-313x.2003.01625.x ; PMID: 12535341
- The response regulator 2 mediates ethylene signalling and hormone signal integration in Arabidopsis. DOI: 10.1038/sj.emboj.7600337 ; PMID: 15282545
- Genomewide nonadditive gene regulation in Arabidopsis allotetraploids. DOI: 10.1534/genetics.105.047894 ; PMID: 16172500
- Vitamin B6 biosynthesis in higher plants. DOI: 10.1073/pnas.0506228102 ; PMID: 16157873
- Pyridoxine is required for post-embryonic root development and tolerance to osmotic and oxidative stresses. DOI: 10.1111/j.1365-313X.2005.02538.x ; PMID: 16236150
- Arabidopsis mutants by activation tagging in which photosynthesis genes are expressed in dedifferentiated calli. DOI: 10.1093/pcp/pci242 ; PMID: 16597626
- Analysis of the Arabidopsis rsr4-1/pdx1-3 mutant reveals the critical function of the PDX1 protein family in metabolism, development, and vitamin B6 biosynthesis. DOI: 10.1105/tpc.105.036269 ; PMID: 16766694
- PDX1 is essential for vitamin B6 biosynthesis, development and stress tolerance in Arabidopsis. DOI: 10.1111/j.1365-313X.2006.02928.x ; PMID: 17227548
- Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings. DOI: 10.1111/j.1365-313X.2006.02979.x ; PMID: 17217462
- Impact of AtNHX1, a vacuolar Na+/H+ antiporter, upon gene expression during and long-term salt stress in Arabidopsis thaliana. DOI: 10.1186/1471-2229-7-18 ; PMID: 17411438
- Combining classifiers to predict gene function in Arabidopsis thaliana using large-scale gene expression measurements. DOI: 10.1186/1471-2105-8-358 ; PMID: 17888165
- Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes. DOI: 10.1104/pp.107.115592 ; PMID: 18305208
- The Arabidopsis SDG4 contributes to the regulation of pollen tube growth by methylation of histone H3 lysines 4 and 36 in mature pollen. DOI: 10.1016/j.ydbio.2007.12.016 ; PMID: 18252252
- Complex assembly and metabolic profiling of Arabidopsis thaliana plants overexpressing vitamin B₆ biosynthesis proteins. DOI: 10.1093/mp/ssq041 ; PMID: 20675613
- Analysis of the Arabidopsis rsr4-1/pdx1-3 mutant reveals the critical function of the PDX1 protein family in metabolism, development, and vitamin B6 biosynthesis. DOI: 10.1105/tpc.105.036269 ; PMID: 16766694
- PDX1 is essential for vitamin B6 biosynthesis, development and stress tolerance in Arabidopsis. DOI: 10.1111/j.1365-313X.2006.02928.x ; PMID: 17227548
Gene Resources
- UniProt: A0A654F8P6
- EMBL: CACRSJ010000106
- AlphaFoldDB: A0A654F8P6
- EnsemblPlants: AT3G16050.1
- Gramene: AT3G16050.1
- KEGG: ath:AT3G16050
- Orthologous matrix: FDNCSDP
- ExpressionAtlas: AT3G16050
- InterPro: IPR001852, IPR011060, IPR013785
- PANTHER: PTHR31829, PTHR31829:SF2
- SUPFAM: SSF51366
- PROSITE: PS01235, PS51129
- Gene3D: 3.20.20.70
- SWISS-MODEL: A0A654F8P6
Homologs
- Manihot esculenta Manes.11G051100
- Oryza sativa OsPDX1.1, OsPDX1.3, OsPDX1.2
- Prunus persica PRUPE_6G056900
Sequences
cDNA Sequence
- >AT3G16050.1
ATCAATCATCATCATGGAAGCCCACTTAGTTTCCTTTTTCTGCATACGACGCCGTTTTGCGATTCCACCCTAACCATTTCTCAGTGACGAACAGTCTCAGAAGTTTCTAGACCAAACCACACTCTTCTTCGTCTTCTCCGTTCTCTCTATATTTCTCCTCACCTTCAACGCAGCTTTCTCGTTCTCGTCTCAGATCGTGTTACTAACAAACACCGTTTCTCCGGCGAAAAGCTCTCTGTTACTAAAAACTCACAGAACCTAAAAATGGCGGATCAAGCTATGACGGATCAAGATCAAGGAGCTGTTACTCTCTACAGCGGCACAGCCATTACCGACGCGAAGAAAAACCATCCGTTCTCTGTTAAGGTCGGATTAGCTCAGGTACTTCGTGGCGGCGCCATTGTTGAAGTTTCCTCGGTTAACCAAGCTAAGCTCGCTGAATCCGCCGGCGCATGTTCTGTAATCGTCTCAGATCCGGTTCGATCTCGCGGCGGTGTTCGTCGTATGCCGGATCCGGTTCTCATCAAAGAGGTAAAACGAGCTGTGTCTGTACCTGTGATGGCACGAGCTCGCGTTGGTCATTTTGTTGAGGCTCAGATCTTGGAATCTCTTGCGGTTGATTACATTGACGAGAGCGAGATTATCTCTGTTGCGGATGATGATCATTTCATCAACAAACATAATTTCCGATCTCCGTTCATTTGTGGTTGCCGTGATACAGGAGAAGCTTTGAGGAGAATCAGAGAAGGTGCTGCTATGATTAGGATCCAAGGAGATTTAACCGCAACAGGTAACATTGCAGAGACTGTGAAGAACGTTAGGTCATTGATGGGTGAAGTTAGAGTCTTGAACAACATGGATGATGATGAGGTGTTCACGTTTGCTAAGAAGATTTCAGCACCGTATGATCTTGTGGCTCAGACTAAGCAGATGGGTAGGGTTCCGGTTGTTCAGTTTGCATCAGGTGGGATCACGACTCCTGCTGATGCAGCTTTGATGATGCAGCTAGGTTGTGATGGGGTTTTTGTGGGTTCTGAGGTTTTTGATGGTCCTGATCCGTTTAAGAAACTTAGGAGCATTGTTCAAGCTGTTCAACATTACAATGATCCTCATGTGTTGGCTGAGATGAGTTCTGGATTGGAGAATGCAATGGAGAGCTTAAATGTTCGTGGTGACAGGATTCAAGACTTTGGCCAAGGCAGTGTTTGATGAAAAGGTTCGAAGCTGCAAACTTTTTGGGACTTCTAAAGTCGTAATCTTTTTTGGTTTTGAGTCTCAAAATATCGGTTGTTTTTTGTTAATGCTGGTGCATATGATCCGTTTGGTTTAATCGAAACTTGCAACAACTAAAACCTCAATGAAAAGTTGCAGAATTTTTGA
CDS Sequence
- >AT3G16050.1
ATGGCGGATCAAGCTATGACGGATCAAGATCAAGGAGCTGTTACTCTCTACAGCGGCACAGCCATTACCGACGCGAAGAAAAACCATCCGTTCTCTGTTAAGGTCGGATTAGCTCAGGTACTTCGTGGCGGCGCCATTGTTGAAGTTTCCTCGGTTAACCAAGCTAAGCTCGCTGAATCCGCCGGCGCATGTTCTGTAATCGTCTCAGATCCGGTTCGATCTCGCGGCGGTGTTCGTCGTATGCCGGATCCGGTTCTCATCAAAGAGGTAAAACGAGCTGTGTCTGTACCTGTGATGGCACGAGCTCGCGTTGGTCATTTTGTTGAGGCTCAGATCTTGGAATCTCTTGCGGTTGATTACATTGACGAGAGCGAGATTATCTCTGTTGCGGATGATGATCATTTCATCAACAAACATAATTTCCGATCTCCGTTCATTTGTGGTTGCCGTGATACAGGAGAAGCTTTGAGGAGAATCAGAGAAGGTGCTGCTATGATTAGGATCCAAGGAGATTTAACCGCAACAGGTAACATTGCAGAGACTGTGAAGAACGTTAGGTCATTGATGGGTGAAGTTAGAGTCTTGAACAACATGGATGATGATGAGGTGTTCACGTTTGCTAAGAAGATTTCAGCACCGTATGATCTTGTGGCTCAGACTAAGCAGATGGGTAGGGTTCCGGTTGTTCAGTTTGCATCAGGTGGGATCACGACTCCTGCTGATGCAGCTTTGATGATGCAGCTAGGTTGTGATGGGGTTTTTGTGGGTTCTGAGGTTTTTGATGGTCCTGATCCGTTTAAGAAACTTAGGAGCATTGTTCAAGCTGTTCAACATTACAATGATCCTCATGTGTTGGCTGAGATGAGTTCTGGATTGGAGAATGCAATGGAGAGCTTAAATGTTCGTGGTGACAGGATTCAAGACTTTGGCCAAGGCAGTGTTTGA
Protein Sequence
- >AT3G16050.1
MADQAMTDQDQGAVTLYSGTAITDAKKNHPFSVKVGLAQVLRGGAIVEVSSVNQAKLAESAGACSVIVSDPVRSRGGVRRMPDPVLIKEVKRAVSVPVMARARVGHFVEAQILESLAVDYIDESEIISVADDDHFINKHNFRSPFICGCRDTGEALRRIREGAAMIRIQGDLTATGNIAETVKNVRSLMGEVRVLNNMDDDEVFTFAKKISAPYDLVAQTKQMGRVPVVQFASGGITTPADAALMMQLGCDGVFVGSEVFDGPDPFKKLRSIVQAVQHYNDPHVLAEMSSGLENAMESLNVRGDRIQDFGQGSV