Information report for AT3G10620
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- GO:0009507 — is active in — chloroplast
- GO:0006753 — acts upstream of or within — nucleoside phosphate metabolic process
- GO:0009507 — located in — chloroplast
- GO:0006753 — involved in — nucleoside phosphate metabolic process
- GO:0034432 — enables — bis(5-adenosyl)-pentaphosphatase activity GO:0034432 29459 F hydrolase activity IDA Enzyme assays Publication:501728657|PMID:18815383 Shigeoka 2009-02-24 AT3G10620 locus:2075840 AT3G10620 enables bis(5-adenosyl)-pentaphosphatase activity
- GO:0008893 — enables — guanosine-3,5-bis(diphosphate) 3-diphosphatase activity GO:0008893 2631 F hydrolase activity IBA none PANTHER:PTN002274534|TAIR:locus:2075840|TAIR:locus:2202487 Communication:501741973 2023-06-07 AT3G10620 locus:2075840 AT3G10620 involved in nucleoside phosphate metabolic process GO:0006753 6549 P other cellular processes IBA none PANTHER:PTN000217263|TAIR:locus:2075840|TAIR:locus:2202487|UniProtKB:Q9UKK9 Communication:501741973 2023-06-07 AT3G10620 locus:2075840 AT3G10620 acts upstream of or within nucleoside phosphate metabolic process GO:0006753 6549 P nucleobase-containing compound metabolic process IDA Enzyme assays NONE Publication:501753036|PMID:23221701 TAIR 2013-01-09 AT3G10620 locus:2075840 AT3G10620 involved in ribose phosphate metabolic process GO:0019693 10493 P other metabolic processes IBA none PANTHER:PTN000217263|SGD:S000000315|UniProtKB:Q9UKK9 Communication:501741973 2022-09-29 AT3G10620 locus:2075840 AT3G10620 involved in ribose phosphate metabolic process GO:0019693 10493 P other cellular processes IBA none PANTHER:PTN000217263|SGD:S000000315|UniProtKB:Q9UKK9 Communication:501741973 2022-09-29 AT3G10620 locus:2075840 AT3G10620 enables guanosine-3,5-bis(diphosphate) 3-diphosphatase activity
Functional Keywords
Literature and News
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- AtNUDX1, an 8-oxo-7,8-dihydro-2'-deoxyguanosine 5'-triphosphate pyrophosphohydrolase, is responsible for eliminating oxidized nucleotides in Arabidopsis. DOI: 10.1093/pcp/pcm112 ; PMID: 17804481
- Molecular characterization of organelle-type Nudix hydrolases in Arabidopsis. DOI: 10.1104/pp.108.128413 ; PMID: 18815383
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Enzymatic and molecular characterization of Arabidopsis ppGpp pyrophosphohydrolase, AtNUDX26. DOI: 10.1271/bbb.120523 ; PMID: 23221701
- A diadenosine 5',5''-P1P4 tetraphosphate (Ap4A) hydrolase from Arabidopsis thaliana that is activated preferentially by Mn2+ ions. DOI: 20081590 ; PMID: 18345354
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: A0A178VJ84
- EMBL: CACRSJ010000106, CACSHJ010000089, LUHQ01000003
- AlphaFoldDB: A0A178VJ84
- EnsemblPlants: AT3G10620.1
- Gramene: AT3G10620.1
- KEGG: ath:AT3G10620
- Orthologous matrix: PGLEWQM
- ExpressionAtlas: AT3G10620
- InterPro: IPR000086, IPR015797, IPR020084
- PANTHER: PTHR11839, PTHR11839:SF22
- SUPFAM: SSF55811
- PROSITE: PS00893, PS51462
- Gene3D: 3.90.79.10
- OrthoDB: A0A178VJ84
- SWISS-MODEL: A0A178VJ84
- Conserved Domain Database: cd03671
Sequences
cDNA Sequence
- >AT3G10620.1
GTGTAGTCTTTGTACGTAATATTCATGATGAGTCAGGGGCATAACGGTCCAGTTACTTATTAATTTCCCGAATACGTGGAAAAATAGGTTTTGGCTCGAAATGGCACTGTACCGACCCCTTCTCTTGCATCATCCAACTTCTCCGTCTGTAACTACGTTTCTACGAAATTACCCCTCGAAACCGATCAAATTCTCCAGCCTGCCCTTCCTTCATCGCTGCCGTAAGTCTCGGGTCTCCTCCTCCTCCGCTCGGTGTTGTTCTTCCATGGAATCTCCTCCTGAAGGATACAGAAGAAATGTCGGCGTCTGCCTCATGAATTCTTCCAAAAAGATTTTCACTGCCTCGAGGTTGGATATTCCCAGTGCTTGGCAAATGCCTCAGGGTGGAATCGACGAAGGTGAAGATCCAAGAGTTGCAGTCATGAGAGAGCTTAAAGAAGAGACTGGAGTTCACTCTGCTGAGATTCTCGCTGAGGCACCTCACTGGATAACCTATGACTTCCCTCCTGATGTTAGGGAGAAGCTTAAGGTCCGATGGGGATCCGATTGGAAGGGTCAAGCACAGAAATGGTTTCTTCTGAAATTTACTGGGAAAGATGAAGAAATCAATCTTCTTGGCGATGGTACTGAGAAACCTGAGTTTGGTGAATGGTCCTGGACTTCTCCTGATCAAGTCGTTGAAAATGCAGTGGAGTTCAAGAAGCCAGTGTACAAGGAAGTCATGTCAGCTTTCGCTTCTCATCTCCAGTAGCAAAATAAATCGAAAACTAAACTCTCTGTTTTAAGTTTTTCGTAAGAAACTCTGAGAATAAGCTCTTCTTGACATATTTGCTCTTTTTTGAACAATCTTTGAATCAAAATACAATTCTTGTTCCCTCTCTTGATAAAAGTAAAGTGTGAGATCCTGTCA
CDS Sequence
- >AT3G10620.1
ATGGCACTGTACCGACCCCTTCTCTTGCATCATCCAACTTCTCCGTCTGTAACTACGTTTCTACGAAATTACCCCTCGAAACCGATCAAATTCTCCAGCCTGCCCTTCCTTCATCGCTGCCGTAAGTCTCGGGTCTCCTCCTCCTCCGCTCGGTGTTGTTCTTCCATGGAATCTCCTCCTGAAGGATACAGAAGAAATGTCGGCGTCTGCCTCATGAATTCTTCCAAAAAGATTTTCACTGCCTCGAGGTTGGATATTCCCAGTGCTTGGCAAATGCCTCAGGGTGGAATCGACGAAGGTGAAGATCCAAGAGTTGCAGTCATGAGAGAGCTTAAAGAAGAGACTGGAGTTCACTCTGCTGAGATTCTCGCTGAGGCACCTCACTGGATAACCTATGACTTCCCTCCTGATGTTAGGGAGAAGCTTAAGGTCCGATGGGGATCCGATTGGAAGGGTCAAGCACAGAAATGGTTTCTTCTGAAATTTACTGGGAAAGATGAAGAAATCAATCTTCTTGGCGATGGTACTGAGAAACCTGAGTTTGGTGAATGGTCCTGGACTTCTCCTGATCAAGTCGTTGAAAATGCAGTGGAGTTCAAGAAGCCAGTGTACAAGGAAGTCATGTCAGCTTTCGCTTCTCATCTCCAGTAG
Protein Sequence
- >AT3G10620.1
MALYRPLLLHHPTSPSVTTFLRNYPSKPIKFSSLPFLHRCRKSRVSSSSARCCSSMESPPEGYRRNVGVCLMNSSKKIFTASRLDIPSAWQMPQGGIDEGEDPRVAVMRELKEETGVHSAEILAEAPHWITYDFPPDVREKLKVRWGSDWKGQAQKWFLLKFTGKDEEINLLGDGTEKPEFGEWSWTSPDQVVENAVEFKKPVYKEVMSAFASHLQ