Information report for AT3G13120
Gene Details
|
|
Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Functional Keywords
Literature and News
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Comparative analysis of bacterial-origin genes for plant mitochondrial ribosomal proteins. DOI: 10.1093/molbev/msj080 ; PMID: 16368778
- Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes. DOI: 10.1186/1471-2164-9-113 ; PMID: 18315867
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- CHLOROPLAST RIBOSOME ASSOCIATED Supports Translation under Stress and Interacts with the Ribosomal 30S Subunit. DOI: 10.1104/pp.18.00602 ; PMID: 29914890
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- An updated nomenclature for plant ribosomal protein genes. DOI: 10.1093/plcell/koac333 ; PMID: 36423343
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
Gene Resources
- UniProt: A0A178V6X6
- EMBL: CACRSJ010000106, CACSHJ010000089, LR881468
- AlphaFoldDB: A0A178V6X6
- EnsemblPlants: AT3G13120.1, AT3G13120.2, AT3G13120.3
- Gramene: AT3G13120.1, AT3G13120.2, AT3G13120.3
- KEGG: ath:AT3G13120
- Orthologous matrix: GENFWIE
- ExpressionAtlas: AT3G13120
- InterPro: IPR001848, IPR018268, IPR027486
- PANTHER: PTHR11700
- SUPFAM: SSF54999
- PROSITE: PS00361
- Gene3D: 3.30.70.600
- OrthoDB: A0A178V6X6
- SWISS-MODEL: A0A178V6X6
Homologs
- Raphanus raphanistrum RrC831_p3
Sequences
cDNA Sequence
- >AT3G13120.1
AAAAGGTTTTGGATAAAATGGATAACCCTCAAGAAGAAGCTGCTGAAGAAGAAACCTCATCCTTCGAACGTTAAGAGGAAGAAGAATAAGAGAAATCGATTCGTGGTTTTGGGAAAATTCAATGGCGGTTTCTACTGTATCGTCGTTTCTATTGCCATCTTTCGGCATTCCAAGCTCTTCGCCTTCTTCTACCAGACTCAAAGTCTCTCTGCTGCCTTCATCTTCTACCCATGGCGGCCTTAGTTCCTGCGTCCTTACGAAACCATCCGTCTCGCTTACGAAGGTCTTCGCTGTTCCCGATACCCTAGATCCAACTCCAGAAATTCTCGATGAACCCGCCTCTGAGGTTCCGAGCTCTTCATCCATCAGTGTAGACGCGGATAAGATGGCGCCAAAGCAAAAGATTAGGATCAAGCTTAGATCATACTGGGTGCCTCTTATTGAGGACTCATGCAAGCAGATACTTGATGCTGCGAGAAACACCAATGCAAAGACGATGGGTCCTGTTCCATTGCCAACCAAGAAGCGTATCTACTGTGTTCTCAAGTCTCCTCACGTTCACAAGGATGCTAGGTTCCATTTTGAAATCCGGACACACCAGCGCATGATTGATATTCTCTACCCGACTGCTCAAACTATCGATTCTTTGATGCAACTTGATCTTCCTGCTGGTGTCGATGTGGAAGTGAAGCTCTGAAGAAGAAGCGTAACTACAATGATGTGATGGGCACTTTTGCATTGAATGAACAGACTGTTTCAGATCAACTACATTGCTTAGAACTGGTAAGCCTTGTATCATCTTTTTTGAGAACCTTTGTAACGAAAATGTAAGTTGTATTATCTGGTCCTTGGAATCTATCTTTAGCGATGCTTGGTTCTTAGTTGATGAACATATCCTTAATTAAGCAAGTTCAAAGGAATTTGTTTTTGTTTTACTAATTGTTATGCAGTTTGCCTGTGTCCATTATGATAAGTTTTTTTATTTTTGTTGTATTCAAAGTGGAATCTTTTTTTTGAATATAAGTATTATAGTAGTATTATAGTAGGAATAAGAAGATGCACAACTTGAGTTATTTTAAAACCAGGAGGTTGGAATCTTGAAAGCGACTTCATTATTATAATAAACGTATAAGTTCGTTTATCCACAAACTCAATAGGGAAATTATAATTTTTTGTCACAACACATTTCATTTATCAATTATCCTCTAGACTCAGTTCGTCTCTTTTCTTAGCAGCCAATTAAAACCTGCAAGTGTTGTTTTACCAGTCTTTCCTTTCCAAGCTTACGAAACGATCCAAGGGAAAAAACAGTAATGGTTTCGAATTTATGTCTGATAAGTCGATGGCGCTTTTTCTTATCTAATTTGGAATTTTGGATGATGCAGAAATTGTCAACCCCCCAATATTATAAAGTTGAAGAATATTCTTTTCCATGTTCAATCATACACACAACTATATCATTATTTTAATCATATGAAATGGTTTTTGGTATAGTAAGAAGTGGTTCAT - >AT3G13120.2
AAAAGGTTTTGGATAAAATGGATAACCCTCAAGAAGAAGCTGCTGAAGAAGAAACCTCATCCTTCGAACGTTAAGAGGAAGAAGAATAAGAGAAATCGATTCGTGGTTTTGGGAAAATTCAATGGCGGTTTCTACTGTATCGTCGTTTCTATTGCCATCTTTCGGCATTCCAAGCTCTTCGCCTTCTTCTACCAGACTCAAAGTCTCTCTGCTGCCTTCATCTTCTACCCATGGCGGCCTTAGTTCCTGCGTCCTTACGAAACCATCCGTCTCGCTTACGAAGGTCTTCGCTGTTCCCGATACCCTAGATCCAACTCCAGAAATTCTCGATGAACCCGCCTCTGAGGTTCCGAGCTCTTCATCCATCAGTGTAGACGCGGATAAGATGGCGCCAAAGCAAAAGATTAGGATCAAGCTTAGATCATACTGGGTGCCTCTTATTGAGGACTCATGCAAGCAGATACTTGATGCTGCGAGAAACACCAATGCAAAGACGATGGGTCCTGTTCCATTGCCAACCAAGAAGCGTATCTACTGTGTTCTCAAGTCTCCTCACGTTCACAAGGATGCTAGGTTCCATTTTGAAATCCGGACACACCAGCGCATGATTGATATTCTCTACCCGACTGCTCAAACTATCGATTCTTTGATGCAACTTGATCTTCCTGCTGGTGTCGATGTGGAAGTGAAGCTCTGAAGAAGAAGCGTAACTACAATGATGTGATGGGCACTTTTGCATTGAATGAACAGACTGTTTCAGATCAACTACATTGCTTAGAACTGGTAAGCCTTGTATCATCTTTTTTGAGAACCTTTGTAACGAAAATGTAAGTTGTATTATCTGGTCCTTGGAATCTATCTTTAGCGATGCTTGGTTCTTAGTTGATGAACATATCCTTAATTAAGCAAGTTCAAAGGAATTTGTTTTTGTTTTACTAATTGTTATGCAGTTTGCCTGTGTCCATTATGATAAGTTTTTTTATTTTTGTTGTATTCAAAGTGGAATCTTTTTTTTGAATATAAGTATTATAGTAGTATTATAGTAGGAATAAGAAGATGCACAACTTGAGTTATTTTAAAACCAGGAGGTTGGAATCTTGAAAGCGACTTCATTATTATAATAAACGTATAAGTTCGTTTATCCACAAACTCAATAGGGAAATTATAATTTTTTGTCACAACACATTTCATTTATCAATTATCCTCTAGACTCAGTTCGTCTCTTTTCTTAGCAGCCAATTAAAACCTGCAAGTGTTGTTTTACCAGTCTTTCCTTTCCAAGCTTACGAAACGATCCAAGGGAAAAAACAGTAATGGTTTCGAATTTATGTCTGATAAGTCGATGGCGCTTTTTCTTATCTAATTTGGAATTTTGGATGATGCAGAAATTGTCAACCCCCCAATATTATAAAGTTGAAGAATATTCTTTTCCATGTTCAATCATACACACAACTATATCATTATTTTAATCATATGAAATGGTTTTTGGTATAGTAAGAAGTGGTTCAT - >AT3G13120.3
AAAAGGTTTTGGATAAAATGGATAACCCTCAAGAAGAAGCTGCTGAAGAAGAAACCTCATCCTTCGAACGTTAAGAGGAAGAAGAATAAGAGAAATCGATTCGTGGTTTTGGGAAAATTCAATGGCGGTTTCTACTGTATCGTCGTTTCTATTGCCATCTTTCGGCATTCCAAGCTCTTCGCCTTCTTCTACCAGACTCAAAGTCTCTCTGCTGCCTTCATCTTCTACCCATGGCGGCCTTAGTTCCTGCGTCCTTACGAAACCATCCGTCTCGCTTACGAAGGTCTTCGCTGTTCCCGATACCCTAGATCCAACTCCAGAAATTCTCGATGAACCCGCCTCTGAGGTTCCGAGCTCTTCATCCATCAGTGTAGACGCGGATAAGATGGCGCCAAAGCAAAAGATTAGGATCAAGCTTAGATCATACTGGGTGCCTCTTATTGAGGACTCATGCAAGCAGATACTTGATGCTGCGAGAAACACCAATGCAAAGACGATGGGTCCTGTTCCATTGCCAACCAAGAAGCGTATCTACTGTGTTCTCAAGTCTCCTCACGTTCACAAGGATGCTAGGTTCCATTTTGAAATCCGGACACACCAGCGCATGATTGATATTCTCTACCCGACTGCTCAAACTATCGATTCTTTGATGCAACTTGATCTTCCTGCTGGTGTCGATGTGGAAGTGAAGCTCTGAAGAAGAAGCGTAACTACAATGATGTGATGGGCACTTTTGCATTGAATGAACAGACTGTTTCAGATCAACTACATTGCTTAGAACTGGTAAGCCTTGTATCATCTTTTTTGAGAACCTTTGTAACGAAAATGTAAGTTGTATTATCTGGTCCTTGGAATCTATCTTTAGCGATGCTTGGTTCTTAGTTGATGAACATATCCTTAATTAAGCAAGTTCAAAGGAATTTGTTTTTGTTTTACTAATTGTTATGCAGTTTGCCTGTGTCCATTATGATAAGTTTTTTTATTTTTGTTGTATTCAAAGTGGAATCTTTTTTTTGAATATAAGTATTATAGTAGTATTATAGTAGGAATAAGAAGATGCACAACTTGAGTTATTTTAAAACCAGGAGGTTGGAATCTTGAAAGCGACTTCATTATTATAATAAACGTATAAGTTCGTTTATCCACAAACTCAATAGGGAAATTATAATTTTTTGTCACAACACATTTCATTTATCAATTATCCTCTAGACTCAGTTCGTCTCTTTTCTTAGCAGCCAATTAAAACCTGCAAGTGTTGTTTTACCAGTCTTTCCTTTCCAAGCTTACGAAACGATCCAAGGGAAAAAACAGTAATGGTTTCGAATTTATGTCTGATAAGTCGATGGCGCTTTTTCTTATCTAATTTGGAATTTTGGATGATGCAGAAATTGTCAACCCCCCAATATTATAAAGTTGAAGAATATTCTTTTCCATGTTCAATCATACACACAACTATATCATTATTTTAATCATATGAAATGGTTTTTGGTATAGTAAGAAGTGGTTCAT
CDS Sequence
- >AT3G13120.1
ATGGCGGTTTCTACTGTATCGTCGTTTCTATTGCCATCTTTCGGCATTCCAAGCTCTTCGCCTTCTTCTACCAGACTCAAAGTCTCTCTGCTGCCTTCATCTTCTACCCATGGCGGCCTTAGTTCCTGCGTCCTTACGAAACCATCCGTCTCGCTTACGAAGGTCTTCGCTGTTCCCGATACCCTAGATCCAACTCCAGAAATTCTCGATGAACCCGCCTCTGAGGTTCCGAGCTCTTCATCCATCAGTGTAGACGCGGATAAGATGGCGCCAAAGCAAAAGATTAGGATCAAGCTTAGATCATACTGGGTGCCTCTTATTGAGGACTCATGCAAGCAGATACTTGATGCTGCGAGAAACACCAATGCAAAGACGATGGGTCCTGTTCCATTGCCAACCAAGAAGCGTATCTACTGTGTTCTCAAGTCTCCTCACGTTCACAAGGATGCTAGGTTCCATTTTGAAATCCGGACACACCAGCGCATGATTGATATTCTCTACCCGACTGCTCAAACTATCGATTCTTTGATGCAACTTGATCTTCCTGCTGGTGTCGATGTGGAAGTGAAGCTCTGA - >AT3G13120.2
ATGGCGGTTTCTACTGTATCGTCGTTTCTATTGCCATCTTTCGGCATTCCAAGCTCTTCGCCTTCTTCTACCAGACTCAAAGTCTCTCTGCTGCCTTCATCTTCTACCCATGGCGGCCTTAGTTCCTGCGTCCTTACGAAACCATCCGTCTCGCTTACGAAGGTCTTCGCTGTTCCCGATACCCTAGATCCAACTCCAGAAATTCTCGATGAACCCGCCTCTGAGGTTCCGAGCTCTTCATCCATCAGTGTAGACGCGGATAAGATGGCGCCAAAGCAAAAGATTAGGATCAAGCTTAGATCATACTGGGTGCCTCTTATTGAGGACTCATGCAAGCAGATACTTGATGCTGCGAGAAACACCAATGCAAAGACGATGGGTCCTGTTCCATTGCCAACCAAGAAGCGTATCTACTGTGTTCTCAAGTCTCCTCACGTTCACAAGGATGCTAGGTTCCATTTTGAAATCCGGACACACCAGCGCATGATTGATATTCTCTACCCGACTGCTCAAACTATCGATTCTTTGATGCAACTTGATCTTCCTGCTGGTGTCGATGTGGAAGTGAAGCTCTGA - >AT3G13120.3
ATGGCGGTTTCTACTGTATCGTCGTTTCTATTGCCATCTTTCGGCATTCCAAGCTCTTCGCCTTCTTCTACCAGACTCAAAGTCTCTCTGCTGCCTTCATCTTCTACCCATGGCGGCCTTAGTTCCTGCGTCCTTACGAAACCATCCGTCTCGCTTACGAAGGTCTTCGCTGTTCCCGATACCCTAGATCCAACTCCAGAAATTCTCGATGAACCCGCCTCTGAGGTTCCGAGCTCTTCATCCATCAGTGTAGACGCGGATAAGATGGCGCCAAAGCAAAAGATTAGGATCAAGCTTAGATCATACTGGGTGCCTCTTATTGAGGACTCATGCAAGCAGATACTTGATGCTGCGAGAAACACCAATGCAAAGACGATGGGTCCTGTTCCATTGCCAACCAAGAAGCGTATCTACTGTGTTCTCAAGTCTCCTCACGTTCACAAGGATGCTAGGTTCCATTTTGAAATCCGGACACACCAGCGCATGATTGATATTCTCTACCCGACTGCTCAAACTATCGATTCTTTGATGCAACTTGATCTTCCTGCTGGTGTCGATGTGGAAGTGAAGCTCTGA
Protein Sequence
- >AT3G13120.1
MAVSTVSSFLLPSFGIPSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKPSVSLTKVFAVPDTLDPTPEILDEPASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL - >AT3G13120.2
MAVSTVSSFLLPSFGIPSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKPSVSLTKVFAVPDTLDPTPEILDEPASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL - >AT3G13120.3
MAVSTVSSFLLPSFGIPSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKPSVSLTKVFAVPDTLDPTPEILDEPASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL