Information report for AT3G13570
Gene Details
|
|
Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Functional Keywords
Literature and News
- Network of interactions of a novel plant-specific Arg/Ser-rich protein, atRSZ33, with atSC35-like splicing factors. DOI: 10.1074/jbc.M206455200 ; PMID: 12176998
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Use of fluorescent protein tags to study nuclear organization of the spliceosomal machinery in transiently transformed living plant cells. DOI: 10.1091/mbc.e04-01-0055 ; PMID: 15133128
- A plethora of plant serine/arginine-rich proteins: redundancy or evolution of novel gene functions? DOI: 10.1042/BST0320561 ; PMID: 15270675
- Biosynthesis of cellulose-enriched tension wood in Populus: global analysis of transcripts and metabolites identifies biochemical and developmental regulators in secondary wall biosynthesis. DOI: 10.1111/j.1365-313X.2005.02584.x ; PMID: 16367961
- AtCyp59 is a multidomain cyclophilin from Arabidopsis thaliana that interacts with SR proteins and the C-terminal domain of the RNA polymerase II. DOI: 10.1261/rna.2226106 ; PMID: 16497658
- Survey of conserved alternative splicing events of mRNAs encoding SR proteins in land plants. DOI: 10.1093/molbev/msj118 ; PMID: 16520337
- Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism. DOI: 10.1093/nar/gkl429 ; PMID: 16807317
- Differential expression of alternatively spliced mRNAs of Arabidopsis SR protein homologs, atSR30 and atSR45a, in response to environmental stress. DOI: 10.1093/pcp/pcm069 ; PMID: 17556373
- Arabidopsis CBF5 interacts with the H/ACA snoRNP assembly factor NAF1. DOI: 10.1007/s11103-007-9226-z ; PMID: 17712600
- Alternative splicing at NAGNAG acceptors in Arabidopsis thaliana SR and SR-related protein-coding genes. DOI: 10.1186/1471-2164-9-159 ; PMID: 18402682
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Implementing a rational and consistent nomenclature for serine/arginine-rich protein splicing factors (SR proteins) in plants. DOI: 10.1105/tpc.110.078352 ; PMID: 20884799
- Comparative analysis of serine/arginine-rich proteins across 27 eukaryotes: insights into sub-family classification and extent of alternative splicing. DOI: 10.1371/journal.pone.0024542 ; PMID: 21935421
- Identification of an intronic splicing regulatory element involved in auto-regulation of alternative splicing of SCL33 pre-mRNA. DOI: 10.1111/tpj.12004 ; PMID: 22913769
- Abscisic acid (ABA) regulation of Arabidopsis SR protein gene expression. DOI: 10.3390/ijms151017541 ; PMID: 25268622
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism. DOI: 10.1093/nar/gkl429 ; PMID: 16807317
Gene Resources
- UniProt: A0A654F8H6
- EMBL: CACRSJ010000106
- AlphaFoldDB: A0A654F8H6
- EnsemblPlants: AT3G13570.1
- Gramene: AT3G13570.1
- KEGG: ath:AT3G13570
- Orthologous matrix: RFHDQRD
- ExpressionAtlas: AT3G13570
- InterPro: IPR000504, IPR012677, IPR035979
- PANTHER: PTHR23147
- SUPFAM: SSF54928
- PROSITE: PS50102
- Gene3D: 3.30.70.330
- SWISS-MODEL: A0A654F8H6
Homologs
- Actinidia chinensis CEY00_Acc11657
- Manihot esculenta MANES_14G165400
- Oryza sativa OsSCL30
- Triticum aestivum TraesCS2D02G169700
Sequences
cDNA Sequence
- >AT3G13570.1
AACCCTAATGACCCGTTCGCTTCAGACCATAAGATCCAAAACCATAAAACTAGGTTTCACACTTTCTCTCTAAACACTGTCTCTTTTCTCCGATACATATCCCGCCGCTTCCCCTGTGTTTTTCTTCGCCGTCCGTCGTTCTTTTCAACTCCTTAGCTGCGATATTAAAGTCTAGACACAATGAGAGGAAGGAGCTACACGCCATCACCACCAAGGGGTTATGGAAGGAGGGGCCGGAGCCCTAGCCCTCGGGGCCGGTTTGGTGGGAGTCGTGACAGTGATCTCCCAACCAGTCTCTTGGTTCGCAACTTACGTCATGATTGCAGGCAAGAAGACCTCAGGAGGCCATTTGAGCAGTTTGGTCCCGTCAAGGACATCTACCTTCCTAGGGATTACTATACTGGAGATCCAAGGGGGTTTGGATTCATTCAGTTTATGGATCCTGCTGATGCTGCTGAGGCTAAACATCAAATGGATGGTTATCTTCTTCTTGGTCGTGAGTTGACTGTCGTATTTGCTGAAGAAAACCGGAAGAAGCCAACTGAGATGAGAACAAGGGATCGAGGTGGAAGGAGCAACAGATTCCAGGACAGAAGACGTTCTCCTCCTCGGTACTCTCGGTCTCCTCCTCCTCGCCGTGGTCGTAGATCACGATCACGTAGCCGCGGCTATAATTCTCCTCCCGCTAAAAGACATCAATCTAGGTCTGTCTCACCTCAGGATAGACGATATGAGAAGGAGAGGTCATACTCTCGCTCACCACCCCATAATGGCTCAAGGGTTCGCAGTGGAAGTCCTGGGAGAGTGAAGAGCCACAGCAGAAGCCCAAGAAGAAGCGTGAGCCCAAGAAAAAACAGGAGCTACACGCCAGAACAAGCAAGGAGCCAAAGCCCTGTCCCTAGGCAGAGCAGGAGCCCGACCCCAGTCCCTCGTGGAGCACAAAATGGAGACCGTTCTCCAAGCCAGTGATTTATGATTACACCATATATCTCTCTACTCTTCAGTTTTTCAGTCTTGTTCTGTTTGATCAGATATTTTGTTTGCCTCAGATTGATATTTCCCTACTTAGACAGATATTTGTAGTGCTATTGGTATTTTGCTTTATGTTTGATCCATGGATGATCTTGAGACAGTATTTTGAATTAGCATGTGTTATTTGTCATCTTATCTTTTTAGATCTCATCTAACATTGTTATGGTGAAAAAGATGGTCCTATTATGGGAGCTTTTTGACGTAAGGCTCCTTTTGTTTTGAATCGGCATTTGAACACTTTCCAG
CDS Sequence
- >AT3G13570.1
ATGAGAGGAAGGAGCTACACGCCATCACCACCAAGGGGTTATGGAAGGAGGGGCCGGAGCCCTAGCCCTCGGGGCCGGTTTGGTGGGAGTCGTGACAGTGATCTCCCAACCAGTCTCTTGGTTCGCAACTTACGTCATGATTGCAGGCAAGAAGACCTCAGGAGGCCATTTGAGCAGTTTGGTCCCGTCAAGGACATCTACCTTCCTAGGGATTACTATACTGGAGATCCAAGGGGGTTTGGATTCATTCAGTTTATGGATCCTGCTGATGCTGCTGAGGCTAAACATCAAATGGATGGTTATCTTCTTCTTGGTCGTGAGTTGACTGTCGTATTTGCTGAAGAAAACCGGAAGAAGCCAACTGAGATGAGAACAAGGGATCGAGGTGGAAGGAGCAACAGATTCCAGGACAGAAGACGTTCTCCTCCTCGGTACTCTCGGTCTCCTCCTCCTCGCCGTGGTCGTAGATCACGATCACGTAGCCGCGGCTATAATTCTCCTCCCGCTAAAAGACATCAATCTAGGTCTGTCTCACCTCAGGATAGACGATATGAGAAGGAGAGGTCATACTCTCGCTCACCACCCCATAATGGCTCAAGGGTTCGCAGTGGAAGTCCTGGGAGAGTGAAGAGCCACAGCAGAAGCCCAAGAAGAAGCGTGAGCCCAAGAAAAAACAGGAGCTACACGCCAGAACAAGCAAGGAGCCAAAGCCCTGTCCCTAGGCAGAGCAGGAGCCCGACCCCAGTCCCTCGTGGAGCACAAAATGGAGACCGTTCTCCAAGCCAGTGA
Protein Sequence
- >AT3G13570.1
MRGRSYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKPTEMRTRDRGGRSNRFQDRRRSPPRYSRSPPPRRGRRSRSRSRGYNSPPAKRHQSRSVSPQDRRYEKERSYSRSPPHNGSRVRSGSPGRVKSHSRSPRRSVSPRKNRSYTPEQARSQSPVPRQSRSPTPVPRGAQNGDRSPSQ