Information report for AT3G15140
Gene Details
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Functional Descriptions
- GO:0003676 — enables — nucleic acid binding
- GO:0005737 — located in — cytoplasm
- GO:0000175 — enables — 3-5-RNA exonuclease activity
- GO:0035194 — acts upstream of or within — regulatory ncRNA-mediated post-transcriptional gene silencing
- GO:0000467 — involved in — exonucleolytic trimming to generate mature 3-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0000467 27813 P other cellular processes IBA none PANTHER:PTN000548991|WB:WBGene00001332|PomBase:SPBC30B4.08 Communication:501741973 2023-04-13 AT3G15140 locus:2083636 AT3G15140 acts upstream of or within regulatory ncRNA-mediated post-transcriptional gene silencing GO:0035194 19038 P other metabolic processes IMP Analysis of overexpression/ectopic expression phenotype NONE Publication:501766118|PMID:26257748 TAIR 2015-09-21 AT3G15140 locus:2083636 AT3G15140 enables 3-5-RNA exonuclease activity GO:0000175 800 F nuclease activity IBA none PANTHER:PTN000548991|PomBase:SPBC30B4.08|FB:FBgn0265192|WB:WBGene00001332 Communication:501741973 2023-06-07 AT3G15140 locus:2083636 AT3G15140 located in mitochondrion GO:0005739 486 C mitochondrion HDA none NONE Publication:501745216|PMID:21908688 Reena 2021-04-07 AT3G15140 locus:2083636 AT3G15140 involved in exonucleolytic trimming to generate mature 3-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
- GO:0000467 — enables — RNA endonuclease activity, producing 5-phosphomonoesters GO:0016891 2248 F nuclease activity IMP Analysis of overexpression/ectopic expression phenotype Publication:501766118|PMID:26257748 TAIR 2015-09-21
Functional Keywords
Literature and News
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes. DOI: 10.1016/j.cub.2010.01.051 ; PMID: 20226671
- In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis. DOI: 10.1104/pp.111.183129 ; PMID: 21908688
- ribonucleases are key players in the control of plastid gene expression. DOI: 10.1093/jxb/err401 ; PMID: 22140236
Gene Resources
- UniProt: A0A1I9LRX2
- EMBL: CP002686
- AlphaFoldDB: A0A1I9LRX2
- EnsemblPlants: AT3G15140.2
- Gramene: AT3G15140.2
- Orthologous matrix: GSHHLGF
- ExpressionAtlas: AT3G15140
- InterPro: IPR012337, IPR013520, IPR036397
- PANTHER: PTHR23044, PTHR23044:SF61
- SUPFAM: SSF53098
- Gene3D: 3.30.420.10
- SWISS-MODEL: A0A1I9LRX2
- Conserved Domain Database: cd06133
Homologs
- Brachypodium distachyon Bradi1g58930
Sequences
cDNA Sequence
- >AT3G15140.2
TTTAAATTTAGTTTTTGCTACAGCGGAATGCGGAATTAAATTCCATTTCTTTATTGATTGGTTCCTGCTCCGTATGCTTGTTCGAAAACAAGTGATGCGAAATTTGAATCAACTATGCAATGTCTGCGACCTGTTCGATGGAATGTCTGAACGAGATTGGAACTTGTTTATTATGGATGATCCTGCCCATTTGGAGATTTTTAACCACGATTGTTCAAAGGAACTTCGAGTGGCTGCTGCTGATCTTGAGAGAAAGAAGTCACAAGAATTCAATTTTTTCTTGGTTATTGACTTGGAAGGAAAAGTTGAGATTCTTGAGTTTCCTATTTTGATCGTAGATGCCAAAACCATGGAAGTCGTAGACTTATTCCACAGGTTTGTAAGACCCACCAAAATGAGCGAGCAAGCAATTAACAAATACATCGAAGGCAAGTATGGGGAACTCGGGGTTGATCGTGTGTGGCATGACACAGCTATTCCATTTAAGCAAGTTGTTGAGGAGTTTGAAGTTTGGTTAGCTGAGCATGACTTGTGGGATAAAGATACAGATTGGGGTCTGAACGATGCAGCTTTTGTAACCTGTGGAAACTGGGATATAAAGACAAAGATTCCTGAGCAATGCGTAGTTTCAAACATCAATCTTCCGCCATATTTTATGGAGTGGATCAATCTCAAAGACGTCTACTTGAATTTCTATGGCCGTGAGGCAAGAGGAATGGTGTCAATGATGAGGCAGTGTGGAATAAAACTCATGGGAAGCCACCATCTGGGCATTGATGACACAAAGAACATCACGAGGGTGGTGCAACGGATGCTCTCAGAAGGTGCAGTTCTCAAGCTCACAGCTCGAAGGAGCAAATCCAATATGAGAAACGTCGAGTTTCTCTTCAAGAACAGGATCAAGTAAAGCTCTCAAGGAAAAATGACAAACCCAACAAGCTCCATGATCCATAAATTAGTTACTTAGTCAAGTCTTTTGAGTATTAAGATGATAACTCTTAGAAGACAATGTGGTTACGCCTAAATGTGATGTGGTGAGAAGGTTTTGTAGATTCACATGTTTCAGAGCTATGATATTTAGATTACGAAGACATAAGAGGCCCATGAATTGGCCCAAAAATGCTTGGTAGCAACTTTTTGTAGGAAAATCTGAGAATCTCGAAAATGAATAAGAG - >AT3G15140.1
TTTAAATTTAGTTTTTGCTACAGCGGAATGCGGAATTAAATTCCATTTCTTTATTGATTGGTTCCTGCTCCGTATGCTTGTTCGAAAACAAGTGATGCGAAATTTGAATCAACTATGCAATGTCTGCGACCTGTTCGATGGAATGTCTGAACGAGATTGGAACTTGTTTATTATGGATGATCCTGCCCATTTGGAGATTTTTAACCACGATTGTTCAAAGGAACTTCGAGTGGCTGCTGCTGATCTTGAGAGAAAGAAGTCACAAGAATTCAATTTTTTCTTGGTTATTGACTTGGAAGGAAAAGTTGAGATTCTTGAGTTTCCTATTTTGATCGTAGATGCCAAAACCATGGAAGTCGTAGACTTATTCCACAGGTTTGTAAGACCCACCAAAATGAGCGAGCAAGCAATTAACAAATACATCGAAGGCAAGTATGGGGAACTCGGGGTTGATCGTGTGTGGCATGACACAGCTATTCCATTTAAGCAAGTTGTTGAGGAGTTTGAAGTTTGGTTAGCTGAGCATGACTTGTGGGATAAAGATACAGATTGGGGTCTGAACGATGCAGCTTTTGTAACCTGTGGAAACTGGGATATAAAGACAAAGATTCCTGAGCAATGCGTAGTTTCAAACATCAATCTTCCGCCATATTTTATGGAGTGGATCAATCTCAAAGACGTCTACTTGAATTTCTATGGCCGTGAGGCAAGAGGAATGGTGTCAATGATGAGGCAGTGTGGAATAAAACTCATGGGAAGCCACCATCTGGGCATTGATGACACAAAGAACATCACGAGGGTGGTGCAACGGATGCTCTCAGAAGGTGCAGTTCTCAAGCTCACAGCTCGAAGGAGCAAATCCAATATGAGAAACGTCGAGTTTCTCTTCAAGAACAGGATCAAGTAAAGCTCTCAAGGAAAAATGACAAACCCAACAAGCTCCATGATCCATAAATTAGTTACTTAGTCAAGTCTTTTGAGTATTAAGATGATAACTCTTAGAAGACAATGTGGTTACGCCTAAATGTGATGTGGTGAGAAGGTTTTGTAGATTCACATGTTTCAGAGCTATGATATTTAGATTACGAAGACATAAGAGGCCCATGAATTGGCCCAAAAATGCTTGGTAGCAACTTTTTGTAGGAAAATCTGAGAATCTCGAAAATGAATAAGAG
CDS Sequence
- >AT3G15140.2
ATGCTTGTTCGAAAACAAGTGATGCGAAATTTGAATCAACTATGCAATGTCTGCGACCTGTTCGATGGAATGTCTGAACGAGATTGGAACTTGTTTATTATGGATGATCCTGCCCATTTGGAGATTTTTAACCACGATTGTTCAAAGGAACTTCGAGTGGCTGCTGCTGATCTTGAGAGAAAGAAGTCACAAGAATTCAATTTTTTCTTGGTTATTGACTTGGAAGGAAAAGTTGAGATTCTTGAGTTTCCTATTTTGATCGTAGATGCCAAAACCATGGAAGTCGTAGACTTATTCCACAGGTTTGTAAGACCCACCAAAATGAGCGAGCAAGCAATTAACAAATACATCGAAGGCAAGTATGGGGAACTCGGGGTTGATCGTGTGTGGCATGACACAGCTATTCCATTTAAGCAAGTTGTTGAGGAGTTTGAAGTTTGGTTAGCTGAGCATGACTTGTGGGATAAAGATACAGATTGGGGTCTGAACGATGCAGCTTTTGTAACCTGTGGAAACTGGGATATAAAGACAAAGATTCCTGAGCAATGCGTAGTTTCAAACATCAATCTTCCGCCATATTTTATGGAGTGGATCAATCTCAAAGACGTCTACTTGAATTTCTATGGCCGTGAGGCAAGAGGAATGGTGTCAATGATGAGGCAGTGTGGAATAAAACTCATGGGAAGCCACCATCTGGGCATTGATGACACAAAGAACATCACGAGGGTGGTGCAACGGATGCTCTCAGAAGGTGCAGTTCTCAAGCTCACAGCTCGAAGGAGCAAATCCAATATGAGAAACGTCGAGTTTCTCTTCAAGAACAGGATCAAGTAA - >AT3G15140.1
ATGCTTGTTCGAAAACAAGTGATGCGAAATTTGAATCAACTATGCAATGTCTGCGACCTGTTCGATGGAATGTCTGAACGAGATTGGAACTTGTTTATTATGGATGATCCTGCCCATTTGGAGATTTTTAACCACGATTGTTCAAAGGAACTTCGAGTGGCTGCTGCTGATCTTGAGAGAAAGAAGTCACAAGAATTCAATTTTTTCTTGGTTATTGACTTGGAAGGAAAAGTTGAGATTCTTGAGTTTCCTATTTTGATCGTAGATGCCAAAACCATGGAAGTCGTAGACTTATTCCACAGGTTTGTAAGACCCACCAAAATGAGCGAGCAAGCAATTAACAAATACATCGAAGGCAAGTATGGGGAACTCGGGGTTGATCGTGTGTGGCATGACACAGCTATTCCATTTAAGCAAGTTGTTGAGGAGTTTGAAGTTTGGTTAGCTGAGCATGACTTGTGGGATAAAGATACAGATTGGGGTCTGAACGATGCAGCTTTTGTAACCTGTGGAAACTGGGATATAAAGACAAAGATTCCTGAGCAATGCGTAGTTTCAAACATCAATCTTCCGCCATATTTTATGGAGTGGATCAATCTCAAAGACGTCTACTTGAATTTCTATGGCCGTGAGGCAAGAGGAATGGTGTCAATGATGAGGCAGTGTGGAATAAAACTCATGGGAAGCCACCATCTGGGCATTGATGACACAAAGAACATCACGAGGGTGGTGCAACGGATGCTCTCAGAAGGTGCAGTTCTCAAGCTCACAGCTCGAAGGAGCAAATCCAATATGAGAAACGTCGAGTTTCTCTTCAAGAACAGGATCAAGTAA
Protein Sequence
- >AT3G15140.2
MLVRKQVMRNLNQLCNVCDLFDGMSERDWNLFIMDDPAHLEIFNHDCSKELRVAAADLERKKSQEFNFFLVIDLEGKVEILEFPILIVDAKTMEVVDLFHRFVRPTKMSEQAINKYIEGKYGELGVDRVWHDTAIPFKQVVEEFEVWLAEHDLWDKDTDWGLNDAAFVTCGNWDIKTKIPEQCVVSNINLPPYFMEWINLKDVYLNFYGREARGMVSMMRQCGIKLMGSHHLGIDDTKNITRVVQRMLSEGAVLKLTARRSKSNMRNVEFLFKNRIK - >AT3G15140.1
MLVRKQVMRNLNQLCNVCDLFDGMSERDWNLFIMDDPAHLEIFNHDCSKELRVAAADLERKKSQEFNFFLVIDLEGKVEILEFPILIVDAKTMEVVDLFHRFVRPTKMSEQAINKYIEGKYGELGVDRVWHDTAIPFKQVVEEFEVWLAEHDLWDKDTDWGLNDAAFVTCGNWDIKTKIPEQCVVSNINLPPYFMEWINLKDVYLNFYGREARGMVSMMRQCGIKLMGSHHLGIDDTKNITRVVQRMLSEGAVLKLTARRSKSNMRNVEFLFKNRIK