Information report for AT3G09260
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- CS69079 — The plants do not accumulate PYK10 mRNA.
- CS69080 — The plants do not accumulate PYK10 mRNA.
- CS69081 — larger and fewer ER bodies
- CS69082 — ER bodies in bglu21-1 pyk10-1 is significantly fewer and larger than those in the wild type.
- CS69083 — ER bodies in bglu21-1 leb-1 is significantly fewer and larger than those in the wild type.
- CS72788 — less PYK10 protein; larger and fewer ER bodies
- CS72789 — larger and fewer ER bodies
- N871638 — growth of mutants is not promoted by the endophytic fungus Piriformospora indica
- leb-1 — Fewer ER bodies than WT. ER body area is larger than WT.
- pyk10-1 — Has 35% of the beta-glucosidase activity of the wild type (Col-0).
Literature and News
- Isolation of cDNA clones of genes with altered expression levels in phosphate-starved Brassica nigra suspension cells. DOI: 10.1007/BF00042071 ; PMID: 7640358
- A novel ER-derived compartment, the ER body, selectively accumulates a beta-glucosidase with an ER-retention signal in Arabidopsis. DOI: 10.1046/j.1365-313x.2003.01636.x ; PMID: 12581307
- The ER body, a novel endoplasmic reticulum-derived structure in Arabidopsis. DOI: 10.1093/pcp/pcg089 ; PMID: 12881493
- SAGE analysis of transcriptome responses in Arabidopsis roots exposed to 2,4,6-trinitrotoluene. DOI: 10.1104/pp.103.028019 ; PMID: 14551330
- Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms. DOI: 10.1105/tpc.107.050989 ; PMID: 17951448
- PYK10, a beta-glucosidase located in the endoplasmatic reticulum, is crucial for the beneficial interaction between Arabidopsis thaliana and the endophytic fungus Piriformospora indica. DOI: 10.1111/j.1365-313X.2008.03424.x ; PMID: 18248598
- Antagonistic jacalin-related lectins regulate the size of ER body-type beta-glucosidase complexes in Arabidopsis thaliana. DOI: 10.1093/pcp/pcn075 ; PMID: 18467340
- NAI2 is an endoplasmic reticulum body component that enables ER body formation in Arabidopsis thaliana. DOI: 10.1105/tpc.108.059345 ; PMID: 18780803
- Constitutive and inducible ER bodies of Arabidopsis thaliana accumulate distinct beta-glucosidases. DOI: 10.1093/pcp/pcp007 ; PMID: 19147648
- The ER body, a new organelle in Arabidopsis thaliana, requires NAI2 for its formation and accumulates specific beta-glucosidases. DOI: 10.4161/psb.4.9.9377 ; PMID: 19847124
- Quantitative analysis of ER body morphology in an Arabidopsis mutant. DOI: 10.1093/pcp/pcp157 ; PMID: 19906837
- Scopolin-hydrolyzing beta-glucosidases in roots of Arabidopsis. DOI: 10.1093/pcp/pcp174 ; PMID: 19965874
- Combining enhanced root and shoot growth reveals cross talk between pathways that control plant organ size in Arabidopsis. DOI: 10.1104/pp.110.167049 ; PMID: 21205622
- Unique defense strategy by the endoplasmic reticulum body in plants. DOI: 10.1093/pcp/pcr156 ; PMID: 22102697
- Loss of XRN4 function can trigger cosuppression in a sequence-dependent manner. DOI: 10.1093/pcp/pcs078 ; PMID: 22611176
- Identification of two novel endoplasmic reticulum body-specific integral membrane proteins. DOI: 10.1104/pp.112.207654 ; PMID: 23166355
- Proteome and metabolome profiling of cytokinin action in Arabidopsis identifying and up-regulation. DOI: 10.1093/jxb/ert227 ; PMID: 24064926
- Cell-by-cell developmental transition from embryo to post-germination phase revealed by heterochronic gene expression and ER-body formation in Arabidopsis leafy cotyledon mutants. DOI: 10.1093/pcp/pcu139 ; PMID: 25282558
- The Arabidopsis transcription factor NAI1 is required for enhancing the active histone mark but not for removing the repressive mark on PYK10, a seedling-specific gene upon embryonic-to-postgerminative developmental phase transition. DOI: 10.1080/15592324.2015.1105418 ; PMID: 26479492
- A light-sensitive mutation in Arabidopsis LEW3 reveals the important role of N-glycosylation in root growth and development. DOI: 10.1093/jxb/erx324 ; PMID: 29106622
- Leaf Endoplasmic Reticulum Bodies Identified in Arabidopsis Rosette Leaves Are Involved in Defense against Herbivory. DOI: 10.1104/pp.18.00984 ; PMID: 30696747
- A Family of NAI2-Interacting Proteins in the Biogenesis of the ER Body and Related Structures. DOI: 10.1104/pp.18.01500 ; PMID: 30770459
- Biogenesis of leaf endoplasmic reticulum body is regulated by both jasmonate-dependent and independent pathways. DOI: 10.1080/15592324.2019.1622982 ; PMID: 31132914
- The Arabidopsis transcription factor NAI1 activates the NAI2 promoter by binding to the G-box motifs. DOI: 10.1080/15592324.2020.1846928 ; PMID: 33315514
- ER Bodies Are Induced by Pseudomonas syringae and Negatively Regulate Immunity. DOI: 10.1094/MPMI-11-20-0330-SC ; PMID: 34110257
- Proteomic Analysis of Proteins Related to Defense Responses in Arabidopsis Plants Transformed with the rolB Oncogene. DOI: 10.3390/ijms24031880 ; PMID: 36768198
- Analysis of the Arabidopsis nuclear proteome and its response to cold stress. DOI: 10.1046/j.1365-313x.2003.01907.x ; PMID: 14617066
- The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. DOI: 10.1105/tpc.104.027078 ; PMID: 15539469
- Proteomic survey of copper-binding proteins in Arabidopsis roots by immobilized metal affinity chromatography and mass spectrometry. DOI: 10.1002/pmic.200500108 ; PMID: 16526091
- Functional characterization of a glycine-rich RNA-binding protein 2 in Arabidopsis thaliana under abiotic stress conditions. DOI: 10.1111/j.1365-313X.2007.03057.x ; PMID: 17376161
- Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques. DOI: 10.1021/pr060525b ; PMID: 17432890
- Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms. DOI: 10.1105/tpc.107.050989 ; PMID: 17951448
- Comparative proteomic analysis of NaCl stress-responsive proteins in Arabidopsis roots. DOI: 10.1093/jxb/erm207 ; PMID: 17916636
- PYK10, a beta-glucosidase located in the endoplasmatic reticulum, is crucial for the beneficial interaction between Arabidopsis thaliana and the endophytic fungus Piriformospora indica. DOI: 10.1111/j.1365-313X.2008.03424.x ; PMID: 18248598
- Identification by 2-D DIGE of apoplastic proteins regulated by oligogalacturonides in Arabidopsis thaliana. DOI: 10.1002/pmic.200700523 ; PMID: 18324730
Gene Resources
- UniProt: A0A178VCN3
- EMBL: CACRSJ010000106, CACSHJ010000089, LUHQ01000003
- AlphaFoldDB: A0A178VCN3
- EnsemblPlants: AT3G09260.1
- Gramene: AT3G09260.1
- KEGG: ath:AT3G09260
- Orthologous matrix: DMFRIME
- ExpressionAtlas: AT3G09260
- InterPro: IPR001360, IPR017853, IPR033132
- PANTHER: PTHR10353, PTHR10353:SF266
- SUPFAM: SSF51445
- PROSITE: PS00653
- Gene3D: 3.20.20.80
- OrthoDB: A0A178VCN3
- SWISS-MODEL: A0A178VCN3
Homologs
Sequences
cDNA Sequence
- >AT3G09260.1
AGAACCATCCTAAACATTTTTTCTTGAATAAAATCAGAATTACAAACAAAAATGGTTTTGCAAAAGCTTCCTCTCATTGGGCTGCTTTTGCTCCTGACCATCGTCGCCTCTCCAGCAAATGCAGATGGACCTGTTTGCCCGCCGTCGAACAAACTAAGCCGGGCAAGTTTCCCTGAAGGTTTTTTATTTGGCACGGCTACTGCGGCATACCAGGTCGAAGGTGCGATTAATGAAACTTGTCGTGGACCAGCCTTATGGGACATCTACTGTAGAAGATATCCAGAGAGGTGCAATAACGATAACGGCGATGTGGCCGTTGATTTCTTCCATCGTTATAAGGAAGATATCCAACTAATGAAGAATCTAAACACAGACGCCTTTAGAATGTCTATCGCATGGCCAAGAATATTTCCTCATGGGAGAAAGGAGAAAGGAGTGAGTCAAGCTGGTGTGCAATTCTACCACGACCTCATCGACGAGCTCATAAAAAATGGTATAACTCCATTCGTTACTGTTTTTCACTGGGACACTCCACAAGATTTAGAAGATGAATATGGCGGCTTTTTAAGCGAAAGGATTGTGAAGGATTTCCGAGAGTATGCAGATTTTGTTTTCCAAGAATACGGTGGAAAAGTGAAACATTGGATCACTTTCAATGAGCCATGGGTTTTCTCGCACGCTGGCTATGACGTAGGCAAAAAGGCACCTGGTCGTTGCTCTTCTTACGTCAATGCTAAATGCCAAGACGGACGATCAGGATACGAGGCTTACCTTGTCACTCACAATCTCCTTATCTCTCACGCAGAAGCAGTTGAAGCTTACCGGAAATGCGAAAAGTGTAAAGGTGGGAAGATCGGAATTGCACATAGTCCTGCTTGGTTCGAAGCACATGACCTTGCTGATTCACAAGACGGTGCGTCCATCGACCGTGCACTTGACTTTATTTTGGGATGGCATCTAGACACAACTACATTTGGAGATTATCCACAGATCATGAAAGACATTGTTGGACATAGATTGCCTAAATTTACAACTGAGCAGAAAGCAAAACTGAAAGCTTCTACCGATTTCGTTGGGCTCAACTACTATACTTCAGTGTTTTCAAACCATTTGGAGAAACCTGATCCTTCAAAACCAAGATGGATGCAAGATTCTCTTATTACATGGGAGTCTAAGAATGCGCAAAATTACGCCATTGGTAGCAAGCCTTTGACCGCTGCATTGAACGTTTACTCGAGAGGTTTTAGAAGTCTGTTGAAGTACATTAAGGACAAATACGCAAATCCGGAAATTATGATCATGGAAAACGGATATGGAGAAGAACTAGGGGCCTCAGATTCTGTTGCTGTTGGTACCGCTGATCATAACAGGAAATATTATCTTCAGAGGCATCTTTTGAGTATGCAAGAAGCTGTTTGCATCGACAAAGTGAATGTTACAGGATACTTTGTATGGTCATTGTTGGATAACTTCGAGTGGCAAGATGGTTACAAAAACAGATTTGGACTCTACTACGTTGATTTCAAAAATAACCTCACACGTTACGAGAAAGAATCCGGCAAGTATTACAAGGATTTCCTCAGTCAAGGTGTTCGTCCATCCGCGCTCAAGAAGGATGAGCTTTAAGCTATTTCTGTTTCAATGTGTTTTTCCTATGTTTTACTTTGTGAGTGACCAAGATTCATGAGGTCTTGGTTCTAATAAAAAGAGTTTATTTTTCTTCTCATTTTTCATTGTCTACATGATTTGCCAGATCTACAAGGCTCTGGTTATAATAAAATGATCCTTTGTGCCTCTTCTAGTACA
CDS Sequence
- >AT3G09260.1
ATGGTTTTGCAAAAGCTTCCTCTCATTGGGCTGCTTTTGCTCCTGACCATCGTCGCCTCTCCAGCAAATGCAGATGGACCTGTTTGCCCGCCGTCGAACAAACTAAGCCGGGCAAGTTTCCCTGAAGGTTTTTTATTTGGCACGGCTACTGCGGCATACCAGGTCGAAGGTGCGATTAATGAAACTTGTCGTGGACCAGCCTTATGGGACATCTACTGTAGAAGATATCCAGAGAGGTGCAATAACGATAACGGCGATGTGGCCGTTGATTTCTTCCATCGTTATAAGGAAGATATCCAACTAATGAAGAATCTAAACACAGACGCCTTTAGAATGTCTATCGCATGGCCAAGAATATTTCCTCATGGGAGAAAGGAGAAAGGAGTGAGTCAAGCTGGTGTGCAATTCTACCACGACCTCATCGACGAGCTCATAAAAAATGGTATAACTCCATTCGTTACTGTTTTTCACTGGGACACTCCACAAGATTTAGAAGATGAATATGGCGGCTTTTTAAGCGAAAGGATTGTGAAGGATTTCCGAGAGTATGCAGATTTTGTTTTCCAAGAATACGGTGGAAAAGTGAAACATTGGATCACTTTCAATGAGCCATGGGTTTTCTCGCACGCTGGCTATGACGTAGGCAAAAAGGCACCTGGTCGTTGCTCTTCTTACGTCAATGCTAAATGCCAAGACGGACGATCAGGATACGAGGCTTACCTTGTCACTCACAATCTCCTTATCTCTCACGCAGAAGCAGTTGAAGCTTACCGGAAATGCGAAAAGTGTAAAGGTGGGAAGATCGGAATTGCACATAGTCCTGCTTGGTTCGAAGCACATGACCTTGCTGATTCACAAGACGGTGCGTCCATCGACCGTGCACTTGACTTTATTTTGGGATGGCATCTAGACACAACTACATTTGGAGATTATCCACAGATCATGAAAGACATTGTTGGACATAGATTGCCTAAATTTACAACTGAGCAGAAAGCAAAACTGAAAGCTTCTACCGATTTCGTTGGGCTCAACTACTATACTTCAGTGTTTTCAAACCATTTGGAGAAACCTGATCCTTCAAAACCAAGATGGATGCAAGATTCTCTTATTACATGGGAGTCTAAGAATGCGCAAAATTACGCCATTGGTAGCAAGCCTTTGACCGCTGCATTGAACGTTTACTCGAGAGGTTTTAGAAGTCTGTTGAAGTACATTAAGGACAAATACGCAAATCCGGAAATTATGATCATGGAAAACGGATATGGAGAAGAACTAGGGGCCTCAGATTCTGTTGCTGTTGGTACCGCTGATCATAACAGGAAATATTATCTTCAGAGGCATCTTTTGAGTATGCAAGAAGCTGTTTGCATCGACAAAGTGAATGTTACAGGATACTTTGTATGGTCATTGTTGGATAACTTCGAGTGGCAAGATGGTTACAAAAACAGATTTGGACTCTACTACGTTGATTTCAAAAATAACCTCACACGTTACGAGAAAGAATCCGGCAAGTATTACAAGGATTTCCTCAGTCAAGGTGTTCGTCCATCCGCGCTCAAGAAGGATGAGCTTTAA
Protein Sequence
- >AT3G09260.1
MVLQKLPLIGLLLLLTIVASPANADGPVCPPSNKLSRASFPEGFLFGTATAAYQVEGAINETCRGPALWDIYCRRYPERCNNDNGDVAVDFFHRYKEDIQLMKNLNTDAFRMSIAWPRIFPHGRKEKGVSQAGVQFYHDLIDELIKNGITPFVTVFHWDTPQDLEDEYGGFLSERIVKDFREYADFVFQEYGGKVKHWITFNEPWVFSHAGYDVGKKAPGRCSSYVNAKCQDGRSGYEAYLVTHNLLISHAEAVEAYRKCEKCKGGKIGIAHSPAWFEAHDLADSQDGASIDRALDFILGWHLDTTTFGDYPQIMKDIVGHRLPKFTTEQKAKLKASTDFVGLNYYTSVFSNHLEKPDPSKPRWMQDSLITWESKNAQNYAIGSKPLTAALNVYSRGFRSLLKYIKDKYANPEIMIMENGYGEELGASDSVAVGTADHNRKYYLQRHLLSMQEAVCIDKVNVTGYFVWSLLDNFEWQDGYKNRFGLYYVDFKNNLTRYEKESGKYYKDFLSQGVRPSALKKDEL