Information report for AT3G12990
Gene Details
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Functional Descriptions
- GO:0000176 — part of — nuclear exosome (RNase complex)
- GO:0071042 — involved in — nuclear polyadenylation-dependent mRNA catabolic process
- GO:0043928 — involved in — exonucleolytic catabolism of deadenylated mRNA
- GO:0034475 — involved in — exonucleolytic trimming to generate mature 3-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
- GO:0000177 — part of — cytoplasmic exosome (RNase complex)
- GO:0005737 — located in — cytoplasm
- GO:0071035 — involved in — nuclear polyadenylation-dependent rRNA catabolic process
- GO:0071028 — involved in — nuclear mRNA surveillance
- GO:0000175 — enables — 3-5-RNA exonuclease activity
- GO:0034473 — involved in — U1 snRNA 3-end processing
- GO:0071038 — involved in — nuclear polyadenylation-dependent tRNA catabolic process
- GO:0000967 — involved in — U5 snRNA 3-end processing
- cer7-3 Atrrp45a — The double mutant is gametophytic lethal for both female and male gametophytes.
Functional Keywords
Literature and News
Gene Resources
- UniProt: A0A2H1ZEI6
- EMBL: CP002686
- AlphaFoldDB: A0A2H1ZEI6
- EnsemblPlants: AT3G12990.2
- Gramene: AT3G12990.2
- ExpressionAtlas: AT3G12990
- InterPro: IPR001247, IPR020568, IPR027408
- PANTHER: PTHR11097, PTHR11097:SF14
- SUPFAM: SSF54211
- Gene3D: 3.30.230.70
- OrthoDB: A0A2H1ZEI6
- SWISS-MODEL: A0A2H1ZEI6
- Conserved Domain Database: cd11368
Homologs
- Daucus carota DCAR_019686
- Solanum melongena Sme2.5_00019.1_g00022.1
Sequences
cDNA Sequence
- >AT3G12990.2
GTTAAATTGAAATAAATCCCTCCTCTTCTCTGTTCACAAAATCCTCGCGCCACAAAACCCTAGCTGAACGGAAGAAGCTCACTAGCAAACAATGGAGGGGAGGTTGAATAATATGTGGAGGTTGACTGTGAATGAGAGCAAATTCGTTGAATCTGCGTTGCAATCTGAGCTCAGAGTCGATGGTCGTGGCCTTTATGATTACCGCAAGCTTACTATTAAGTTTGGCAAGGAATATGGCAGCTCACAAGTTCAACTGGGTCAGACTCATGTAATGGCTTTTGTGACTGCTCAGCTAGTACAACCTTACAAAGACAGACCTAGTGAAGGCTCCTTCTCTATCTTCACCGAGTTTTCTCCAATGGCTGATCCATCGTTTGAGCCAGGGCATCCTGGTGAATCTGCTGTTGAGCTTGGCCGTATTATAGACCGTGCTCTACGAGAAAGCCGTGCAGTAGATACAGAGTCGCTTTGTGTTCTAGCCGGAAAGCTGGTTTGGTCTGTTCGCATTGATCTTCACATTTTGGACAATGGAGGGAACTTGGTTGATGCTGCTAATGTTGCTGCCTTAGCCGCACTCATGACTTTCAGGAGACCTGATTGCACTGTAGGAGGGGACAACAGTCAAGACGTGATCATACATCCACCCGAAGAAAGGGAACCACTTCCTTTGATAATACATCATCTCCCAATAGCCTTCACGTTTGGATTTTTTAATAAAGGCAGTATCTTGGTAAAAAAATTGTGTTTTGTTTATTGATAATCTTGTTTACTACGTTTTTGTTTGCATCTGAGATTACAAGTGTGTTGTGTTCTTATGCAGGTGATGGACCCAACTTACGTTGAAGAAGCTGTTATGTGTGGGAGAATGACTGTGACAGTCAATGCCAATGGCGATATATGCGCAATCCAAAAACCAGGAGAAGAAGGCGTGAACCAGAGTGTAATCCTTCATTGCCTGCGTCTTGCTTCTTCAAGAGCTTCTGCAACAACAAAGATAATTAGAGATGCAGTTGAAGCATACAACCGTGAGAGGAGCTCACAGAAGGTGAAGCGGCATCATACTTTGGCTAAGTCTGAAGTTTTGGGACCTATTGTAGTTGTGTAGGAAGAGACATAAATAAAACATTTGCTGTGGTCGTCGATTGTAAATAAAGATTTTAGTTGTAGAAATCTTATCAGCAACACTAAGCTATAAAAACGTCGATATGATCAAGACATGTTGAGACTTCTCGCACTTAAATAGATGACTAGTCTCAACTCTTCC - >AT3G12990.3
GTTAAATTGAAATAAATCCCTCCTCTTCTCTGTTCACAAAATCCTCGCGCCACAAAACCCTAGCTGAACGGAAGAAGCTCACTAGCAAACAATGGAGGGGAGGTTGAATAATATGTGGAGGTTGACTGTGAATGAGAGCAAATTCGTTGAATCTGCGTTGCAATCTGAGCTCAGAGTCGATGGTCGTGGCCTTTATGATTACCGCAAGCTTACTATTAAGTTTGGCAAGGAATATGGCAGCTCACAAGTTCAACTGGGTCAGACTCATGTAATGGCTTTTGTGACTGCTCAGCTAGTACAACCTTACAAAGACAGACCTAGTGAAGGCTCCTTCTCTATCTTCACCGAGTTTTCTCCAATGGCTGATCCATCGTTTGAGCCAGGGCATCCTGGTGAATCTGCTGTTGAGCTTGGCCGTATTATAGACCGTGCTCTACGAGAAAGCCGTGCAGTAGATACAGAGTCGCTTTGTGTTCTAGCCGGAAAGCTGGTTTGGTCTGTTCGCATTGATCTTCACATTTTGGACAATGGAGGGAACTTGGTTGATGCTGCTAATGTTGCTGCCTTAGCCGCACTCATGACTTTCAGGAGACCTGATTGCACTGTAGGAGGGGACAACAGTCAAGACGTGATCATACATCCACCCGAAGAAAGGGAACCACTTCCTTTGATAATACATCATCTCCCAATAGCCTTCACGTTTGGATTTTTTAATAAAGGCAGTATCTTGGTAAAAAAATTGTGTTTTGTTTATTGATAATCTTGTTTACTACGTTTTTGTTTGCATCTGAGATTACAAGTGTGTTGTGTTCTTATGCAGGTGATGGACCCAACTTACGTTGAAGAAGCTGTTATGTGTGGGAGAATGACTGTGACAGTCAATGCCAATGGCGATATATGCGCAATCCAAAAACCAGGAGAAGAAGGCGTGAACCAGAGTGTAATCCTTCATTGCCTGCGTCTTGCTTCTTCAAGAGCTTCTGCAACAACAAAGATAATTAGAGATGCAGTTGAAGCATACAACCGTGAGAGGAGCTCACAGAAGGTGAAGCGGCATCATACTTTGGCTAAGTCTGAAGTTTTGGGACCTATTGTAGTTGTGTAGGAAGAGACATAAATAAAACATTTGCTGTGGTCGTCGATTGTAAATAAAGATTTTAGTTGTAGAAATCTTATCAGCAACACTAAGCTATAAAAACGTCGATATGATCAAGACATGTTGAGACTTCTCGCACTTAAATAGATGACTAGTCTCAACTCTTCC - >AT3G12990.1
GTTAAATTGAAATAAATCCCTCCTCTTCTCTGTTCACAAAATCCTCGCGCCACAAAACCCTAGCTGAACGGAAGAAGCTCACTAGCAAACAATGGAGGGGAGGTTGAATAATATGTGGAGGTTGACTGTGAATGAGAGCAAATTCGTTGAATCTGCGTTGCAATCTGAGCTCAGAGTCGATGGTCGTGGCCTTTATGATTACCGCAAGCTTACTATTAAGTTTGGCAAGGAATATGGCAGCTCACAAGTTCAACTGGGTCAGACTCATGTAATGGCTTTTGTGACTGCTCAGCTAGTACAACCTTACAAAGACAGACCTAGTGAAGGCTCCTTCTCTATCTTCACCGAGTTTTCTCCAATGGCTGATCCATCGTTTGAGCCAGGGCATCCTGGTGAATCTGCTGTTGAGCTTGGCCGTATTATAGACCGTGCTCTACGAGAAAGCCGTGCAGTAGATACAGAGTCGCTTTGTGTTCTAGCCGGAAAGCTGGTTTGGTCTGTTCGCATTGATCTTCACATTTTGGACAATGGAGGGAACTTGGTTGATGCTGCTAATGTTGCTGCCTTAGCCGCACTCATGACTTTCAGGAGACCTGATTGCACTGTAGGAGGGGACAACAGTCAAGACGTGATCATACATCCACCCGAAGAAAGGGAACCACTTCCTTTGATAATACATCATCTCCCAATAGCCTTCACGTTTGGATTTTTTAATAAAGGCAGTATCTTGGTAAAAAAATTGTGTTTTGTTTATTGATAATCTTGTTTACTACGTTTTTGTTTGCATCTGAGATTACAAGTGTGTTGTGTTCTTATGCAGGTGATGGACCCAACTTACGTTGAAGAAGCTGTTATGTGTGGGAGAATGACTGTGACAGTCAATGCCAATGGCGATATATGCGCAATCCAAAAACCAGGAGAAGAAGGCGTGAACCAGAGTGTAATCCTTCATTGCCTGCGTCTTGCTTCTTCAAGAGCTTCTGCAACAACAAAGATAATTAGAGATGCAGTTGAAGCATACAACCGTGAGAGGAGCTCACAGAAGGTGAAGCGGCATCATACTTTGGCTAAGTCTGAAGTTTTGGGACCTATTGTAGTTGTGTAGGAAGAGACATAAATAAAACATTTGCTGTGGTCGTCGATTGTAAATAAAGATTTTAGTTGTAGAAATCTTATCAGCAACACTAAGCTATAAAAACGTCGATATGATCAAGACATGTTGAGACTTCTCGCACTTAAATAGATGACTAGTCTCAACTCTTCC - >AT3G12990.4
GTTAAATTGAAATAAATCCCTCCTCTTCTCTGTTCACAAAATCCTCGCGCCACAAAACCCTAGCTGAACGGAAGAAGCTCACTAGCAAACAATGGAGGGGAGGTTGAATAATATGTGGAGGTTGACTGTGAATGAGAGCAAATTCGTTGAATCTGCGTTGCAATCTGAGCTCAGAGTCGATGGTCGTGGCCTTTATGATTACCGCAAGCTTACTATTAAGTTTGGCAAGGAATATGGCAGCTCACAAGTTCAACTGGGTCAGACTCATGTAATGGCTTTTGTGACTGCTCAGCTAGTACAACCTTACAAAGACAGACCTAGTGAAGGCTCCTTCTCTATCTTCACCGAGTTTTCTCCAATGGCTGATCCATCGTTTGAGCCAGGGCATCCTGGTGAATCTGCTGTTGAGCTTGGCCGTATTATAGACCGTGCTCTACGAGAAAGCCGTGCAGTAGATACAGAGTCGCTTTGTGTTCTAGCCGGAAAGCTGGTTTGGTCTGTTCGCATTGATCTTCACATTTTGGACAATGGAGGGAACTTGGTTGATGCTGCTAATGTTGCTGCCTTAGCCGCACTCATGACTTTCAGGAGACCTGATTGCACTGTAGGAGGGGACAACAGTCAAGACGTGATCATACATCCACCCGAAGAAAGGGAACCACTTCCTTTGATAATACATCATCTCCCAATAGCCTTCACGTTTGGATTTTTTAATAAAGGCAGTATCTTGGTAAAAAAATTGTGTTTTGTTTATTGATAATCTTGTTTACTACGTTTTTGTTTGCATCTGAGATTACAAGTGTGTTGTGTTCTTATGCAGGTGATGGACCCAACTTACGTTGAAGAAGCTGTTATGTGTGGGAGAATGACTGTGACAGTCAATGCCAATGGCGATATATGCGCAATCCAAAAACCAGGAGAAGAAGGCGTGAACCAGAGTGTAATCCTTCATTGCCTGCGTCTTGCTTCTTCAAGAGCTTCTGCAACAACAAAGATAATTAGAGATGCAGTTGAAGCATACAACCGTGAGAGGAGCTCACAGAAGGTGAAGCGGCATCATACTTTGGCTAAGTCTGAAGTTTTGGGACCTATTGTAGTTGTGTAGGAAGAGACATAAATAAAACATTTGCTGTGGTCGTCGATTGTAAATAAAGATTTTAGTTGTAGAAATCTTATCAGCAACACTAAGCTATAAAAACGTCGATATGATCAAGACATGTTGAGACTTCTCGCACTTAAATAGATGACTAGTCTCAACTCTTCC
CDS Sequence
- >AT3G12990.2
ATGGAGGGGAGGTTGAATAATATGTGGAGGTTGACTGTGAATGAGAGCAAATTCGTTGAATCTGCGTTGCAATCTGAGCTCAGAGTCGATGGTCGTGGCCTTTATGATTACCGCAAGCTTACTATTAAGTTTGGCAAGGAATATGGCAGCTCACAAGTTCAACTGGGTCAGACTCATGTAATGGCTTTTGTGACTGCTCAGCTAGTACAACCTTACAAAGACAGACCTAGTGAAGGCTCCTTCTCTATCTTCACCGAGTTTTCTCCAATGGCTGATCCATCGTTTGAGCCAGGGCATCCTGGTGAATCTGCTGTTGAGCTTGGCCGTATTATAGACCGTGCTCTACGAGAAAGCCGTGCAGTAGATACAGAGTCGCTTTGTGTTCTAGCCGGAAAGCTGGTTTGGTCTGTTCGCATTGATCTTCACATTTTGGACAATGGAGGGAACTTGGTTGATGCTGCTAATGTTGCTGCCTTAGCCGCACTCATGACTTTCAGGAGACCTGATTGCACTGTAGGAGGGGACAACAGTCAAGACGTGATCATACATCCACCCGAAGAAAGGGAACCACTTCCTTTGATAATACATCATCTCCCAATAGCCTTCACGTTTGGATTTTTTAATAAAGGCAGTATCTTGGTAAAAAAATTGTGTTTTGTTTATTGA - >AT3G12990.3
ATGGAGGGGAGGTTGAATAATATGTGGAGGTTGACTGTGAATGAGAGCAAATTCGTTGAATCTGCGTTGCAATCTGAGCTCAGAGTCGATGGTCGTGGCCTTTATGATTACCGCAAGCTTACTATTAAGTTTGGCAAGGAATATGGCAGCTCACAAGTTCAACTGGGTCAGACTCATGTAATGGCTTTTGTGACTGCTCAGCTAGTACAACCTTACAAAGACAGACCTAGTGAAGGCTCCTTCTCTATCTTCACCGAGTTTTCTCCAATGGCTGATCCATCGTTTGAGCCAGGGCATCCTGGTGAATCTGCTGTTGAGCTTGGCCGTATTATAGACCGTGCTCTACGAGAAAGCCGTGCAGTAGATACAGAGTCGCTTTGTGTTCTAGCCGGAAAGCTGGTTTGGTCTGTTCGCATTGATCTTCACATTTTGGACAATGGAGGGAACTTGGTTGATGCTGCTAATGTTGCTGCCTTAGCCGCACTCATGACTTTCAGGAGACCTGATTGCACTGTAGGAGGGGACAACAGTCAAGACGTGATCATACATCCACCCGAAGAAAGGGAACCACTTCCTTTGATAATACATCATCTCCCAATAGCCTTCACGTTTGGATTTTTTAATAAAGGCAGTATCTTGGTAAAAAAATTGTGTTTTGTTTATTGA - >AT3G12990.1
ATGGAGGGGAGGTTGAATAATATGTGGAGGTTGACTGTGAATGAGAGCAAATTCGTTGAATCTGCGTTGCAATCTGAGCTCAGAGTCGATGGTCGTGGCCTTTATGATTACCGCAAGCTTACTATTAAGTTTGGCAAGGAATATGGCAGCTCACAAGTTCAACTGGGTCAGACTCATGTAATGGCTTTTGTGACTGCTCAGCTAGTACAACCTTACAAAGACAGACCTAGTGAAGGCTCCTTCTCTATCTTCACCGAGTTTTCTCCAATGGCTGATCCATCGTTTGAGCCAGGGCATCCTGGTGAATCTGCTGTTGAGCTTGGCCGTATTATAGACCGTGCTCTACGAGAAAGCCGTGCAGTAGATACAGAGTCGCTTTGTGTTCTAGCCGGAAAGCTGGTTTGGTCTGTTCGCATTGATCTTCACATTTTGGACAATGGAGGGAACTTGGTTGATGCTGCTAATGTTGCTGCCTTAGCCGCACTCATGACTTTCAGGAGACCTGATTGCACTGTAGGAGGGGACAACAGTCAAGACGTGATCATACATCCACCCGAAGAAAGGGAACCACTTCCTTTGATAATACATCATCTCCCAATAGCCTTCACGTTTGGATTTTTTAATAAAGGCAGTATCTTGGTAAAAAAATTGTGTTTTGTTTATTGA - >AT3G12990.4
ATGGAGGGGAGGTTGAATAATATGTGGAGGTTGACTGTGAATGAGAGCAAATTCGTTGAATCTGCGTTGCAATCTGAGCTCAGAGTCGATGGTCGTGGCCTTTATGATTACCGCAAGCTTACTATTAAGTTTGGCAAGGAATATGGCAGCTCACAAGTTCAACTGGGTCAGACTCATGTAATGGCTTTTGTGACTGCTCAGCTAGTACAACCTTACAAAGACAGACCTAGTGAAGGCTCCTTCTCTATCTTCACCGAGTTTTCTCCAATGGCTGATCCATCGTTTGAGCCAGGGCATCCTGGTGAATCTGCTGTTGAGCTTGGCCGTATTATAGACCGTGCTCTACGAGAAAGCCGTGCAGTAGATACAGAGTCGCTTTGTGTTCTAGCCGGAAAGCTGGTTTGGTCTGTTCGCATTGATCTTCACATTTTGGACAATGGAGGGAACTTGGTTGATGCTGCTAATGTTGCTGCCTTAGCCGCACTCATGACTTTCAGGAGACCTGATTGCACTGTAGGAGGGGACAACAGTCAAGACGTGATCATACATCCACCCGAAGAAAGGGAACCACTTCCTTTGATAATACATCATCTCCCAATAGCCTTCACGTTTGGATTTTTTAATAAAGGCAGTATCTTGGTAAAAAAATTGTGTTTTGTTTATTGA
Protein Sequence
- >AT3G12990.2
MEGRLNNMWRLTVNESKFVESALQSELRVDGRGLYDYRKLTIKFGKEYGSSQVQLGQTHVMAFVTAQLVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRAVDTESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVIIHPPEEREPLPLIIHHLPIAFTFGFFNKGSILVKKLCFVY - >AT3G12990.3
MEGRLNNMWRLTVNESKFVESALQSELRVDGRGLYDYRKLTIKFGKEYGSSQVQLGQTHVMAFVTAQLVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRAVDTESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVIIHPPEEREPLPLIIHHLPIAFTFGFFNKGSILVKKLCFVY - >AT3G12990.1
MEGRLNNMWRLTVNESKFVESALQSELRVDGRGLYDYRKLTIKFGKEYGSSQVQLGQTHVMAFVTAQLVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRAVDTESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVIIHPPEEREPLPLIIHHLPIAFTFGFFNKGSILVKKLCFVY - >AT3G12990.4
MEGRLNNMWRLTVNESKFVESALQSELRVDGRGLYDYRKLTIKFGKEYGSSQVQLGQTHVMAFVTAQLVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRAVDTESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVIIHPPEEREPLPLIIHHLPIAFTFGFFNKGSILVKKLCFVY