Information report for AT3G12920
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- GO:0004842 — enables — ubiquitin-protein transferase activity
- GO:0043067 — acts upstream of or within — regulation of programmed cell death
- GO:0043067 — involved in — regulation of programmed cell death
- GO:0005737 — located in — cytoplasm
- GO:0043161 — involved in — proteasome-mediated ubiquitin-dependent protein catabolic process
- GO:0005634 — located in — nucleus
Functional Keywords
Literature and News
- Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome. DOI: 10.1186/gb-2002-3-4-research0016 ; PMID: 11983057
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- The Arabidopsis Botrytis Susceptible1 Interactor defines a subclass of RING E3 ligases that regulate pathogen and stress responses. DOI: 10.1104/pp.110.163915 ; PMID: 20921156
- EMF1 interacts with EIP1, EIP6 or EIP9 involved in the regulation of flowering time in Arabidopsis. DOI: 10.1093/pcp/pcr084 ; PMID: 21700722
- DELLA proteins and their interacting RING Finger proteins repress gibberellin responses by binding to the promoters of a subset of gibberellin-responsive genes in Arabidopsis. DOI: 10.1105/tpc.112.108951 ; PMID: 23482857
- A nucleocytoplasmic-localized E3 ligase affects the NLR receptor stability. DOI: 10.1016/j.bbrc.2021.10.052 ; PMID: 34715495
- Analysis of the Arabidopsis nuclear proteome and its response to cold stress. DOI: 10.1046/j.1365-313x.2003.01907.x ; PMID: 14617066
- Repertoire of plant RING E3 ubiquitin ligases revisited: New groups counting gene families and single genes. DOI: 10.1371/journal.pone.0203442 ; PMID: 30169501
Gene Resources
Sequences
cDNA Sequence
- >AT3G12920.1
AAATAAATAAAATAAAACATCACATCTTCCTCTCTGTTCTCTATAAATTGGCAGACAAGAGTGTGTTGGGTTCTGCTTTGATATTTGTTTTTTAGTTTCTCCTTCTCTCTGCAGAAACCGTAATTAAAAACCCCCCACAACTTCTTCAACATAACGTCTTCTTCTTCCATCTTTCGTTGCATTCACGTTTTTAAAGGTTCTCTGAATCACTCCATTAAAAATAGCTTTGAACAAGTTTTCTCAATAGTCAACAAAAACAATGGCCGTTGAAGCTCACCATCTAAATCCTCTGTTCTCTTCCAACAGAGAAATGATTCATCCCGTTGAAGCAAGCGGTGTAGTCTATAACACCCAGATGAGATACGGCACCGTTCCGACGTTTAACCCCACCGTGGAATGTCAAACTTCTCTGTTTAACCCAATCTACAACATCTCACCAGTCGATCGTTTGGTTCATCAATCCATGAAACCAACGATACAGTCCGTTGATAGTTCTCTCACATTCAACAGCGACAACAACGTCGATTTTCTTCGTCCTGTGTCGTCGAGAAAACGTTCTAGAGAAGAATCCGTTGTTCTAAACCCTTCCGCTTATATGCAAATTCAGAAAAATCCCACCGATCCTCTTATGTTCCTTGGCCAAGACTTGTCTTCTAACGTTCAACAACATCATTTCGATATCGATCGTTTGATCTCTAATCACGTTGAGAGAATGAGAATGGAGATTGAAGAGAAGAGAAAAACACAAGGGAGAAGGATAGTGGAAGCCGTCGAACAAGGTTTGATGAAGACACTAAGAGCCAAAGACGATGAGATAAATCACATCGGGAAACTAAACCTCTTTCTCGAAGAGAAGGTTAAGTCTTTGTGCGTAGAGAATCAGATATGGCGTGACGTGGCACAGTCTAATGAAGCCACCGTAAACGCCCTACGTTCTAACTTGCAACAAGTTCTCGCAGCCGTGGAGCGTAACCGGTGGGAGGAGCCGCCCACGGTGGCTGACGACGCACAGTCTTGTTGCGGTAGCAACGACGAAGGTGATAGCGAGGAAGAACGGTGGAAGTTAGCGGGAGAGGCGCAGGATACGAAAAAGATGTGTAGGGTAGGGATGAGTATGTGTAGAAGCTGTGGGAAAGGAGAAGCAAGTGTGTTACTGTTACCGTGCAGACACATGTGTCTATGTTCTGTGTGTGGCTCTTCACTCAACACTTGTCCTATATGTAAATCTCCAAAGACCGCTAGTCTACATGTTAATCTTTCCTCTTAGACCTAACCAATACCAGTAAAATGTAAATGCCCCCAAAAAAAGTAAATAGTAGACAAAAGTTTCTTGGTTAAAAACTGTTCATTCTTTTTTTGTTTGGATGGTGATGATGATGATGGAACACGAATCTTTGACATATGTGTCAGATCTTTAAATTTCGTAAGGGGTTCACGAGGGACCTCTGTTGCTAAAAATCGTGGGTTAGGTTTATACCCACTTTCAATGTCATTTCCCATCTTTGTATGAATTTTCACCAAAAAAAGTGGAAAAGTTTTGTGTGTGGTTCAACTACTAGTCTTTTAACATAGTAGTAGTAGGGGTATAACGTCACTTTTCACAAG
CDS Sequence
- >AT3G12920.1
ATGGCCGTTGAAGCTCACCATCTAAATCCTCTGTTCTCTTCCAACAGAGAAATGATTCATCCCGTTGAAGCAAGCGGTGTAGTCTATAACACCCAGATGAGATACGGCACCGTTCCGACGTTTAACCCCACCGTGGAATGTCAAACTTCTCTGTTTAACCCAATCTACAACATCTCACCAGTCGATCGTTTGGTTCATCAATCCATGAAACCAACGATACAGTCCGTTGATAGTTCTCTCACATTCAACAGCGACAACAACGTCGATTTTCTTCGTCCTGTGTCGTCGAGAAAACGTTCTAGAGAAGAATCCGTTGTTCTAAACCCTTCCGCTTATATGCAAATTCAGAAAAATCCCACCGATCCTCTTATGTTCCTTGGCCAAGACTTGTCTTCTAACGTTCAACAACATCATTTCGATATCGATCGTTTGATCTCTAATCACGTTGAGAGAATGAGAATGGAGATTGAAGAGAAGAGAAAAACACAAGGGAGAAGGATAGTGGAAGCCGTCGAACAAGGTTTGATGAAGACACTAAGAGCCAAAGACGATGAGATAAATCACATCGGGAAACTAAACCTCTTTCTCGAAGAGAAGGTTAAGTCTTTGTGCGTAGAGAATCAGATATGGCGTGACGTGGCACAGTCTAATGAAGCCACCGTAAACGCCCTACGTTCTAACTTGCAACAAGTTCTCGCAGCCGTGGAGCGTAACCGGTGGGAGGAGCCGCCCACGGTGGCTGACGACGCACAGTCTTGTTGCGGTAGCAACGACGAAGGTGATAGCGAGGAAGAACGGTGGAAGTTAGCGGGAGAGGCGCAGGATACGAAAAAGATGTGTAGGGTAGGGATGAGTATGTGTAGAAGCTGTGGGAAAGGAGAAGCAAGTGTGTTACTGTTACCGTGCAGACACATGTGTCTATGTTCTGTGTGTGGCTCTTCACTCAACACTTGTCCTATATGTAAATCTCCAAAGACCGCTAGTCTACATGTTAATCTTTCCTCTTAG
Protein Sequence
- >AT3G12920.1
MAVEAHHLNPLFSSNREMIHPVEASGVVYNTQMRYGTVPTFNPTVECQTSLFNPIYNISPVDRLVHQSMKPTIQSVDSSLTFNSDNNVDFLRPVSSRKRSREESVVLNPSAYMQIQKNPTDPLMFLGQDLSSNVQQHHFDIDRLISNHVERMRMEIEEKRKTQGRRIVEAVEQGLMKTLRAKDDEINHIGKLNLFLEEKVKSLCVENQIWRDVAQSNEATVNALRSNLQQVLAAVERNRWEEPPTVADDAQSCCGSNDEGDSEEERWKLAGEAQDTKKMCRVGMSMCRSCGKGEASVLLLPCRHMCLCSVCGSSLNTCPICKSPKTASLHVNLSS