Gene Details:
- Gene ID: AT3G13400
- Gene Symbol: SKS13
- Gene Name: SKU5-Similar 13
- Description: SKU5 similar 13;(source:Araport11)
- TAIR Accession:
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Function-related keywords:
- plant embryo , stamen , sepal , flower , inflorescence flower pedicel , collective leaf structure , pollen
Literature:
- The Arabidopsis SKU5 gene encodes an extracellular glycosyl phosphatidylinositol-anchored glycoprotein involved in directional root growth. DOI: 10.1105/tpc.002360 ; PMID: 12119380
- MicroRNAs in plants. DOI: 10.1101/gad.1004402 ; PMID: 12101121
- Use of serial analysis of gene expression technology to reveal changes in gene expression in Arabidopsis pollen undergoing cold stress. DOI: 10.1104/pp.103.020511 ; PMID: 12805584
- SKS6, a multicopper oxidase-like gene, participates in cotyledon vascular patterning during Arabidopsis thaliana development. DOI: 10.1007/s00425-005-0012-3 ; PMID: 15986216
- Evolution of Arabidopsis microRNA families through duplication events. DOI: 10.1101/gr.4680506 ; PMID: 16520461
- Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106. DOI: 10.1104/pp.108.126979 ; PMID: 18805951
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
Sequences:
cDNA Sequence
- >AT3G13400.1
CTTCTTTAGAGACATGTCCAATAATAGAATAAGATCCGAGTTGTGTGCTCGTTAGAGAAATCGGGAGTCCTAAGGACCAGCGAGCGAGAGAGATTCAAAAATAGAAATTTCACGTAAAGAGAATTAGAGGTGCAGCGTGAAAAGAGGCAACAATTCCGTGCATACCAAGGTCCTTCACCTGCATAAATAGAAAAGAGATAATGCAGGGTGGTAGGCTTTTGACGGTGTTGGTGTGCCTCGCCTCCACGGTGGCGTTGGTGAGCGCCGGTGACCCTTACTTCTACTACACGTGGAACGTAACCTACGGAACCGCCGCGCCTCTCGGAATTCCTCAACAGGTGATTCTCATCAACGGACAGTTCCCTGGTCCTAACCTAAACTCAACCTCCAACAACAATGTCGTCATCAATGTCTTCAACAACCTCGACGAGCCTTTCCTCTTGACCTGGAGTGGACTCCAGCACAGGAAGAACTCATGGCAAGATGGTGTGACTGGGACCTCATGCCCAATCCCAGCAGGCACCAACTTCACTTACCATTTCCAGCCTAAGGACCAGATCGGTAGCTACTTCTACTACCCATCCACCGCTCTCCACCGCTTCGCCGGTGGTTTCGGTGGCCTCCGTGTCAACAGCCGTCTCCTCATCCCAGTCCCATACGCTGACCCCGAAGACGACCGCACCATCCTCATCAACGACTGGTACGCCAAGAGCCACACCGCCCTCAAGAACTTCCTTGACAGCGGACGTACTCTAGGATCCCCCGACGGTGTTCTCATCAATGGGAAATCTGGTAAACTAGGCGGAAACAACGCTCCTCTCTTCACCATGAAGCCCGGAAAGACTTACAAGTACAGGATCTGCAATGTTGGATTCAAATCCACTCTTAACTTCAGGATCCAAGGACACAAGATGAAGCTTGTTGAGATGGAAGGCTCCCACGTTCTCCAGAACGACTACGACTCTCTTGATGTCCACGTTGGACAGTGCTTCGCCGTTCTAGTGACCGCTGACCAAGTGGCCAAGAACTACTACATGGTTGCATCCACTAGGTTCCTCAAGAAGGAAGTGAGCACTGTTGGTGTGATGAGCTACGAAGGAAGCAACGTTCAGGCTTCAAGCGATATCCCCAAGGCTCCCGTCGGCTGGGCTTGGTCTCTCAATCAGTTCAGATCCTTCAGATGGAACTTAACCGCCAGTGCTGCTAGACCTAACCCCCAGGGATCTTACCATTACGGAAAGATCAACATCACCCGTACCATCAAGCTCGCCAACACCAAGAATTTGGTGAATGGAAAGGTCAGGTTTGGATTCAACGGTGTATCACACGTTGACACCGAGACTCCCTTGAAGCTCGCTGAGTACTTCGGCATGTCCGAGAAGGTCTTCAAATACAACGTCATCAAGGACGAACCAGCAGCCAAGATCACAACACTAACCGTCGAGCCCAATGTCCTCAACATCACTTTCCGTACCTTTGTCGAAGTCGTCTTCGAGAACCACGAGAAAAGCATGCAATCCTTCCATTTGGACGGTTACTCCTTCTTCGCTGTCGCTTCCGAGCCAGGAAGATGGACACCAGAGAAGAGAAACAACTACAACTTGCTCGATGCCGTTAGCAGACACACCGTGCAGGTATACCCCAAATCCTGGTCAGCCATTCTCTTGACATTCGACAATGCCGGTATGTGGAACATCAGATCAGAGAACTGGGAGAGAAGATACTTGGGCCAGCAATTGTACGTCAGTGTTCTGTCCCCTGAAAAATCACTAAGAGACGAGTACAACATCCCACTCAACACCAACCTTTGCGGCATCGTCAAGGGCTTGCCATTACCTACACCCTACACTATTTAAACTCACTTCGACAAAGTTTTTTCAATTTATATGTAAAATTCTACTTTCCAAGTGAGTGTATTACGTGATTAATTAACCCTTTCCTAATTTCATTTAAAATACTACATATACTATCATTTAACT - >AT3G13400.2
CTTCTTTAGAGACATGTCCAATAATAGAATAAGATCCGAGTTGTGTGCTCGTTAGAGAAATCGGGAGTCCTAAGGACCAGCGAGCGAGAGAGATTCAAAAATAGAAATTTCACGTAAAGAGAATTAGAGGTGCAGCGTGAAAAGAGGCAACAATTCCGTGCATACCAAGGTCCTTCACCTGCATAAATAGAAAAGAGATAATGCAGGGTGGTAGGCTTTTGACGGTGTTGGTGTGCCTCGCCTCCACGGTGGCGTTGGTGAGCGCCGGTGACCCTTACTTCTACTACACGTGGAACGTAACCTACGGAACCGCCGCGCCTCTCGGAATTCCTCAACAGGTGATTCTCATCAACGGACAGTTCCCTGGTCCTAACCTAAACTCAACCTCCAACAACAATGTCGTCATCAATGTCTTCAACAACCTCGACGAGCCTTTCCTCTTGACCTGGAGTGGACTCCAGCACAGGAAGAACTCATGGCAAGATGGTGTGACTGGGACCTCATGCCCAATCCCAGCAGGCACCAACTTCACTTACCATTTCCAGCCTAAGGACCAGATCGGTAGCTACTTCTACTACCCATCCACCGCTCTCCACCGCTTCGCCGGTGGTTTCGGTGGCCTCCGTGTCAACAGCCGTCTCCTCATCCCAGTCCCATACGCTGACCCCGAAGACGACCGCACCATCCTCATCAACGACTGGTACGCCAAGAGCCACACCGCCCTCAAGAACTTCCTTGACAGCGGACGTACTCTAGGATCCCCCGACGGTGTTCTCATCAATGGGAAATCTGGTAAACTAGGCGGAAACAACGCTCCTCTCTTCACCATGAAGCCCGGAAAGACTTACAAGTACAGGATCTGCAATGTTGGATTCAAATCCACTCTTAACTTCAGGATCCAAGGACACAAGATGAAGCTTGTTGAGATGGAAGGCTCCCACGTTCTCCAGAACGACTACGACTCTCTTGATGTCCACGTTGGACAGTGCTTCGCCGTTCTAGTGACCGCTGACCAAGTGGCCAAGAACTACTACATGGTTGCATCCACTAGGTTCCTCAAGAAGGAAGTGAGCACTGTTGGTGTGATGAGCTACGAAGGAAGCAACGTTCAGGCTTCAAGCGATATCCCCAAGGCTCCCGTCGGCTGGGCTTGGTCTCTCAATCAGTTCAGATCCTTCAGATGGAACTTAACCGCCAGTGCTGCTAGACCTAACCCCCAGGGATCTTACCATTACGGAAAGATCAACATCACCCGTACCATCAAGCTCGCCAACACCAAGAATTTGGTGAATGGAAAGGTCAGGTTTGGATTCAACGGTGTATCACACGTTGACACCGAGACTCCCTTGAAGCTCGCTGAGTACTTCGGCATGTCCGAGAAGGTCTTCAAATACAACGTCATCAAGGACGAACCAGCAGCCAAGATCACAACACTAACCGTCGAGCCCAATGTCCTCAACATCACTTTCCGTACCTTTGTCGAAGTCGTCTTCGAGAACCACGAGAAAAGCATGCAATCCTTCCATTTGGACGGTTACTCCTTCTTCGCTGTCGCTTCCGAGCCAGGAAGATGGACACCAGAGAAGAGAAACAACTACAACTTGCTCGATGCCGTTAGCAGACACACCGTGCAGGTATACCCCAAATCCTGGTCAGCCATTCTCTTGACATTCGACAATGCCGGTATGTGGAACATCAGATCAGAGAACTGGGAGAGAAGATACTTGGGCCAGCAATTGTACGTCAGTGTTCTGTCCCCTGAAAAATCACTAAGAGACGAGTACAACATCCCACTCAACACCAACCTTTGCGGCATCGTCAAGGGCTTGCCATTACCTACACCCTACACTATTTAAACTCACTTCGACAAAGTTTTTTCAATTTATATGTAAAATTCTACTTTCCAAGTGAGTGTATTACGTGATTAATTAACCCTTTCCTAATTTCATTTAAAATACTACATATACTATCATTTAACT
CDS Sequence
- >AT3G13400.1
ATGCAGGGTGGTAGGCTTTTGACGGTGTTGGTGTGCCTCGCCTCCACGGTGGCGTTGGTGAGCGCCGGTGACCCTTACTTCTACTACACGTGGAACGTAACCTACGGAACCGCCGCGCCTCTCGGAATTCCTCAACAGGTGATTCTCATCAACGGACAGTTCCCTGGTCCTAACCTAAACTCAACCTCCAACAACAATGTCGTCATCAATGTCTTCAACAACCTCGACGAGCCTTTCCTCTTGACCTGGAGTGGACTCCAGCACAGGAAGAACTCATGGCAAGATGGTGTGACTGGGACCTCATGCCCAATCCCAGCAGGCACCAACTTCACTTACCATTTCCAGCCTAAGGACCAGATCGGTAGCTACTTCTACTACCCATCCACCGCTCTCCACCGCTTCGCCGGTGGTTTCGGTGGCCTCCGTGTCAACAGCCGTCTCCTCATCCCAGTCCCATACGCTGACCCCGAAGACGACCGCACCATCCTCATCAACGACTGGTACGCCAAGAGCCACACCGCCCTCAAGAACTTCCTTGACAGCGGACGTACTCTAGGATCCCCCGACGGTGTTCTCATCAATGGGAAATCTGGTAAACTAGGCGGAAACAACGCTCCTCTCTTCACCATGAAGCCCGGAAAGACTTACAAGTACAGGATCTGCAATGTTGGATTCAAATCCACTCTTAACTTCAGGATCCAAGGACACAAGATGAAGCTTGTTGAGATGGAAGGCTCCCACGTTCTCCAGAACGACTACGACTCTCTTGATGTCCACGTTGGACAGTGCTTCGCCGTTCTAGTGACCGCTGACCAAGTGGCCAAGAACTACTACATGGTTGCATCCACTAGGTTCCTCAAGAAGGAAGTGAGCACTGTTGGTGTGATGAGCTACGAAGGAAGCAACGTTCAGGCTTCAAGCGATATCCCCAAGGCTCCCGTCGGCTGGGCTTGGTCTCTCAATCAGTTCAGATCCTTCAGATGGAACTTAACCGCCAGTGCTGCTAGACCTAACCCCCAGGGATCTTACCATTACGGAAAGATCAACATCACCCGTACCATCAAGCTCGCCAACACCAAGAATTTGGTGAATGGAAAGGTCAGGTTTGGATTCAACGGTGTATCACACGTTGACACCGAGACTCCCTTGAAGCTCGCTGAGTACTTCGGCATGTCCGAGAAGGTCTTCAAATACAACGTCATCAAGGACGAACCAGCAGCCAAGATCACAACACTAACCGTCGAGCCCAATGTCCTCAACATCACTTTCCGTACCTTTGTCGAAGTCGTCTTCGAGAACCACGAGAAAAGCATGCAATCCTTCCATTTGGACGGTTACTCCTTCTTCGCTGTCGCTTCCGAGCCAGGAAGATGGACACCAGAGAAGAGAAACAACTACAACTTGCTCGATGCCGTTAGCAGACACACCGTGCAGGTATACCCCAAATCCTGGTCAGCCATTCTCTTGACATTCGACAATGCCGGTATGTGGAACATCAGATCAGAGAACTGGGAGAGAAGATACTTGGGCCAGCAATTGTACGTCAGTGTTCTGTCCCCTGAAAAATCACTAAGAGACGAGTACAACATCCCACTCAACACCAACCTTTGCGGCATCGTCAAGGGCTTGCCATTACCTACACCCTACACTATTTAA - >AT3G13400.2
ATGCAGGGTGGTAGGCTTTTGACGGTGTTGGTGTGCCTCGCCTCCACGGTGGCGTTGGTGAGCGCCGGTGACCCTTACTTCTACTACACGTGGAACGTAACCTACGGAACCGCCGCGCCTCTCGGAATTCCTCAACAGGTGATTCTCATCAACGGACAGTTCCCTGGTCCTAACCTAAACTCAACCTCCAACAACAATGTCGTCATCAATGTCTTCAACAACCTCGACGAGCCTTTCCTCTTGACCTGGAGTGGACTCCAGCACAGGAAGAACTCATGGCAAGATGGTGTGACTGGGACCTCATGCCCAATCCCAGCAGGCACCAACTTCACTTACCATTTCCAGCCTAAGGACCAGATCGGTAGCTACTTCTACTACCCATCCACCGCTCTCCACCGCTTCGCCGGTGGTTTCGGTGGCCTCCGTGTCAACAGCCGTCTCCTCATCCCAGTCCCATACGCTGACCCCGAAGACGACCGCACCATCCTCATCAACGACTGGTACGCCAAGAGCCACACCGCCCTCAAGAACTTCCTTGACAGCGGACGTACTCTAGGATCCCCCGACGGTGTTCTCATCAATGGGAAATCTGGTAAACTAGGCGGAAACAACGCTCCTCTCTTCACCATGAAGCCCGGAAAGACTTACAAGTACAGGATCTGCAATGTTGGATTCAAATCCACTCTTAACTTCAGGATCCAAGGACACAAGATGAAGCTTGTTGAGATGGAAGGCTCCCACGTTCTCCAGAACGACTACGACTCTCTTGATGTCCACGTTGGACAGTGCTTCGCCGTTCTAGTGACCGCTGACCAAGTGGCCAAGAACTACTACATGGTTGCATCCACTAGGTTCCTCAAGAAGGAAGTGAGCACTGTTGGTGTGATGAGCTACGAAGGAAGCAACGTTCAGGCTTCAAGCGATATCCCCAAGGCTCCCGTCGGCTGGGCTTGGTCTCTCAATCAGTTCAGATCCTTCAGATGGAACTTAACCGCCAGTGCTGCTAGACCTAACCCCCAGGGATCTTACCATTACGGAAAGATCAACATCACCCGTACCATCAAGCTCGCCAACACCAAGAATTTGGTGAATGGAAAGGTCAGGTTTGGATTCAACGGTGTATCACACGTTGACACCGAGACTCCCTTGAAGCTCGCTGAGTACTTCGGCATGTCCGAGAAGGTCTTCAAATACAACGTCATCAAGGACGAACCAGCAGCCAAGATCACAACACTAACCGTCGAGCCCAATGTCCTCAACATCACTTTCCGTACCTTTGTCGAAGTCGTCTTCGAGAACCACGAGAAAAGCATGCAATCCTTCCATTTGGACGGTTACTCCTTCTTCGCTGTCGCTTCCGAGCCAGGAAGATGGACACCAGAGAAGAGAAACAACTACAACTTGCTCGATGCCGTTAGCAGACACACCGTGCAGGTATACCCCAAATCCTGGTCAGCCATTCTCTTGACATTCGACAATGCCGGTATGTGGAACATCAGATCAGAGAACTGGGAGAGAAGATACTTGGGCCAGCAATTGTACGTCAGTGTTCTGTCCCCTGAAAAATCACTAAGAGACGAGTACAACATCCCACTCAACACCAACCTTTGCGGCATCGTCAAGGGCTTGCCATTACCTACACCCTACACTATTTAA
Protein Sequence
- >AT3G13400.1
MQGGRLLTVLVCLASTVALVSAGDPYFYYTWNVTYGTAAPLGIPQQVILINGQFPGPNLNSTSNNNVVINVFNNLDEPFLLTWSGLQHRKNSWQDGVTGTSCPIPAGTNFTYHFQPKDQIGSYFYYPSTALHRFAGGFGGLRVNSRLLIPVPYADPEDDRTILINDWYAKSHTALKNFLDSGRTLGSPDGVLINGKSGKLGGNNAPLFTMKPGKTYKYRICNVGFKSTLNFRIQGHKMKLVEMEGSHVLQNDYDSLDVHVGQCFAVLVTADQVAKNYYMVASTRFLKKEVSTVGVMSYEGSNVQASSDIPKAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLANTKNLVNGKVRFGFNGVSHVDTETPLKLAEYFGMSEKVFKYNVIKDEPAAKITTLTVEPNVLNITFRTFVEVVFENHEKSMQSFHLDGYSFFAVASEPGRWTPEKRNNYNLLDAVSRHTVQVYPKSWSAILLTFDNAGMWNIRSENWERRYLGQQLYVSVLSPEKSLRDEYNIPLNTNLCGIVKGLPLPTPYTI - >AT3G13400.2
MQGGRLLTVLVCLASTVALVSAGDPYFYYTWNVTYGTAAPLGIPQQVILINGQFPGPNLNSTSNNNVVINVFNNLDEPFLLTWSGLQHRKNSWQDGVTGTSCPIPAGTNFTYHFQPKDQIGSYFYYPSTALHRFAGGFGGLRVNSRLLIPVPYADPEDDRTILINDWYAKSHTALKNFLDSGRTLGSPDGVLINGKSGKLGGNNAPLFTMKPGKTYKYRICNVGFKSTLNFRIQGHKMKLVEMEGSHVLQNDYDSLDVHVGQCFAVLVTADQVAKNYYMVASTRFLKKEVSTVGVMSYEGSNVQASSDIPKAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLANTKNLVNGKVRFGFNGVSHVDTETPLKLAEYFGMSEKVFKYNVIKDEPAAKITTLTVEPNVLNITFRTFVEVVFENHEKSMQSFHLDGYSFFAVASEPGRWTPEKRNNYNLLDAVSRHTVQVYPKSWSAILLTFDNAGMWNIRSENWERRYLGQQLYVSVLSPEKSLRDEYNIPLNTNLCGIVKGLPLPTPYTI