Gene Details:
- Gene ID: AT3G09650
- Gene Symbol: CRM3, HCF152
- Gene Name: HIGH CHLOROPHYLL FLUORESCENCE 152
- Description: Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
- TAIR Accession: locus:2074924
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Gene Ontology:
- GO:0006397 — involved in — mRNA processing
- GO:0006397 — acts upstream of or within — mRNA processing
- GO:0009570 — located in — chloroplast stroma
- GO:0003729 — enables — mRNA binding
- GO:0005737 — is active in — cytoplasm
- GO:0009507 — located in — chloroplast
Literature:
- HCF152, an Arabidopsis RNA binding pentatricopeptide repeat protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD RNAs. DOI: 10.1105/tpc.010397 ; PMID: 12782738
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis. DOI: 10.1105/tpc.104.022236 ; PMID: 15269332
- Genome-wide gene expression analysis reveals a critical role for CRYPTOCHROME1 in the response of Arabidopsis to high irradiance. DOI: 10.1104/pp.107.098293 ; PMID: 17478635
Sequences:
cDNA Sequence
- >AT3G09650.1
CACACACTCTCTCTCCAATGGACCTAAAATGAACATTCTCCGACCTCCGACGTCATCATCATCTTCGTCGTTTCCTCCATACCCAAAGCCCGTTTCATTAACCCCTCCGGTATCTTTCACTCTCATCCACAACCCCATAAACCTCTGCTCTATAAACCCACCATTCACCAACGCTGGTCGACCAATTTTCCAACGGTCCGCCTCCGGCACTGCTAATAGCTCCGCCGAAGACCTCTCGTCTTTCTTGGGCTCTCCCTCAGAGGCGTATTCAACACACAACGACCAAGAGCTTTTGTTTCTCCTCCGCAATAGAAAAACCGATGAAGCTTGGGCTAAGTATGTTCAATCCACTCATCTCCCTGGACCAACTTGTCTTAGCCGTTTAGTTTCTCAATTATCTTATCAATCCAAACCCGAGAGTCTCACGCGCGCACAATCTATCCTCACGCGCCTCCGCAATGAACGCCAGCTGCATCGCCTTGACGCTAATTCCCTCGGTCTCCTCGCCATGGCTGCAGCGAAGTCTGGCCAAACACTTTACGCCGTCTCCGTCATCAAGTCCATGATTCGTTCTGGGTATTTACCTCATGTTAAAGCGTGGACAGCTGCAGTAGCTAGTCTCTCTGCTTCCGGAGATGATGGTCCGGAAGAATCTATCAAACTCTTCATCGCTATTACGCGACGAGTCAAACGATTTGGTGACCAGTCTTTGGTTGGTCAATCTAGGCCTGATACGGCGGCATTTAATGCGGTGCTTAACGCTTGTGCTAACCTTGGTGATACTGACAAGTATTGGAAGTTGTTCGAGGAAATGTCTGAGTGGGATTGTGAGCCTGATGTCTTGACTTACAATGTTATGATTAAGCTTTGTGCGAGGGTTGGTCGGAAGGAATTGATTGTGTTTGTGTTGGAAAGGATTATTGACAAGGGGATTAAGGTTTGTATGACTACAATGCATTCTCTTGTTGCAGCTTATGTTGGGTTTGGAGATTTGAGAACTGCTGAGAGGATTGTTCAAGCGATGAGGGAGAAAAGGAGAGATCTTTGTAAGGTTCTACGAGAATGCAACGCTGAGGATTTGAAGGAGAAAGAAGAGGAAGAAGCAGAAGATGATGAAGATGCGTTTGAGGATGATGAAGACTCGGGTTATTCGGCTCGGGATGAGGTAAGTGAAGAGGGGGTTGTAGATGTGTTCAAGAAATTGCTACCTAACTCGGTTGATCCGAGTGGTGAGCCACCATTGTTGCCTAAAGTCTTTGCACCAGACTCAAGGATCTACACGACGTTGATGAAAGGTTATATGAAGAATGGGCGTGTGGCAGACACAGCTAGAATGCTTGAGGCAATGAGGCGTCAAGATGATAGAAACAGTCACCCAGATGAAGTTACATACACTACGGTTGTGTCAGCTTTTGTAAATGCAGGGTTGATGGATAGAGCAAGACAAGTGTTAGCCGAGATGGCTCGGATGGGTGTTCCTGCAAATAGGATTACTTATAATGTTCTGCTCAAAGGATATTGTAAGCAGTTGCAGATAGATAGGGCAGAGGATTTACTAAGAGAGATGACTGAAGATGCGGGGATCGAGCCAGACGTGGTTTCCTATAACATTATAATAGATGGATGCATTCTTATAGATGATAGCGCAGGAGCTCTAGCGTTTTTCAATGAAATGAGAACGAGAGGGATTGCACCAACTAAGATTAGTTACACAACTTTGATGAAGGCTTTTGCAATGTCGGGGCAACCCAAGTTGGCGAATAGGGTGTTTGATGAGATGATGAATGATCCAAGGGTCAAAGTTGATTTGATCGCGTGGAACATGTTGGTTGAAGGGTACTGCAGGCTAGGTTTGATTGAGGATGCTCAGAGAGTAGTGTCAAGAATGAAAGAAAACGGGTTTTACCCAAATGTGGCAACCTATGGGAGTCTAGCCAATGGGGTTTCGCAGGCGAGGAAACCTGGTGATGCTCTCTTGCTTTGGAAGGAGATAAAGGAAAGGTGTGCGGTGAAAAAGAAAGAAGCACCTTCAGATTCTTCTTCAGATCCTGCTCCTCCGATGCTGAAACCAGATGAAGGGTTGTTAGATACACTAGCGGATATATGTGTCAGGGCTGCTTTTTTCAAGAAGGCATTGGAGATAATCGCATGTATGGAGGAGAATGGGATACCTCCGAATAAGACTAAGTACAAGAAGATCTATGTGGAGATGCACTCGAGGATGTTCACTAGCAAACATGCTTCACAAGCCAGAATAGATAGGCGGGTAGAACGAAAGAGAGCGGCTGAAGCTTTCAAGTTTTGGCTCGGTTTGCCTAATTCTTATTATGGAAGTGAATGGAAGTTAGGTCCAAGAGAAGACTAGATCAATATATTGATCAGGCTACTCTCTTATACAACAATGTATACTAGGTTCTACCGTAGTTGTAATTCAGTAGGTGTGAGTGAACAACAACATAAACATTCAACCCAAGTCCATGAGATAATACTAAGGAGTTTCTGGCATTGTGTAATATATAATTGACTGATTTTGATGATCAGGTTCATAATTAGATATGAACAATACTATTGCAATGAACATGCTAGATTTACTTAAAATGTTTCTGTTATAAAGGAAGGTTATT
CDS Sequence
- >AT3G09650.1
ATGAACATTCTCCGACCTCCGACGTCATCATCATCTTCGTCGTTTCCTCCATACCCAAAGCCCGTTTCATTAACCCCTCCGGTATCTTTCACTCTCATCCACAACCCCATAAACCTCTGCTCTATAAACCCACCATTCACCAACGCTGGTCGACCAATTTTCCAACGGTCCGCCTCCGGCACTGCTAATAGCTCCGCCGAAGACCTCTCGTCTTTCTTGGGCTCTCCCTCAGAGGCGTATTCAACACACAACGACCAAGAGCTTTTGTTTCTCCTCCGCAATAGAAAAACCGATGAAGCTTGGGCTAAGTATGTTCAATCCACTCATCTCCCTGGACCAACTTGTCTTAGCCGTTTAGTTTCTCAATTATCTTATCAATCCAAACCCGAGAGTCTCACGCGCGCACAATCTATCCTCACGCGCCTCCGCAATGAACGCCAGCTGCATCGCCTTGACGCTAATTCCCTCGGTCTCCTCGCCATGGCTGCAGCGAAGTCTGGCCAAACACTTTACGCCGTCTCCGTCATCAAGTCCATGATTCGTTCTGGGTATTTACCTCATGTTAAAGCGTGGACAGCTGCAGTAGCTAGTCTCTCTGCTTCCGGAGATGATGGTCCGGAAGAATCTATCAAACTCTTCATCGCTATTACGCGACGAGTCAAACGATTTGGTGACCAGTCTTTGGTTGGTCAATCTAGGCCTGATACGGCGGCATTTAATGCGGTGCTTAACGCTTGTGCTAACCTTGGTGATACTGACAAGTATTGGAAGTTGTTCGAGGAAATGTCTGAGTGGGATTGTGAGCCTGATGTCTTGACTTACAATGTTATGATTAAGCTTTGTGCGAGGGTTGGTCGGAAGGAATTGATTGTGTTTGTGTTGGAAAGGATTATTGACAAGGGGATTAAGGTTTGTATGACTACAATGCATTCTCTTGTTGCAGCTTATGTTGGGTTTGGAGATTTGAGAACTGCTGAGAGGATTGTTCAAGCGATGAGGGAGAAAAGGAGAGATCTTTGTAAGGTTCTACGAGAATGCAACGCTGAGGATTTGAAGGAGAAAGAAGAGGAAGAAGCAGAAGATGATGAAGATGCGTTTGAGGATGATGAAGACTCGGGTTATTCGGCTCGGGATGAGGTAAGTGAAGAGGGGGTTGTAGATGTGTTCAAGAAATTGCTACCTAACTCGGTTGATCCGAGTGGTGAGCCACCATTGTTGCCTAAAGTCTTTGCACCAGACTCAAGGATCTACACGACGTTGATGAAAGGTTATATGAAGAATGGGCGTGTGGCAGACACAGCTAGAATGCTTGAGGCAATGAGGCGTCAAGATGATAGAAACAGTCACCCAGATGAAGTTACATACACTACGGTTGTGTCAGCTTTTGTAAATGCAGGGTTGATGGATAGAGCAAGACAAGTGTTAGCCGAGATGGCTCGGATGGGTGTTCCTGCAAATAGGATTACTTATAATGTTCTGCTCAAAGGATATTGTAAGCAGTTGCAGATAGATAGGGCAGAGGATTTACTAAGAGAGATGACTGAAGATGCGGGGATCGAGCCAGACGTGGTTTCCTATAACATTATAATAGATGGATGCATTCTTATAGATGATAGCGCAGGAGCTCTAGCGTTTTTCAATGAAATGAGAACGAGAGGGATTGCACCAACTAAGATTAGTTACACAACTTTGATGAAGGCTTTTGCAATGTCGGGGCAACCCAAGTTGGCGAATAGGGTGTTTGATGAGATGATGAATGATCCAAGGGTCAAAGTTGATTTGATCGCGTGGAACATGTTGGTTGAAGGGTACTGCAGGCTAGGTTTGATTGAGGATGCTCAGAGAGTAGTGTCAAGAATGAAAGAAAACGGGTTTTACCCAAATGTGGCAACCTATGGGAGTCTAGCCAATGGGGTTTCGCAGGCGAGGAAACCTGGTGATGCTCTCTTGCTTTGGAAGGAGATAAAGGAAAGGTGTGCGGTGAAAAAGAAAGAAGCACCTTCAGATTCTTCTTCAGATCCTGCTCCTCCGATGCTGAAACCAGATGAAGGGTTGTTAGATACACTAGCGGATATATGTGTCAGGGCTGCTTTTTTCAAGAAGGCATTGGAGATAATCGCATGTATGGAGGAGAATGGGATACCTCCGAATAAGACTAAGTACAAGAAGATCTATGTGGAGATGCACTCGAGGATGTTCACTAGCAAACATGCTTCACAAGCCAGAATAGATAGGCGGGTAGAACGAAAGAGAGCGGCTGAAGCTTTCAAGTTTTGGCTCGGTTTGCCTAATTCTTATTATGGAAGTGAATGGAAGTTAGGTCCAAGAGAAGACTAG
Protein Sequence
- >AT3G09650.1
MNILRPPTSSSSSSFPPYPKPVSLTPPVSFTLIHNPINLCSINPPFTNAGRPIFQRSASGTANSSAEDLSSFLGSPSEAYSTHNDQELLFLLRNRKTDEAWAKYVQSTHLPGPTCLSRLVSQLSYQSKPESLTRAQSILTRLRNERQLHRLDANSLGLLAMAAAKSGQTLYAVSVIKSMIRSGYLPHVKAWTAAVASLSASGDDGPEESIKLFIAITRRVKRFGDQSLVGQSRPDTAAFNAVLNACANLGDTDKYWKLFEEMSEWDCEPDVLTYNVMIKLCARVGRKELIVFVLERIIDKGIKVCMTTMHSLVAAYVGFGDLRTAERIVQAMREKRRDLCKVLRECNAEDLKEKEEEEAEDDEDAFEDDEDSGYSARDEVSEEGVVDVFKKLLPNSVDPSGEPPLLPKVFAPDSRIYTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRARQVLAEMARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIIDGCILIDDSAGALAFFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWNMLVEGYCRLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSQARKPGDALLLWKEIKERCAVKKKEAPSDSSSDPAPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEENGIPPNKTKYKKIYVEMHSRMFTSKHASQARIDRRVERKRAAEAFKFWLGLPNSYYGSEWKLGPRED