Gene Details:
- Gene ID: AT3G13290
- Gene Symbol: VCR
- Gene Name: varicose-related
- Description: varicose-like protein;(source:Araport11)
- TAIR Accession:
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Germplasm Phenotype:
- VCR:vcr — The siliques of self-pollinated heterozygous plants were examined. Dissected siliques showed a full seed set, indicating that the loss of VCR did not affect female gametophyte or embryo development.
- vcr — No visible phenotype.
Literature:
- VARICOSE, a WD-domain protein, is required for leaf blade development. DOI: 10.1242/dev.00909 ; PMID: 14660546
- Components of the Arabidopsis mRNA decapping complex are required for early seedling development. DOI: 10.1105/tpc.106.047621 ; PMID: 17513503
- Contrasting patterns of transposable-element insertion polymorphism and nucleotide diversity in autotetraploid and allotetraploid Arabidopsis species. DOI: 10.1534/genetics.107.085761 ; PMID: 18493073
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- SnRK2 Protein Kinases and mRNA Decapping Machinery Control Root Development and Response to Salt. DOI: 10.1104/pp.19.00818 ; PMID: 31570508
- A NYN domain protein directly interacts with DECAPPING1 and is required for phyllotactic pattern. DOI: 10.1093/plphys/kiab529 ; PMID: 34791434
- Components of the Arabidopsis mRNA decapping complex are required for early seedling development. DOI: 10.1105/tpc.106.047621 ; PMID: 17513503
Sequences:
cDNA Sequence
- >AT3G13290.1
CAGATTTACGCCCCACTATCGAAAACGCAAGTCTACAAAACTTCTTTAGCTGTTCTCTCACTCCTTTCAAGTCATCATCGTCTATCTCTACTCGCTTTTCGCGCTTCCCCTCTCTACGTGACTTTTGATTTCTTCTTCAGATCCGCCGAGTCTTCTTTTTCTGAAATATATTCACGAACCTTCACATTCAAATTACACTTGTCTATTGATCGATATCGCAAACCCTAGATTCGGCGATCGTAAATCAATGGCGTCTTCACCTGGTAACACTAACCCTCACAATCCTCCGCCGTTCGATCTCGGTACTATCTTCAAACCCTCATCCAACCCTTATCCTCCCCCTACAGGTCCGTTTCTTAACAACCAGTACAATCAGCAACTATACGCGCCGCCTGGTATCGCCGCCCAACCATCTCCGGTGAATCAAACGCAACAGGATGTGTCTTCCTCTTCCTCCGCTACTAACTTGCAACCACAGAGAACGCTATCTTATCCCACGCCACCTCTCAATCCCCAATCTCCCCGTGTCAATCACAATCCGGGAACGCACATCCTCGCTCTCCTCAACAACGGAGGTGCCGTGGCGAACCAAGAGCCGTCGCATCACAACGAGATCGCTCGAGCTTTTCCCGGCGGTTCGGGTCCTATTCATGTTCCAAGCGGTAAAATGCCCAAGGGAAGGCGATTGGTTGGTGAACATGCGGTGTATGATGTTGATGTGAGATTACAGGGAGAGATTCAACCGCAGCTGGAGGTGACTCCGATTACCAAGTACGGCTCGGATCCTCAGCTTGTACTCGGTAGGCAAATTGCTGTGAATAAGGTCTACATTTGCTATGGATTGAAAGGAGGAAGCATTCGTGTTCTCAATATCAACACAGCATTGAGGTCTCTGTTCCGTGGCCATTCTCAGAGAGTAACGGACATGGCTTTCTTTGCCGAAGATGTTCATCTCTTAGCTAGTGTTAGTCTAGATGGAAAAGTTTTTGTGTGGAAAATTTCCGAAGGATCTGAGGGAGATGAACAATCCCAGATAACTGGAAAGATAGTTGTTGCTCTTCAGATACTTGGAGAGGAAGACACCAAACATCCACGTGTCTGTTGGCACTGCCACAAACAGGAAATTTTGGTAGTTTCAATTGGTAAACATGTGCTGCGAATCGATACTACAAAAGTTGGCAGAGGTGAAGTGTTCTCTGCCGAGGCACCTCTCCAGTGTCATCTTGATAAACTAATTGATGGTGTTCAGATTGTGGGTAAGCATGATGGAGAAGTGACAGATTTGTCAATGTGCCAATGGATGACCACGCGCCTGGTTTCTTCTTCAGTTGATGGCACGGTTAAGATATGGCAAGATCGTAAGACACAACCACTTGTAGTATTGAGACCTCATGATGGACTTCCAGTCAATTCTGCCATATTTGTGACATCCCCGGAAAGACCTGATCACATCATACTTATCACGGGGGGTCCTCTAAATCGAGAAATCAAGATTTGGGTCTCCGCTGGGGAAGAAGGGTGGCTTCTACCCGCTGATACTGAATCGTGGAGATGTACCCAGACACTTGATTTGAAAAGTTCAACTGAGCCACAAGCTGAAAAGGCATTTTTCAACCAAGTCATAGCATTGTCTGAAGCAGGCCTGCTTTTGCTTGCAAATGCGAGAAGGAACGCCATATATTCCGTGCATTTGGACTATGGCTCATCTCCAGTGGAAACGCTGATGGATTACTTGTCCGAGTTTACAGTCACTATGCCTATATTGAGTTTTATTGGGACAAATGATCACCCAGAAGAACCATTTGTTAAAGTGTATTGTGTTCAGACTCTAGCAATCCAGCAGTATACATTAGACTTATTCTTGTGCATGCCACCTCCAAGAGAGAATGTGGGTTTTGAGAAGTCAGATTCTACTGTGTCACGGGAGGCAAACCTTGTTGAAAGCACGTTAGAAACATCTGGAATGAAGCCTACCGAATTACCTTCAGTTGGTTCAGTGCCTAAACCATCTATTTTAGTGAATAGATCGGAAAATGCTAATATGTTGAGTTTTCCAGCGGGCCCTGCATCAGCGGGGATCACACCACCAGCAATTGTTCCACCCAACGGTGAGCCTAAAACTTCTGGGATGCCTTCTGAGACCAGTGATGTAGATTCTGCGTATGCTCCTTCACCTCAACTTCCTCTAAGCCCCAGACTATCAAGTAAACTTTCTGGCTATCACACTCCTGTAGAAGCGTTTGAGCAAGTGCTACCACATCATAAGCTTGGTGGCAAAACAAGTTCTGCTGATTATTTTTATGTGAGGCAAACTGATGATGTTGGAGGAAGAAATTTGGATGTGTCTTCTGTCGAGGAAAACTGTAGAAGCAAGGACACGAATGTTACACCTGATGATGATGTGTCTGGGATTCGAAGCCCGTCAGCTTTTTTCAAACAGCCCACTCATCTCGTAACTCCTTCAGAGATATTGATGGGCGTTTCTTCCACTGAAGCCTCCATTACTACTGAAGACAAGAGGGATAGAGATGCAAATATTGAGGAAGTGAATAATGATGCAAGAGGCTTAGAAGTTGAGTTGAAAGAAGTAGGCGAAGCACAGACTTCGCAGAATGGTGAAATTAACTATCACGAAACAACTGAGAATCACACTTCAGAAAGTAGAGAAAATATCTTCTGCTCACAGGCTTCAAATCTCAGCACTGAGATGGCAAGAGACCGTCATCCTATTACAGAGGGAAGTGCCATTCCTGGGGATTCTATGGCTTATGGACAACCTTTACAAGCTGGAGATGAAAGGGGTCTTGACTCAAGAGATGTCTCTGCAAAGCTTCCTGAGTCGGGTTCATCTAGTGGGTTAGTAGCTACAAATAGCAAAGGAAAGAAGCAGAAGGCGAAAAATTCACAGGGTCCTGGGTTGTCATCTACATCCTCAAATGTTGCTAATCTGGCTGACTCCTTCAATGAGCAAAGTCAGAGTTTAAATCATCCCATGGCAGATTTACTTCCTCAGTTGTTAGCATTGCAAGAAACAATGACTCAGGTAATGGCTTCGCAGAAGGAGATGCAGAGACAACTATCAAATGCTGTCACTGGCCCTATCGTAAAAGAAGGTAAAAAACTAGAAGTTGCCTTAGGGAGAATGATTGAGAAATCCAGCAAGTCAAATGCTGATGCTCTATGGGCCCACTTCCAAGAGGAGGCTGTTAAGAATGAAAAGGCATTACGTGACCATGGCCAGCAAATTATGAATGAAACGACAAACTTCACGAGTAAAGAGTTAAATGCCATGTTTGAGAAAACGATGAAGAAGGAATTTGCTTCAGTTGGTCCAACCCTAGCACGTGTAGTAACTCCAGTTATTGAAAAAACTGTATCTTCTGCAATCACAGAGTCCTTCCAGAGAGGAATTGGTGACAAAGCAGTCAATCAGCTTGAAAAATCTGTTAATTCAAAGCTTGAAACAACCGTAGCCAGGCAGATTCAAGCCCAATTTCAGACATCTGGCAGACAAGTCCTGCAGGAAGGTCTTAGGTCAAGTATGGAGTCCTCAGTCATACCTTCCTTTGAGAGGTCATGCAAAACCATGTTTGAGCAAGTAGACTCAACCTTACAGAAAGGAATTGGTAAGCACACGAGCGCAACACAGCAACGGATTGACTCTGGACAATCTCAGCTTGCTCATACTCTGAGGGAAACCATTAGTTCTGCATCATCAGTTACTCAAGCCCTAAATCGTGAATTAGCCGAGAGTCAAAGGAATCGCTTAGCTCTCACAGCTGCTGGATCAAATCCCTTGGTTACTCAACTAAGTAACGGGCCTTTAGGTGCTCTTCTTGAAAAGGTTGAAGCACCTATGGACCCAACAACAGAGCTATCAAGGTTGATATCTGAACGCAAGTACGAAGAATCTTTCACATCAGCTCTACAAAGAAGCGATGTCTCTATAGTATCATGGCTTTGCTCACAGGTGGATCTTCGTGGACTACTGGCGATGAATCCGCTTCCGCTGAGCCAAGGTGTGCTTCTTTCACTGCTGCAGCAGTTAGCTTGTGACATAAGCACGGACACATCCCGTAAGCTAGGTTGGATGACTGATGTGGTTACAGCCATAAACCCATCAGATCAGATGATAGCGGTCCATGCTCGCCCAATCTTTGAACAAGTTTATCAGATTTTGCACCATCACCGTAACGCACCAGGCAGCGACGTCTCTGCCGTCAGACTAATAATGCACGTCATCAACTCTTTACTTATGAGCTGCAAATGACATCTCGCTCTCTCTGTTTCTTCTTGTTAGTTACATGCATAAAACATAGGAAACCTCTCTTCTCTGTATTTCTCTCTCTACTCTAGTTAGATTTTTTTTGGTTACCCATTAGTTCAATTTCCTTTAACTGTAAACATCTGGTTGGTTCTACGTCTATAATGTTCCCTTTTTCTTCTCCGAGAGAATGAGTTTGCTAGGATCTGGAAAACCCTGAGAAAACATGAAGATCATGTATGGGCAGGGTATACTGATTTTCTAATGAAATTGGTTTTGAAGTAACTACAAGTTACCTGCAGAATAGACAGATGAGTTTGAAGACATTATGGGAATCTGGTGTGGCAGTAAGCAGAGAATTTGTCAAAATTGAGCAATTGCAATAAAAAATCTTTTTCTTTACTTTTGAGTTCAGTTGATCAGTTTTTGGATTGAAGGGTATTTGCTGTTGGGTTCGGTTGCCTTTACTTGCATGTGAGCTCAGCTGACCATGAATTCAGAATCCTTGTCATCTTCTTCTCTTTTGT
CDS Sequence
- >AT3G13290.1
ATGGCGTCTTCACCTGGTAACACTAACCCTCACAATCCTCCGCCGTTCGATCTCGGTACTATCTTCAAACCCTCATCCAACCCTTATCCTCCCCCTACAGGTCCGTTTCTTAACAACCAGTACAATCAGCAACTATACGCGCCGCCTGGTATCGCCGCCCAACCATCTCCGGTGAATCAAACGCAACAGGATGTGTCTTCCTCTTCCTCCGCTACTAACTTGCAACCACAGAGAACGCTATCTTATCCCACGCCACCTCTCAATCCCCAATCTCCCCGTGTCAATCACAATCCGGGAACGCACATCCTCGCTCTCCTCAACAACGGAGGTGCCGTGGCGAACCAAGAGCCGTCGCATCACAACGAGATCGCTCGAGCTTTTCCCGGCGGTTCGGGTCCTATTCATGTTCCAAGCGGTAAAATGCCCAAGGGAAGGCGATTGGTTGGTGAACATGCGGTGTATGATGTTGATGTGAGATTACAGGGAGAGATTCAACCGCAGCTGGAGGTGACTCCGATTACCAAGTACGGCTCGGATCCTCAGCTTGTACTCGGTAGGCAAATTGCTGTGAATAAGGTCTACATTTGCTATGGATTGAAAGGAGGAAGCATTCGTGTTCTCAATATCAACACAGCATTGAGGTCTCTGTTCCGTGGCCATTCTCAGAGAGTAACGGACATGGCTTTCTTTGCCGAAGATGTTCATCTCTTAGCTAGTGTTAGTCTAGATGGAAAAGTTTTTGTGTGGAAAATTTCCGAAGGATCTGAGGGAGATGAACAATCCCAGATAACTGGAAAGATAGTTGTTGCTCTTCAGATACTTGGAGAGGAAGACACCAAACATCCACGTGTCTGTTGGCACTGCCACAAACAGGAAATTTTGGTAGTTTCAATTGGTAAACATGTGCTGCGAATCGATACTACAAAAGTTGGCAGAGGTGAAGTGTTCTCTGCCGAGGCACCTCTCCAGTGTCATCTTGATAAACTAATTGATGGTGTTCAGATTGTGGGTAAGCATGATGGAGAAGTGACAGATTTGTCAATGTGCCAATGGATGACCACGCGCCTGGTTTCTTCTTCAGTTGATGGCACGGTTAAGATATGGCAAGATCGTAAGACACAACCACTTGTAGTATTGAGACCTCATGATGGACTTCCAGTCAATTCTGCCATATTTGTGACATCCCCGGAAAGACCTGATCACATCATACTTATCACGGGGGGTCCTCTAAATCGAGAAATCAAGATTTGGGTCTCCGCTGGGGAAGAAGGGTGGCTTCTACCCGCTGATACTGAATCGTGGAGATGTACCCAGACACTTGATTTGAAAAGTTCAACTGAGCCACAAGCTGAAAAGGCATTTTTCAACCAAGTCATAGCATTGTCTGAAGCAGGCCTGCTTTTGCTTGCAAATGCGAGAAGGAACGCCATATATTCCGTGCATTTGGACTATGGCTCATCTCCAGTGGAAACGCTGATGGATTACTTGTCCGAGTTTACAGTCACTATGCCTATATTGAGTTTTATTGGGACAAATGATCACCCAGAAGAACCATTTGTTAAAGTGTATTGTGTTCAGACTCTAGCAATCCAGCAGTATACATTAGACTTATTCTTGTGCATGCCACCTCCAAGAGAGAATGTGGGTTTTGAGAAGTCAGATTCTACTGTGTCACGGGAGGCAAACCTTGTTGAAAGCACGTTAGAAACATCTGGAATGAAGCCTACCGAATTACCTTCAGTTGGTTCAGTGCCTAAACCATCTATTTTAGTGAATAGATCGGAAAATGCTAATATGTTGAGTTTTCCAGCGGGCCCTGCATCAGCGGGGATCACACCACCAGCAATTGTTCCACCCAACGGTGAGCCTAAAACTTCTGGGATGCCTTCTGAGACCAGTGATGTAGATTCTGCGTATGCTCCTTCACCTCAACTTCCTCTAAGCCCCAGACTATCAAGTAAACTTTCTGGCTATCACACTCCTGTAGAAGCGTTTGAGCAAGTGCTACCACATCATAAGCTTGGTGGCAAAACAAGTTCTGCTGATTATTTTTATGTGAGGCAAACTGATGATGTTGGAGGAAGAAATTTGGATGTGTCTTCTGTCGAGGAAAACTGTAGAAGCAAGGACACGAATGTTACACCTGATGATGATGTGTCTGGGATTCGAAGCCCGTCAGCTTTTTTCAAACAGCCCACTCATCTCGTAACTCCTTCAGAGATATTGATGGGCGTTTCTTCCACTGAAGCCTCCATTACTACTGAAGACAAGAGGGATAGAGATGCAAATATTGAGGAAGTGAATAATGATGCAAGAGGCTTAGAAGTTGAGTTGAAAGAAGTAGGCGAAGCACAGACTTCGCAGAATGGTGAAATTAACTATCACGAAACAACTGAGAATCACACTTCAGAAAGTAGAGAAAATATCTTCTGCTCACAGGCTTCAAATCTCAGCACTGAGATGGCAAGAGACCGTCATCCTATTACAGAGGGAAGTGCCATTCCTGGGGATTCTATGGCTTATGGACAACCTTTACAAGCTGGAGATGAAAGGGGTCTTGACTCAAGAGATGTCTCTGCAAAGCTTCCTGAGTCGGGTTCATCTAGTGGGTTAGTAGCTACAAATAGCAAAGGAAAGAAGCAGAAGGCGAAAAATTCACAGGGTCCTGGGTTGTCATCTACATCCTCAAATGTTGCTAATCTGGCTGACTCCTTCAATGAGCAAAGTCAGAGTTTAAATCATCCCATGGCAGATTTACTTCCTCAGTTGTTAGCATTGCAAGAAACAATGACTCAGGTAATGGCTTCGCAGAAGGAGATGCAGAGACAACTATCAAATGCTGTCACTGGCCCTATCGTAAAAGAAGGTAAAAAACTAGAAGTTGCCTTAGGGAGAATGATTGAGAAATCCAGCAAGTCAAATGCTGATGCTCTATGGGCCCACTTCCAAGAGGAGGCTGTTAAGAATGAAAAGGCATTACGTGACCATGGCCAGCAAATTATGAATGAAACGACAAACTTCACGAGTAAAGAGTTAAATGCCATGTTTGAGAAAACGATGAAGAAGGAATTTGCTTCAGTTGGTCCAACCCTAGCACGTGTAGTAACTCCAGTTATTGAAAAAACTGTATCTTCTGCAATCACAGAGTCCTTCCAGAGAGGAATTGGTGACAAAGCAGTCAATCAGCTTGAAAAATCTGTTAATTCAAAGCTTGAAACAACCGTAGCCAGGCAGATTCAAGCCCAATTTCAGACATCTGGCAGACAAGTCCTGCAGGAAGGTCTTAGGTCAAGTATGGAGTCCTCAGTCATACCTTCCTTTGAGAGGTCATGCAAAACCATGTTTGAGCAAGTAGACTCAACCTTACAGAAAGGAATTGGTAAGCACACGAGCGCAACACAGCAACGGATTGACTCTGGACAATCTCAGCTTGCTCATACTCTGAGGGAAACCATTAGTTCTGCATCATCAGTTACTCAAGCCCTAAATCGTGAATTAGCCGAGAGTCAAAGGAATCGCTTAGCTCTCACAGCTGCTGGATCAAATCCCTTGGTTACTCAACTAAGTAACGGGCCTTTAGGTGCTCTTCTTGAAAAGGTTGAAGCACCTATGGACCCAACAACAGAGCTATCAAGGTTGATATCTGAACGCAAGTACGAAGAATCTTTCACATCAGCTCTACAAAGAAGCGATGTCTCTATAGTATCATGGCTTTGCTCACAGGTGGATCTTCGTGGACTACTGGCGATGAATCCGCTTCCGCTGAGCCAAGGTGTGCTTCTTTCACTGCTGCAGCAGTTAGCTTGTGACATAAGCACGGACACATCCCGTAAGCTAGGTTGGATGACTGATGTGGTTACAGCCATAAACCCATCAGATCAGATGATAGCGGTCCATGCTCGCCCAATCTTTGAACAAGTTTATCAGATTTTGCACCATCACCGTAACGCACCAGGCAGCGACGTCTCTGCCGTCAGACTAATAATGCACGTCATCAACTCTTTACTTATGAGCTGCAAATGA
Protein Sequence
- >AT3G13290.1
MASSPGNTNPHNPPPFDLGTIFKPSSNPYPPPTGPFLNNQYNQQLYAPPGIAAQPSPVNQTQQDVSSSSSATNLQPQRTLSYPTPPLNPQSPRVNHNPGTHILALLNNGGAVANQEPSHHNEIARAFPGGSGPIHVPSGKMPKGRRLVGEHAVYDVDVRLQGEIQPQLEVTPITKYGSDPQLVLGRQIAVNKVYICYGLKGGSIRVLNINTALRSLFRGHSQRVTDMAFFAEDVHLLASVSLDGKVFVWKISEGSEGDEQSQITGKIVVALQILGEEDTKHPRVCWHCHKQEILVVSIGKHVLRIDTTKVGRGEVFSAEAPLQCHLDKLIDGVQIVGKHDGEVTDLSMCQWMTTRLVSSSVDGTVKIWQDRKTQPLVVLRPHDGLPVNSAIFVTSPERPDHIILITGGPLNREIKIWVSAGEEGWLLPADTESWRCTQTLDLKSSTEPQAEKAFFNQVIALSEAGLLLLANARRNAIYSVHLDYGSSPVETLMDYLSEFTVTMPILSFIGTNDHPEEPFVKVYCVQTLAIQQYTLDLFLCMPPPRENVGFEKSDSTVSREANLVESTLETSGMKPTELPSVGSVPKPSILVNRSENANMLSFPAGPASAGITPPAIVPPNGEPKTSGMPSETSDVDSAYAPSPQLPLSPRLSSKLSGYHTPVEAFEQVLPHHKLGGKTSSADYFYVRQTDDVGGRNLDVSSVEENCRSKDTNVTPDDDVSGIRSPSAFFKQPTHLVTPSEILMGVSSTEASITTEDKRDRDANIEEVNNDARGLEVELKEVGEAQTSQNGEINYHETTENHTSESRENIFCSQASNLSTEMARDRHPITEGSAIPGDSMAYGQPLQAGDERGLDSRDVSAKLPESGSSSGLVATNSKGKKQKAKNSQGPGLSSTSSNVANLADSFNEQSQSLNHPMADLLPQLLALQETMTQVMASQKEMQRQLSNAVTGPIVKEGKKLEVALGRMIEKSSKSNADALWAHFQEEAVKNEKALRDHGQQIMNETTNFTSKELNAMFEKTMKKEFASVGPTLARVVTPVIEKTVSSAITESFQRGIGDKAVNQLEKSVNSKLETTVARQIQAQFQTSGRQVLQEGLRSSMESSVIPSFERSCKTMFEQVDSTLQKGIGKHTSATQQRIDSGQSQLAHTLRETISSASSVTQALNRELAESQRNRLALTAAGSNPLVTQLSNGPLGALLEKVEAPMDPTTELSRLISERKYEESFTSALQRSDVSIVSWLCSQVDLRGLLAMNPLPLSQGVLLSLLQQLACDISTDTSRKLGWMTDVVTAINPSDQMIAVHARPIFEQVYQILHHHRNAPGSDVSAVRLIMHVINSLLMSCK