Information report for AT3G09650
Gene Details
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Functional Descriptions
- GO:0006397 — involved in — mRNA processing
- GO:0006397 — acts upstream of or within — mRNA processing
- GO:0009570 — located in — chloroplast stroma
- GO:0003729 — enables — mRNA binding
- GO:0005737 — is active in — cytoplasm
- GO:0009507 — located in — chloroplast
Functional Keywords
Literature and News
- HCF152, an Arabidopsis RNA binding pentatricopeptide repeat protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD RNAs. DOI: 10.1105/tpc.010397 ; PMID: 12782738
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis. DOI: 10.1105/tpc.104.022236 ; PMID: 15269332
- Genome-wide gene expression analysis reveals a critical role for CRYPTOCHROME1 in the response of Arabidopsis to high irradiance. DOI: 10.1104/pp.107.098293 ; PMID: 17478635
Gene Resources
- UniProt: A0A178V9F2
- EMBL: CACRSJ010000106, CACSHJ010000089, LR881468
- AlphaFoldDB: A0A178V9F2
- EnsemblPlants: AT3G09650.1
- Gramene: AT3G09650.1
- KEGG: ath:AT3G09650
- Orthologous matrix: VCQLSYQ
- ExpressionAtlas: AT3G09650
- InterPro: IPR002885, IPR011990
- PANTHER: PTHR46598, PTHR46598:SF5
- PROSITE: PS51375
- Gene3D: 1.25.40.10
- OrthoDB: A0A178V9F2
- SWISS-MODEL: A0A178V9F2
Homologs
- Arachis hypogaea arahy.Tifrunner.gnm1.ann1.HV5MI3, arahy.Tifrunner.gnm1.ann1.HPMJ5J, arahy.Tifrunner.gnm1.ann1.QCQD61, arahy.Tifrunner.gnm1.ann1.U637CY, arahy.Tifrunner.gnm1.ann1.D88Z08
- Lupinus albus Lalb_Chr07g0185941
- Medicago truncatula Medtr1g031720
- Oryza sativa Rf4;PPR782a, FGR1;OsNPPR1, Rf1a;Rf5, YSA, RF6
- Triticum aestivum Rf3;RFL29b, Rf3
Sequences
cDNA Sequence
- >AT3G09650.1
CACACACTCTCTCTCCAATGGACCTAAAATGAACATTCTCCGACCTCCGACGTCATCATCATCTTCGTCGTTTCCTCCATACCCAAAGCCCGTTTCATTAACCCCTCCGGTATCTTTCACTCTCATCCACAACCCCATAAACCTCTGCTCTATAAACCCACCATTCACCAACGCTGGTCGACCAATTTTCCAACGGTCCGCCTCCGGCACTGCTAATAGCTCCGCCGAAGACCTCTCGTCTTTCTTGGGCTCTCCCTCAGAGGCGTATTCAACACACAACGACCAAGAGCTTTTGTTTCTCCTCCGCAATAGAAAAACCGATGAAGCTTGGGCTAAGTATGTTCAATCCACTCATCTCCCTGGACCAACTTGTCTTAGCCGTTTAGTTTCTCAATTATCTTATCAATCCAAACCCGAGAGTCTCACGCGCGCACAATCTATCCTCACGCGCCTCCGCAATGAACGCCAGCTGCATCGCCTTGACGCTAATTCCCTCGGTCTCCTCGCCATGGCTGCAGCGAAGTCTGGCCAAACACTTTACGCCGTCTCCGTCATCAAGTCCATGATTCGTTCTGGGTATTTACCTCATGTTAAAGCGTGGACAGCTGCAGTAGCTAGTCTCTCTGCTTCCGGAGATGATGGTCCGGAAGAATCTATCAAACTCTTCATCGCTATTACGCGACGAGTCAAACGATTTGGTGACCAGTCTTTGGTTGGTCAATCTAGGCCTGATACGGCGGCATTTAATGCGGTGCTTAACGCTTGTGCTAACCTTGGTGATACTGACAAGTATTGGAAGTTGTTCGAGGAAATGTCTGAGTGGGATTGTGAGCCTGATGTCTTGACTTACAATGTTATGATTAAGCTTTGTGCGAGGGTTGGTCGGAAGGAATTGATTGTGTTTGTGTTGGAAAGGATTATTGACAAGGGGATTAAGGTTTGTATGACTACAATGCATTCTCTTGTTGCAGCTTATGTTGGGTTTGGAGATTTGAGAACTGCTGAGAGGATTGTTCAAGCGATGAGGGAGAAAAGGAGAGATCTTTGTAAGGTTCTACGAGAATGCAACGCTGAGGATTTGAAGGAGAAAGAAGAGGAAGAAGCAGAAGATGATGAAGATGCGTTTGAGGATGATGAAGACTCGGGTTATTCGGCTCGGGATGAGGTAAGTGAAGAGGGGGTTGTAGATGTGTTCAAGAAATTGCTACCTAACTCGGTTGATCCGAGTGGTGAGCCACCATTGTTGCCTAAAGTCTTTGCACCAGACTCAAGGATCTACACGACGTTGATGAAAGGTTATATGAAGAATGGGCGTGTGGCAGACACAGCTAGAATGCTTGAGGCAATGAGGCGTCAAGATGATAGAAACAGTCACCCAGATGAAGTTACATACACTACGGTTGTGTCAGCTTTTGTAAATGCAGGGTTGATGGATAGAGCAAGACAAGTGTTAGCCGAGATGGCTCGGATGGGTGTTCCTGCAAATAGGATTACTTATAATGTTCTGCTCAAAGGATATTGTAAGCAGTTGCAGATAGATAGGGCAGAGGATTTACTAAGAGAGATGACTGAAGATGCGGGGATCGAGCCAGACGTGGTTTCCTATAACATTATAATAGATGGATGCATTCTTATAGATGATAGCGCAGGAGCTCTAGCGTTTTTCAATGAAATGAGAACGAGAGGGATTGCACCAACTAAGATTAGTTACACAACTTTGATGAAGGCTTTTGCAATGTCGGGGCAACCCAAGTTGGCGAATAGGGTGTTTGATGAGATGATGAATGATCCAAGGGTCAAAGTTGATTTGATCGCGTGGAACATGTTGGTTGAAGGGTACTGCAGGCTAGGTTTGATTGAGGATGCTCAGAGAGTAGTGTCAAGAATGAAAGAAAACGGGTTTTACCCAAATGTGGCAACCTATGGGAGTCTAGCCAATGGGGTTTCGCAGGCGAGGAAACCTGGTGATGCTCTCTTGCTTTGGAAGGAGATAAAGGAAAGGTGTGCGGTGAAAAAGAAAGAAGCACCTTCAGATTCTTCTTCAGATCCTGCTCCTCCGATGCTGAAACCAGATGAAGGGTTGTTAGATACACTAGCGGATATATGTGTCAGGGCTGCTTTTTTCAAGAAGGCATTGGAGATAATCGCATGTATGGAGGAGAATGGGATACCTCCGAATAAGACTAAGTACAAGAAGATCTATGTGGAGATGCACTCGAGGATGTTCACTAGCAAACATGCTTCACAAGCCAGAATAGATAGGCGGGTAGAACGAAAGAGAGCGGCTGAAGCTTTCAAGTTTTGGCTCGGTTTGCCTAATTCTTATTATGGAAGTGAATGGAAGTTAGGTCCAAGAGAAGACTAGATCAATATATTGATCAGGCTACTCTCTTATACAACAATGTATACTAGGTTCTACCGTAGTTGTAATTCAGTAGGTGTGAGTGAACAACAACATAAACATTCAACCCAAGTCCATGAGATAATACTAAGGAGTTTCTGGCATTGTGTAATATATAATTGACTGATTTTGATGATCAGGTTCATAATTAGATATGAACAATACTATTGCAATGAACATGCTAGATTTACTTAAAATGTTTCTGTTATAAAGGAAGGTTATT
CDS Sequence
- >AT3G09650.1
ATGAACATTCTCCGACCTCCGACGTCATCATCATCTTCGTCGTTTCCTCCATACCCAAAGCCCGTTTCATTAACCCCTCCGGTATCTTTCACTCTCATCCACAACCCCATAAACCTCTGCTCTATAAACCCACCATTCACCAACGCTGGTCGACCAATTTTCCAACGGTCCGCCTCCGGCACTGCTAATAGCTCCGCCGAAGACCTCTCGTCTTTCTTGGGCTCTCCCTCAGAGGCGTATTCAACACACAACGACCAAGAGCTTTTGTTTCTCCTCCGCAATAGAAAAACCGATGAAGCTTGGGCTAAGTATGTTCAATCCACTCATCTCCCTGGACCAACTTGTCTTAGCCGTTTAGTTTCTCAATTATCTTATCAATCCAAACCCGAGAGTCTCACGCGCGCACAATCTATCCTCACGCGCCTCCGCAATGAACGCCAGCTGCATCGCCTTGACGCTAATTCCCTCGGTCTCCTCGCCATGGCTGCAGCGAAGTCTGGCCAAACACTTTACGCCGTCTCCGTCATCAAGTCCATGATTCGTTCTGGGTATTTACCTCATGTTAAAGCGTGGACAGCTGCAGTAGCTAGTCTCTCTGCTTCCGGAGATGATGGTCCGGAAGAATCTATCAAACTCTTCATCGCTATTACGCGACGAGTCAAACGATTTGGTGACCAGTCTTTGGTTGGTCAATCTAGGCCTGATACGGCGGCATTTAATGCGGTGCTTAACGCTTGTGCTAACCTTGGTGATACTGACAAGTATTGGAAGTTGTTCGAGGAAATGTCTGAGTGGGATTGTGAGCCTGATGTCTTGACTTACAATGTTATGATTAAGCTTTGTGCGAGGGTTGGTCGGAAGGAATTGATTGTGTTTGTGTTGGAAAGGATTATTGACAAGGGGATTAAGGTTTGTATGACTACAATGCATTCTCTTGTTGCAGCTTATGTTGGGTTTGGAGATTTGAGAACTGCTGAGAGGATTGTTCAAGCGATGAGGGAGAAAAGGAGAGATCTTTGTAAGGTTCTACGAGAATGCAACGCTGAGGATTTGAAGGAGAAAGAAGAGGAAGAAGCAGAAGATGATGAAGATGCGTTTGAGGATGATGAAGACTCGGGTTATTCGGCTCGGGATGAGGTAAGTGAAGAGGGGGTTGTAGATGTGTTCAAGAAATTGCTACCTAACTCGGTTGATCCGAGTGGTGAGCCACCATTGTTGCCTAAAGTCTTTGCACCAGACTCAAGGATCTACACGACGTTGATGAAAGGTTATATGAAGAATGGGCGTGTGGCAGACACAGCTAGAATGCTTGAGGCAATGAGGCGTCAAGATGATAGAAACAGTCACCCAGATGAAGTTACATACACTACGGTTGTGTCAGCTTTTGTAAATGCAGGGTTGATGGATAGAGCAAGACAAGTGTTAGCCGAGATGGCTCGGATGGGTGTTCCTGCAAATAGGATTACTTATAATGTTCTGCTCAAAGGATATTGTAAGCAGTTGCAGATAGATAGGGCAGAGGATTTACTAAGAGAGATGACTGAAGATGCGGGGATCGAGCCAGACGTGGTTTCCTATAACATTATAATAGATGGATGCATTCTTATAGATGATAGCGCAGGAGCTCTAGCGTTTTTCAATGAAATGAGAACGAGAGGGATTGCACCAACTAAGATTAGTTACACAACTTTGATGAAGGCTTTTGCAATGTCGGGGCAACCCAAGTTGGCGAATAGGGTGTTTGATGAGATGATGAATGATCCAAGGGTCAAAGTTGATTTGATCGCGTGGAACATGTTGGTTGAAGGGTACTGCAGGCTAGGTTTGATTGAGGATGCTCAGAGAGTAGTGTCAAGAATGAAAGAAAACGGGTTTTACCCAAATGTGGCAACCTATGGGAGTCTAGCCAATGGGGTTTCGCAGGCGAGGAAACCTGGTGATGCTCTCTTGCTTTGGAAGGAGATAAAGGAAAGGTGTGCGGTGAAAAAGAAAGAAGCACCTTCAGATTCTTCTTCAGATCCTGCTCCTCCGATGCTGAAACCAGATGAAGGGTTGTTAGATACACTAGCGGATATATGTGTCAGGGCTGCTTTTTTCAAGAAGGCATTGGAGATAATCGCATGTATGGAGGAGAATGGGATACCTCCGAATAAGACTAAGTACAAGAAGATCTATGTGGAGATGCACTCGAGGATGTTCACTAGCAAACATGCTTCACAAGCCAGAATAGATAGGCGGGTAGAACGAAAGAGAGCGGCTGAAGCTTTCAAGTTTTGGCTCGGTTTGCCTAATTCTTATTATGGAAGTGAATGGAAGTTAGGTCCAAGAGAAGACTAG
Protein Sequence
- >AT3G09650.1
MNILRPPTSSSSSSFPPYPKPVSLTPPVSFTLIHNPINLCSINPPFTNAGRPIFQRSASGTANSSAEDLSSFLGSPSEAYSTHNDQELLFLLRNRKTDEAWAKYVQSTHLPGPTCLSRLVSQLSYQSKPESLTRAQSILTRLRNERQLHRLDANSLGLLAMAAAKSGQTLYAVSVIKSMIRSGYLPHVKAWTAAVASLSASGDDGPEESIKLFIAITRRVKRFGDQSLVGQSRPDTAAFNAVLNACANLGDTDKYWKLFEEMSEWDCEPDVLTYNVMIKLCARVGRKELIVFVLERIIDKGIKVCMTTMHSLVAAYVGFGDLRTAERIVQAMREKRRDLCKVLRECNAEDLKEKEEEEAEDDEDAFEDDEDSGYSARDEVSEEGVVDVFKKLLPNSVDPSGEPPLLPKVFAPDSRIYTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRARQVLAEMARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIIDGCILIDDSAGALAFFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWNMLVEGYCRLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSQARKPGDALLLWKEIKERCAVKKKEAPSDSSSDPAPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEENGIPPNKTKYKKIYVEMHSRMFTSKHASQARIDRRVERKRAAEAFKFWLGLPNSYYGSEWKLGPRED