Information report for AT3G12820
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- GO:0009723 — involved in — response to ethylene
- GO:1990532 — involved in — stress response to nickel ion
- GO:0005634 — located in — nucleus
- GO:1990641 — involved in — response to iron ion starvation
- GO:0010043 — involved in — response to zinc ion
- GO:0010468 — involved in — regulation of gene expression
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0009646 — involved in — response to absence of light
Functional Keywords
- shoot axis apex , root , sepal , flower , hypocotyl
Literature and News
- Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana. DOI: 10.1046/j.1365-313x.1998.00278.x ; PMID: 9839469
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The R2R3-MYB gene family in Arabidopsis thaliana. DOI: 10.1016/s1369-5266(00)00199-0 ; PMID: 11597504
- Unexpected protein families including cell defense components feature in the N-myristoylome of a higher eukaryote. DOI: 10.1074/jbc.M307321200 ; PMID: 12912986
- Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: and shoot-specific genes. DOI: 10.1111/j.1365-313X.2004.02051.x ; PMID: 15078338
- Cesium toxicity in Arabidopsis. DOI: 10.1104/pp.104.046672 ; PMID: 15489280
- The essential basic helix-loop-helix protein FIT1 is required for the iron deficiency response. DOI: 10.1105/tpc.104.024315 ; PMID: 15539473
- The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. DOI: 10.1007/s11103-005-2910-y ; PMID: 16463103
- MYB10 and MYB72 are required for growth under iron-limiting conditions. DOI: 10.1371/journal.pgen.1003953 ; PMID: 24278034
- The iron deficiency response in Arabidopsis thaliana requires the phosphorylated transcription factor URI. DOI: 10.1073/pnas.1916892116 ; PMID: 31776249
- Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana. DOI: 10.1046/j.1365-313x.1998.00278.x ; PMID: 9839469
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Unexpected protein families including cell defense components feature in the N-myristoylome of a higher eukaryote. DOI: 10.1074/jbc.M307321200 ; PMID: 12912986
- Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. DOI: 10.1093/molbev/msj051 ; PMID: 16280546
Gene Resources
- UniProt: A0A654F6J6
- EMBL: CACRSJ010000106, CACSHJ010000089, LR881468
- AlphaFoldDB: A0A654F6J6
- EnsemblPlants: AT3G12820.1
- Gramene: AT3G12820.1
- KEGG: ath:AT3G12820
- Orthologous matrix: WSHEESE
- ExpressionAtlas: AT3G12820
- InterPro: IPR001005, IPR009057, IPR017930
- PANTHER: PTHR47997, PTHR47997:SF75
- SUPFAM: SSF46689
- PROSITE: PS50090, PS51294
- Gene3D: 1.10.10.60
- OrthoDB: A0A654F6J6
- SWISS-MODEL: A0A654F6J6
- Conserved Domain Database: cd00167
Homologs
- Brassica napus GSBRNA2T00026379001, GSBRNA2T00110700001, GSBRNA2T00076475001
- Brassica oleracea XP_013593773.1, XP_013627950.1
- Brassica rapa XP_009135252.1, XP_009124676.1, XP_009124677.1
- Raphanus raphanistrum RrC7190_p3, RrC14993_p1
Sequences
cDNA Sequence
- >AT3G12820.1
AGATTCTCTAAAATTAAAAGTGGGGTGTGATGGGGAATAGAAGAGCACCATGCTGTGACAAAAGCCAAGTGAAGAGAGGGCCATGGAGTGATGAAGAAAGTGAAAGACTCAGATCTTTTATCCTCAAAAATGGTCATCAAAATTGGCGATCTCTTCCCAAACTCGCTGGATTGATGAGATGCGGAAAGAGTTGTCGTCTAAGATGGATAAACTATCTGAGACCAGGTCTCAAACGAGGCAACTTCACCAAGGAGGAGGAAGATACCATTATCCACCTTCACCAAGCTTATGGAAACAAGTGGTCTAAGATCGCATCCAACTTCCCGGGAAGGACAGACAACGAGATCAAGAATGTATGGAACACTCATCTCAAGAAGCGGTTGGTGAAGAGGAGCATTTCATCATCATCATCCGATGTTACCAATCATTCAGTGTCTTCTACCTCTTCTTCCTCTTCCTCAATCTCGTCAGTCTTGCAGGACGTTATTATTAAGAGTGAGAGGCCTAACCAGGAAGAGGAGTTTGGGGAAATCTTGGTGGAGCAAATGGCATGTGGATTTGAGGTGGATGCACCACAATCACTAGAATGTCTCTTTGACGATAGCCAGGTTCCTCCTCCTATATCTAAACCAGACTCACTACAAACCCATGGGAAGTCATCAGATCACGAATTTTGGAGCCGACTGATTGAACCAGGGTTCGATGATTACAATGAGTGGCTCATTTTCTTGGATAACCAAACTTGCTAGAACACACAAGGAGTTGACCCATCATGTCTTATTGTTGCATTGTCTTTTTTCCTTTGTTTTAGATAAATTGAGAACACACTGTTTTTGTAAAAGCTAGTATTGGAAACTAAAATGTAAACGAGTCAGAAGCTAGAATGTAAACGGTTGGGGACAAAACCATATTTCACATTAGATATTTTGATGAACTTTGGAAACACAAAAACCTACGAAGCTGTCACTTTCTGCATTACAAAAGATTTTGCCCATCAAAAGTGGGAGGTTAAGAAAATGATCATCCACAATCATCAGCATTTTCTTCTGCAAGCAGGTTTTTACTTTTACAAAAGGCTTTTTTACTACTCTATTTCTGAGATATCCGAAGCTAATGAGCAATCATCAAGGCCTGAGGTAAAGAATGGATCATACCATTGTGAACAGCTTATCATCTCTATCTCTGCTGAATTCGCTTTCTCATCCACCTCCTGCTCCTCCTC - >AT3G12820.2
AGATTCTCTAAAATTAAAAGTGGGGTGTGATGGGGAATAGAAGAGCACCATGCTGTGACAAAAGCCAAGTGAAGAGAGGGCCATGGAGTGATGAAGAAAGTGAAAGACTCAGATCTTTTATCCTCAAAAATGGTCATCAAAATTGGCGATCTCTTCCCAAACTCGCTGGATTGATGAGATGCGGAAAGAGTTGTCGTCTAAGATGGATAAACTATCTGAGACCAGGTCTCAAACGAGGCAACTTCACCAAGGAGGAGGAAGATACCATTATCCACCTTCACCAAGCTTATGGAAACAAGTGGTCTAAGATCGCATCCAACTTCCCGGGAAGGACAGACAACGAGATCAAGAATGTATGGAACACTCATCTCAAGAAGCGGTTGGTGAAGAGGAGCATTTCATCATCATCATCCGATGTTACCAATCATTCAGTGTCTTCTACCTCTTCTTCCTCTTCCTCAATCTCGTCAGTCTTGCAGGACGTTATTATTAAGAGTGAGAGGCCTAACCAGGAAGAGGAGTTTGGGGAAATCTTGGTGGAGCAAATGGCATGTGGATTTGAGGTGGATGCACCACAATCACTAGAATGTCTCTTTGACGATAGCCAGGTTCCTCCTCCTATATCTAAACCAGACTCACTACAAACCCATGGGAAGTCATCAGATCACGAATTTTGGAGCCGACTGATTGAACCAGGGTTCGATGATTACAATGAGTGGCTCATTTTCTTGGATAACCAAACTTGCTAGAACACACAAGGAGTTGACCCATCATGTCTTATTGTTGCATTGTCTTTTTTCCTTTGTTTTAGATAAATTGAGAACACACTGTTTTTGTAAAAGCTAGTATTGGAAACTAAAATGTAAACGAGTCAGAAGCTAGAATGTAAACGGTTGGGGACAAAACCATATTTCACATTAGATATTTTGATGAACTTTGGAAACACAAAAACCTACGAAGCTGTCACTTTCTGCATTACAAAAGATTTTGCCCATCAAAAGTGGGAGGTTAAGAAAATGATCATCCACAATCATCAGCATTTTCTTCTGCAAGCAGGTTTTTACTTTTACAAAAGGCTTTTTTACTACTCTATTTCTGAGATATCCGAAGCTAATGAGCAATCATCAAGGCCTGAGGTAAAGAATGGATCATACCATTGTGAACAGCTTATCATCTCTATCTCTGCTGAATTCGCTTTCTCATCCACCTCCTGCTCCTCCTC
CDS Sequence
- >AT3G12820.1
ATGGGGAATAGAAGAGCACCATGCTGTGACAAAAGCCAAGTGAAGAGAGGGCCATGGAGTGATGAAGAAAGTGAAAGACTCAGATCTTTTATCCTCAAAAATGGTCATCAAAATTGGCGATCTCTTCCCAAACTCGCTGGATTGATGAGATGCGGAAAGAGTTGTCGTCTAAGATGGATAAACTATCTGAGACCAGGTCTCAAACGAGGCAACTTCACCAAGGAGGAGGAAGATACCATTATCCACCTTCACCAAGCTTATGGAAACAAGTGGTCTAAGATCGCATCCAACTTCCCGGGAAGGACAGACAACGAGATCAAGAATGTATGGAACACTCATCTCAAGAAGCGGTTGGTGAAGAGGAGCATTTCATCATCATCATCCGATGTTACCAATCATTCAGTGTCTTCTACCTCTTCTTCCTCTTCCTCAATCTCGTCAGTCTTGCAGGACGTTATTATTAAGAGTGAGAGGCCTAACCAGGAAGAGGAGTTTGGGGAAATCTTGGTGGAGCAAATGGCATGTGGATTTGAGGTGGATGCACCACAATCACTAGAATGTCTCTTTGACGATAGCCAGGTTCCTCCTCCTATATCTAAACCAGACTCACTACAAACCCATGGGAAGTCATCAGATCACGAATTTTGGAGCCGACTGATTGAACCAGGGTTCGATGATTACAATGAGTGGCTCATTTTCTTGGATAACCAAACTTGCTAG - >AT3G12820.2
ATGGGGAATAGAAGAGCACCATGCTGTGACAAAAGCCAAGTGAAGAGAGGGCCATGGAGTGATGAAGAAAGTGAAAGACTCAGATCTTTTATCCTCAAAAATGGTCATCAAAATTGGCGATCTCTTCCCAAACTCGCTGGATTGATGAGATGCGGAAAGAGTTGTCGTCTAAGATGGATAAACTATCTGAGACCAGGTCTCAAACGAGGCAACTTCACCAAGGAGGAGGAAGATACCATTATCCACCTTCACCAAGCTTATGGAAACAAGTGGTCTAAGATCGCATCCAACTTCCCGGGAAGGACAGACAACGAGATCAAGAATGTATGGAACACTCATCTCAAGAAGCGGTTGGTGAAGAGGAGCATTTCATCATCATCATCCGATGTTACCAATCATTCAGTGTCTTCTACCTCTTCTTCCTCTTCCTCAATCTCGTCAGTCTTGCAGGACGTTATTATTAAGAGTGAGAGGCCTAACCAGGAAGAGGAGTTTGGGGAAATCTTGGTGGAGCAAATGGCATGTGGATTTGAGGTGGATGCACCACAATCACTAGAATGTCTCTTTGACGATAGCCAGGTTCCTCCTCCTATATCTAAACCAGACTCACTACAAACCCATGGGAAGTCATCAGATCACGAATTTTGGAGCCGACTGATTGAACCAGGGTTCGATGATTACAATGAGTGGCTCATTTTCTTGGATAACCAAACTTGCTAG
Protein Sequence
- >AT3G12820.1
MGNRRAPCCDKSQVKRGPWSDEESERLRSFILKNGHQNWRSLPKLAGLMRCGKSCRLRWINYLRPGLKRGNFTKEEEDTIIHLHQAYGNKWSKIASNFPGRTDNEIKNVWNTHLKKRLVKRSISSSSSDVTNHSVSSTSSSSSSISSVLQDVIIKSERPNQEEEFGEILVEQMACGFEVDAPQSLECLFDDSQVPPPISKPDSLQTHGKSSDHEFWSRLIEPGFDDYNEWLIFLDNQTC - >AT3G12820.2
MGNRRAPCCDKSQVKRGPWSDEESERLRSFILKNGHQNWRSLPKLAGLMRCGKSCRLRWINYLRPGLKRGNFTKEEEDTIIHLHQAYGNKWSKIASNFPGRTDNEIKNVWNTHLKKRLVKRSISSSSSDVTNHSVSSTSSSSSSISSVLQDVIIKSERPNQEEEFGEILVEQMACGFEVDAPQSLECLFDDSQVPPPISKPDSLQTHGKSSDHEFWSRLIEPGFDDYNEWLIFLDNQTC