Gene Details:

• Gene ID: AT3G12780
• Gene Symbol: PGK1, PGKp1
• Gene Name: phosphoglycerate kinase 1
• Description: phosphoglycerate kinase 1;(source:Araport11)
• TAIR Accession: locus:2087750
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT3G12780.1

Plant Ontology Annotations:

• PO:0000037  — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
• PO:0008019  — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0009006  — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
• PO:0009009  — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
• PO:0009025  — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
• PO:0009029  — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
• PO:0009031  — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
• PO:0009046  — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
• PO:0009052  — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
• PO:0020030  — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
• PO:0020038  — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
• PO:0020100  — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
• PO:0020137  — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
• PO:0025022  — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
• PO:0025281  — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
• PO:0005020  — vascular bundle — haz vascular (Spanish, exact), vein (exact), 維管束 (Japanese, exact)

Gene Ontology:

• GO:0006094  — involved in — gluconeogenesis
• GO:0019253  — acts upstream of or within — reductive pentose-phosphate cycle
• GO:0006096  — involved in — glycolytic process
• GO:0009570  — located in — chloroplast stroma
• GO:0019375  — acts upstream of or within — galactolipid biosynthetic process
• GO:0019253  — involved in — reductive pentose-phosphate cycle
• GO:0009409  — acts upstream of or within — response to cold
• GO:0005515  — enables — protein binding
• GO:0004618  — enables — phosphoglycerate kinase activity
• GO:0005524  — enables — ATP binding
• GO:0005739  — located in — mitochondrion
• GO:0010319  — located in — stromule
• GO:0009941  — located in — chloroplast envelope
• GO:0010027  — acts upstream of or within — thylakoid membrane organization
• GO:0004672  — enables — protein kinase activity
• GO:0005829  — located in — cytosol
• GO:0009505  — located in — plant-type cell wall
• GO:0009507  — located in — chloroplast
• GO:0048046  — located in — apoplast
• GO:0043531  — enables — ADP binding
• GO:0005634  — located in — nucleus
• GO:0005829  — is active in — cytosol
• GO:0003729  — enables — mRNA binding
• GO:0005737  — located in — cytoplasm
• GO:0009579  — located in — thylakoid

Germplasm Phenotype:

• CS306614  — The pgk1.1 knock-down mutant displayed reduced growth, lower photosynthetic capacity and starch content.
• pgk1.1 pgk3.2  — Double mutant was bigger than pgk3.2, and displayed an intermediate phenotype between the two single mutants in all measured biochemical and physiological parameters.

Function-related keywords:

• shoot axis apex ,  leaf lamina base ,  root ,  shoot system ,  plant embryo ,  vascular leaf ,  stamen ,  sepal ,  flower ,  inflorescence flower pedicel ,  cotyledon ,  petiole ,  hypocotyl ,  leaf apex ,  collective leaf structure ,  pollen ,  vascular bundle

Literature:

• Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.   DOI:  10.1074/jbc.M308435200 ;  PMID:  14576160
• Generation of Arabidopsis protein chips for antibody and serum screening.   DOI:  10.1023/a:1025424814739 ;  PMID:  14558660
• Analysis of the Arabidopsis nuclear proteome and its response to cold stress.   DOI:  10.1046/j.1365-313x.2003.01907.x ;  PMID:  14617066
• PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis.   DOI:  10.1186/1471-2105-4-56 ;  PMID:  14604444
• Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins.   DOI:  10.1105/tpc.016055 ;  PMID:  14671022
• Linking protein fractionation with multidimensional monolithic reversed-phase peptide chromatography/mass spectrometry enhances protein identification from complex mixtures even in the presence of abundant proteins.   DOI:  10.1002/rcm.1376 ;  PMID:  15052571
• High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions.   DOI:  10.1111/j.1365-313X.2004.02281.x ;  PMID:  15610358
• Evaluation of two-dimensional electrophoresis and liquid chromatography–tandem mass spectrometry for tissue-specific protein profiling of laser-microdissected plant samples.   DOI:  10.1002/elps.200410399 ;  PMID:  15971193
• The early responses of Arabidopsis thaliana cells to cadmium exposure explored by protein and metabolite profiling analyses.   DOI:  10.1002/pmic.200500543 ;  PMID:  16502469
• Integrative analysis of transcript and metabolite profiling data sets to evaluate the regulation of biochemical pathways during photomorphogenesis.   DOI:  10.1016/j.abb.2005.11.020 ;  PMID:  16460663
• Proteomic investigation of the effect of salicylic acid on Arabidopsis seed germination and establishment of early defense mechanisms.   DOI:  10.1104/pp.106.082057 ;  PMID:  16679420
• The chloroplast lumen and stromal proteomes of Arabidopsis thaliana show and long-term exposure to low temperature.   DOI:  10.1111/j.1365-313X.2006.02821.x ;  PMID:  16923014
• Comparative proteomic approaches for the isolation of proteins interacting with thioredoxin.   DOI:  10.1002/pmic.200600443 ;  PMID:  17163439
• Molecular physiological analysis of the two plastidic ATP/ADP transporters from Arabidopsis.   DOI:  10.1104/pp.104.049502 ;  PMID:  15516503
• Alternative and effective proteomic analysis in Arabidopsis.   DOI:  10.1002/pmic.200700346 ;  PMID:  17828791
• Proteomics studies of brassinosteroid signal transduction using prefractionation and two-dimensional DIGE.   DOI:  10.1074/mcp.M700358-MCP200 ;  PMID:  18182375
• Proteomic analysis of S-nitrosylated proteins in Arabidopsis thaliana undergoing hypersensitive response.   DOI:  10.1002/pmic.200700536 ;  PMID:  18297659
• An extensive (co-)expression analysis tool for the cytochrome P450 superfamily in Arabidopsis thaliana.   DOI:  10.1186/1471-2229-8-47 ;  PMID:  18433503
• Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.   DOI:  10.1104/pp.108.121038 ;  PMID:  18650403
• Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis.   DOI:  10.1104/pp.108.124545 ;  PMID:  18633119
• Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression.   DOI:  10.1104/pp.109.152413 ;  PMID:  20118269
• In vivo phosphorylation of FtsZ2 in Arabidopsis thaliana.   DOI:  10.1042/BJ20120404 ;  PMID:  22823492
• The arabidopsis cyclic nucleotide interactome.   DOI:  10.1186/s12964-016-0133-2 ;  PMID:  27170143
• Phosphoglycerate Kinases Are Co-Regulated to Adjust Metabolism and to Optimize Growth.   DOI:  10.1104/pp.17.01227 ;  PMID:  28951489
• Pooled CRISPR/Cas9 reveals redundant roles of plastidial phosphoglycerate kinases in carbon fixation and metabolism.   DOI:  10.1111/tpj.14303 ;  PMID:  30834637
• Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method.   DOI:  10.3390/biom10040661 ;  PMID:  32344669
• Proteins associated with the Arabidopsis thaliana plastid rhomboid-like protein RBL10.   DOI:  10.1111/tpj.15514 ;  PMID:  34582071
• Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana.   DOI:  10.1074/mcp.M300030-MCP200 ;  PMID:  12766230
• Analysis of the Arabidopsis nuclear proteome and its response to cold stress.   DOI:  10.1046/j.1365-313x.2003.01907.x ;  PMID:  14617066
• Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins.   DOI:  10.1105/tpc.016055 ;  PMID:  14671022
• The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions.   DOI:  10.1016/j.cub.2004.02.039 ;  PMID:  15028209
• Evaluation of two-dimensional electrophoresis and liquid chromatography–tandem mass spectrometry for tissue-specific protein profiling of laser-microdissected plant samples.   DOI:  10.1002/elps.200410399 ;  PMID:  15971193
• Arabidopsis cell wall proteome defined using multidimensional protein identification technology.   DOI:  10.1002/pmic.200500046 ;  PMID:  16287169
• The early responses of Arabidopsis thaliana cells to cadmium exposure explored by protein and metabolite profiling analyses.   DOI:  10.1002/pmic.200500543 ;  PMID:  16502469
• High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study.   DOI:  10.1104/pp.106.080150 ;  PMID:  16648217
• The chloroplast lumen and stromal proteomes of Arabidopsis thaliana show and long-term exposure to low temperature.   DOI:  10.1111/j.1365-313X.2006.02821.x ;  PMID:  16923014
• Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques.   DOI:  10.1021/pr060525b ;  PMID:  17432890
• Proteomic analysis of S-nitrosylated proteins in Arabidopsis thaliana undergoing hypersensitive response.   DOI:  10.1002/pmic.200700536 ;  PMID:  18297659
• Identification by 2-D DIGE of apoplastic proteins regulated by oligogalacturonides in Arabidopsis thaliana.   DOI:  10.1002/pmic.200700523 ;  PMID:  18324730
• Sorting signals, N-terminal modifications and abundance of the chloroplast proteome.   DOI:  10.1371/journal.pone.0001994 ;  PMID:  18431481
• Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study.   DOI:  10.1016/j.phytochem.2008.04.007 ;  PMID:  18538804
• Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis.   DOI:  10.1104/pp.108.124545 ;  PMID:  18633119
• The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts.   DOI:  10.1074/mcp.M500180-MCP200 ;  PMID:  16207701
• Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling.   DOI:  10.1016/j.jprot.2017.06.004 ;  PMID:  28627464

Sequences: