Gene Details:
- Gene ID: AT3G15460
- Gene Symbol: atBRX1-1
- Gene Name: Arabidopsis homologue of yeast Brx1 1
- Description: Ribosomal RNA processing Brix domain protein;(source:Araport11)
- TAIR Accession: locus:2090131
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Gene Ontology:
- GO:0000027 — involved in — ribosomal large subunit assembly
- GO:0005730 — located in — nucleolus
- GO:0006364 — acts upstream of or within — rRNA processing
- GO:0000027 — acts upstream of or within — ribosomal large subunit assembly
- GO:0005634 — located in — nucleus
- GO:0019843 — enables — rRNA binding
- GO:0003723 — enables — RNA binding
- GO:0005730 — is active in — nucleolus
Germplasm Phenotype:
- brx1-1 — Growth delay. Impaired development of rosette leaves and delay in flowering.
Function-related keywords:
Literature:
- Transcriptome analysis of Arabidopsis clubroots indicate a key role for cytokinins in disease development. DOI: 10.1094/MPMI-19-0480 ; PMID: 16673935
- Genetic variation suggests interaction between cold acclimation and metabolic regulation of leaf senescence. DOI: 10.1104/pp.106.091355 ; PMID: 17098848
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- atBRX1-1 and atBRX1-2 are involved in an alternative rRNA processing pathway in Arabidopsis thaliana. DOI: 10.1261/rna.047563.114 ; PMID: 25605960
- Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. DOI: 10.1186/s12870-018-1255-z ; PMID: 29490615
- Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. DOI: 10.1021/pr1009433 ; PMID: 21166475
Sequences:
cDNA Sequence
- >AT3G15460.1
AGGTTGTTGAGTTTTGTACTAAAACCCTAAATCAGAGAATTTAGCGTTGTTTCTTCTTCAATAGACACAAAAAATGGGGAGGAAGAGAAAGCACAGCGAGACTGTTACGGCGGCACCGGTGAAGGATTCTGCTCCGGAGAGACCTCAAAGGACTCTTTTGGGTTGGAAAGATAAGAAGGAAGATGCTGAGAACTCTAAACCTGCGTATGCGTCTGTATTCAGGAATAAAGAGAAGGTTCTCGTTACTTGTTCCCGTCGGATCAATTTCAGGTATCGACATTTGATGTTGAACATGGTGTCACTTTTACCTCACTGTAAGAAGGATAGTAAGGTAGAAGCTAAGAGCAGTAGAGGTGCCACTCTTAATGAGCTCATCGAGCTTAAGGGCTCTTCTTCCTGTTTGTTTTTCGAGTGTAGGAAGCACAAAGATCTTTACATGTGGATGGTGAAGTCCCCTGGTGGACCTTCCGTTAAGTTCTTGGTTAATGCTGTTCACACAATGGAGGAGCTGAAACTCACTGGAAATCATCTGAAAGGTTCACGCCCACTTTTGACATTCTCATCCAATTTTGAAAACGATGCACACTGGAAACTTCTGAAAGAGATGTTAACTCAGATTTTTGGAATTCCCGAGGGACATAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATATATGGTTCCGTAATTACCAGATATCGGTACCTCATAACGAGTCAGACAAGATTGCACGAGGCGATCTGGATAAAATGACTCTTATTGAGGTTGGTCCAAGGTTTTGTTTAAATCCAATTAAGATATTTGGAGGCAGCTTTGGAGGTACAACGCTTTACGAGAACCCATTCTATGTATCTCCAAACCAGATTCGAGCTTTGGAGAAAAGAAATAAAGCTGGGAAATTTGCTAAGAAAATAAAGGCAAAAACAAGAAGAAAGATGCATGAACTCTCAAACCCATTGGAGCCTGATGAATTTACAGACATGTGGAACGATGAATGATAAAAGTCGACCAAAGTTTCTTTTTTGCTATTGTAAACTTCTAAATTCACAAAATCAACACAGTTTTGTCTTTACCACTGCTTTCTTCCCTCCCTCTTATCTATCAAAGAGTGAGATTGCGAATTTATCACACAGTTGTCTAAGTAAAGACTGCTATGTCACGAAGAAGCAAATCAATTTTATTTCTTTATCGTC
CDS Sequence
- >AT3G15460.1
ATGGGGAGGAAGAGAAAGCACAGCGAGACTGTTACGGCGGCACCGGTGAAGGATTCTGCTCCGGAGAGACCTCAAAGGACTCTTTTGGGTTGGAAAGATAAGAAGGAAGATGCTGAGAACTCTAAACCTGCGTATGCGTCTGTATTCAGGAATAAAGAGAAGGTTCTCGTTACTTGTTCCCGTCGGATCAATTTCAGGTATCGACATTTGATGTTGAACATGGTGTCACTTTTACCTCACTGTAAGAAGGATAGTAAGGTAGAAGCTAAGAGCAGTAGAGGTGCCACTCTTAATGAGCTCATCGAGCTTAAGGGCTCTTCTTCCTGTTTGTTTTTCGAGTGTAGGAAGCACAAAGATCTTTACATGTGGATGGTGAAGTCCCCTGGTGGACCTTCCGTTAAGTTCTTGGTTAATGCTGTTCACACAATGGAGGAGCTGAAACTCACTGGAAATCATCTGAAAGGTTCACGCCCACTTTTGACATTCTCATCCAATTTTGAAAACGATGCACACTGGAAACTTCTGAAAGAGATGTTAACTCAGATTTTTGGAATTCCCGAGGGACATAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATATATGGTTCCGTAATTACCAGATATCGGTACCTCATAACGAGTCAGACAAGATTGCACGAGGCGATCTGGATAAAATGACTCTTATTGAGGTTGGTCCAAGGTTTTGTTTAAATCCAATTAAGATATTTGGAGGCAGCTTTGGAGGTACAACGCTTTACGAGAACCCATTCTATGTATCTCCAAACCAGATTCGAGCTTTGGAGAAAAGAAATAAAGCTGGGAAATTTGCTAAGAAAATAAAGGCAAAAACAAGAAGAAAGATGCATGAACTCTCAAACCCATTGGAGCCTGATGAATTTACAGACATGTGGAACGATGAATGA
Protein Sequence
- >AT3G15460.1
MGRKRKHSETVTAAPVKDSAPERPQRTLLGWKDKKEDAENSKPAYASVFRNKEKVLVTCSRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHKDLYMWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEMLTQIFGIPEGHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGDLDKMTLIEVGPRFCLNPIKIFGGSFGGTTLYENPFYVSPNQIRALEKRNKAGKFAKKIKAKTRRKMHELSNPLEPDEFTDMWNDE