Information report for AT3G08940
Gene Details
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Functional Descriptions
- GO:0009941 — located in — chloroplast envelope
- GO:0009535 — located in — chloroplast thylakoid membrane
- GO:0009579 — located in — thylakoid
- GO:0009507 — located in — chloroplast
- GO:0009534 — located in — chloroplast thylakoid
- GO:0016168 — enables — chlorophyll binding
- GO:0009768 — involved in — photosynthesis, light harvesting in photosystem I
- GO:0009416 — involved in — response to light stimulus
- GO:0005829 — located in — cytosol
- GO:0003729 — enables — mRNA binding
Functional Keywords
Literature and News
- A guide to the Lhc genes and their relatives in Arabidopsis/IT>. DOI: 10.1016/s1360-1385(99)01419-3 ; PMID: 10366881
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. DOI: 10.1105/tpc.017814 ; PMID: 14729914
- The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. DOI: 10.1186/1471-2229-4-10 ; PMID: 15171794
- Proteomic approach to characterize the supramolecular organization of photosystems in higher plants. DOI: 10.1016/j.phytochem.2004.04.022 ; PMID: 15276430
- New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. DOI: 10.1074/jbc.M406763200 ; PMID: 15322131
- GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. DOI: 10.1104/pp.104.046367 ; PMID: 15375207
- Retrograde plastid redox signals in the expression of nuclear genes for chloroplast proteins of Arabidopsis thaliana. DOI: 10.1074/jbc.M406358200 ; PMID: 15561727
- The cold-induced early activation of phospholipase C and D pathways determines the response of two distinct clusters of genes in Arabidopsis cell suspensions. DOI: 10.1104/pp.105.068171 ; PMID: 16258011
- A coumaroyl-ester-3-hydroxylase insertion mutant reveals the existence of nonredundant meta-hydroxylation pathways and essential roles for phenolic precursors in cell expansion and plant growth. DOI: 10.1104/pp.105.069690 ; PMID: 16377748
- Monitoring expression profiles of Arabidopsis genes during cold acclimation and deacclimation using DNA microarrays. DOI: 10.1007/s10142-005-0014-z ; PMID: 16463051
- Nuclear photosynthetic gene expression is synergistically modulated by rates of protein synthesis in chloroplasts and mitochondria. DOI: 10.1105/tpc.105.039073 ; PMID: 16517761
- The heavy metal hyperaccumulator Thlaspi caerulescens expresses many species-specific genes, as identified by comparative expressed sequence tag analysis. DOI: 10.1111/j.1469-8137.2006.01714.x ; PMID: 16684236
- Characterization of an Arabidopsis thaliana mutant lacking a cytosolic non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase. DOI: 10.1007/s11103-006-0060-5 ; PMID: 16927206
- State transitions revisited-a buffering system for dynamic low light acclimation of Arabidopsis. DOI: 10.1007/s11103-006-9044-8 ; PMID: 16897465
- Functional architecture of the major light-harvesting complex from higher plants. DOI: 10.1006/jmbi.2000.5179 ; PMID: 11743731
- PIC1, an ancient permease in Arabidopsis chloroplasts, mediates iron transport. DOI: 10.1105/tpc.106.047407 ; PMID: 17337631
- On the functions of the h subunit of eukaryotic initiation factor 3 in late stages of translation initiation. DOI: 10.1186/gb-2007-8-4-r60 ; PMID: 17439654
- Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques. DOI: 10.1021/pr060525b ; PMID: 17432890
- Light has a specific role in modulating Arabidopsis gene expression at low temperature. DOI: 10.1186/1471-2229-8-13 ; PMID: 18230142
- Genome-wide expression profiling Arabidopsis at the stage of Golovinomyces cichoracearum haustorium formation. DOI: 10.1104/pp.107.111286 ; PMID: 18218973
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. DOI: 10.1104/pp.108.124545 ; PMID: 18633119
- Unique and overlapping expression patterns among members of photosynthesis-associated nuclear gene families in Arabidopsis. DOI: 10.1104/pp.108.126946 ; PMID: 18820083
- Site-directed spin-labeling study of the light-harvesting complex CP29. DOI: 10.1016/j.bpj.2009.01.038 ; PMID: 19413967
- High light induced disassembly of photosystem II supercomplexes in Arabidopsis requires STN7-dependent phosphorylation of CP29. DOI: 10.1371/journal.pone.0024565 ; PMID: 21915352
- Arabidopsis mutants deleted in the light-harvesting protein Lhcb4 have a disrupted photosystem II macrostructure and are defective in photoprotection. DOI: 10.1105/tpc.111.087320 ; PMID: 21803939
- Proteome and metabolome profiling of cytokinin action in Arabidopsis identifying and up-regulation. DOI: 10.1093/jxb/ert227 ; PMID: 24064926
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Loss of a single chlorophyll in CP29 triggers re-organization of the Photosystem II supramolecular assembly. DOI: 10.1016/j.bbabio.2022.148555 ; PMID: 35378087
- Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. DOI: 10.1021/pr034025j ; PMID: 12938931
- In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. DOI: 10.1105/tpc.017814 ; PMID: 14729914
- The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. DOI: 10.1016/j.cub.2004.02.039 ; PMID: 15028209
- New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. DOI: 10.1074/jbc.M406763200 ; PMID: 15322131
- Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques. DOI: 10.1021/pr060525b ; PMID: 17432890
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
- Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. DOI: 10.1021/pr034025j ; PMID: 12938931
- In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. DOI: 10.1105/tpc.017814 ; PMID: 14729914
- The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. DOI: 10.1016/j.cub.2004.02.039 ; PMID: 15028209
- New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. DOI: 10.1074/jbc.M406763200 ; PMID: 15322131
- Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques. DOI: 10.1021/pr060525b ; PMID: 17432890
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
- Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. DOI: 10.1104/pp.108.124545 ; PMID: 18633119
Gene Resources
Homologs
- Brachypodium distachyon Bradi3g42627.4.p, Bradi3g42627.3.p, Bradi3g42627.5.p
- Glycine max GmLHCa2
- Oryza sativa CP29;OsLhcb4, OsCAB1R, CAB2R;OsLhcp, CP24, Lhca4;DYE1, LHCB;LHCPII
Sequences
cDNA Sequence
- >AT3G08940.2
GATTTTGTTTCCTACCGTCAGATGGATTTGTTTCTCCATCTAACCGTCAAGATTCGTTCTCTGAGATCTCTCCCACACACATACCGCCACTTAAAAACGCCATTTGCTTCAGATAAGTTACAAACCGCAAACGCGACAGAACTAACTAACGACGCCGGAGATGGCCGCCACTTCAACCGCCGCTGCTGCTTCTTCAATCATGGGTACCCGGGTGGTTTCCGACATTAGCTCCAATTCAAGCCGGTTCACAGCCCGGTTCGGATTCGGAACCAAGAAAGCATCTCCCAAAAAGGCTAAGACGGTTATCTCAGACCGGCCTCTATGGTTCCCAGGCGCAAAATCACCCGAATATCTCGACGGTTCACTTGTCGGGGACTACGGGTTCGATCCTTTTGGTTTAGGCAAACCGGCGGAGTATCTCCAATTCGATTTGGATTCCTTGGACCAGAACTTAGCCAAGAACTTATACGGAGAAGTGATCGGGACTCGTACCGAGGCGGTGGACCCCAAATCGACGCCGTTTCAGCCATATAGTGAAGTCTTCGGGCTACAAAGATTCAGAGAATGTGAGCTGATTCACGGTCGGTGGGCAATGCTCGCCACTCTTGGCGCTATCACCGTCGAATGGCTCACCGGTGTTACTTGGCAAGACGCCGGCAAGGTAGAGCTAGTGGATGGATCATCTTACTTAGGACAGCCATTGCCGTTCTCTATCTCGACATTGATATGGATCGAAGTGTTAGTGATCGGCTACATTGAGTTCCAACGAAACGCTGAACTGGACTCGGAGAAGCGTTTGTATCCAGGAGGCAAGTTCTTTGACCCGTTAGGACTAGCGTCTGACCCGGTGAAGAAGGCTCAGCTTCAGCTAGCTGAGATCAAACATGCTCGTTTAGCCATGGTTGGATTCTTGGGTTTTGCGGTTCAGGCGGCTGCAACCGGTAAAGGACCGCTCAACAACTGGGCGACTCACCTTAGTGACCCACTTCACACCACCATTATCGATACCTTCTCTTCCTCCTGATGTGGTGGCTTTTAGCTTCTACTGGTGTCATGTAATGATGTGGTGGCTTTTAGCTTCTACTGGTGTCATGTAATGATGTAACGTCGTTATTTTAAAGAAAATTTGGCACCTTTTGTATAAACGGAATTTCTTATACCTCGCAGTTTGTGTTTACGTAGATCATCGGAGTTATGATGAGCCTTTACATCAAATTAATCGTTTGCTAAATTCTGTCGAAATTGTTCACGTTAAGAAACATAGAATCATAAAGTTGACTCA - >AT3G08940.1
GATTTTGTTTCCTACCGTCAGATGGATTTGTTTCTCCATCTAACCGTCAAGATTCGTTCTCTGAGATCTCTCCCACACACATACCGCCACTTAAAAACGCCATTTGCTTCAGATAAGTTACAAACCGCAAACGCGACAGAACTAACTAACGACGCCGGAGATGGCCGCCACTTCAACCGCCGCTGCTGCTTCTTCAATCATGGGTACCCGGGTGGTTTCCGACATTAGCTCCAATTCAAGCCGGTTCACAGCCCGGTTCGGATTCGGAACCAAGAAAGCATCTCCCAAAAAGGCTAAGACGGTTATCTCAGACCGGCCTCTATGGTTCCCAGGCGCAAAATCACCCGAATATCTCGACGGTTCACTTGTCGGGGACTACGGGTTCGATCCTTTTGGTTTAGGCAAACCGGCGGAGTATCTCCAATTCGATTTGGATTCCTTGGACCAGAACTTAGCCAAGAACTTATACGGAGAAGTGATCGGGACTCGTACCGAGGCGGTGGACCCCAAATCGACGCCGTTTCAGCCATATAGTGAAGTCTTCGGGCTACAAAGATTCAGAGAATGTGAGCTGATTCACGGTCGGTGGGCAATGCTCGCCACTCTTGGCGCTATCACCGTCGAATGGCTCACCGGTGTTACTTGGCAAGACGCCGGCAAGGTAGAGCTAGTGGATGGATCATCTTACTTAGGACAGCCATTGCCGTTCTCTATCTCGACATTGATATGGATCGAAGTGTTAGTGATCGGCTACATTGAGTTCCAACGAAACGCTGAACTGGACTCGGAGAAGCGTTTGTATCCAGGAGGCAAGTTCTTTGACCCGTTAGGACTAGCGTCTGACCCGGTGAAGAAGGCTCAGCTTCAGCTAGCTGAGATCAAACATGCTCGTTTAGCCATGGTTGGATTCTTGGGTTTTGCGGTTCAGGCGGCTGCAACCGGTAAAGGACCGCTCAACAACTGGGCGACTCACCTTAGTGACCCACTTCACACCACCATTATCGATACCTTCTCTTCCTCCTGATGTGGTGGCTTTTAGCTTCTACTGGTGTCATGTAATGATGTGGTGGCTTTTAGCTTCTACTGGTGTCATGTAATGATGTAACGTCGTTATTTTAAAGAAAATTTGGCACCTTTTGTATAAACGGAATTTCTTATACCTCGCAGTTTGTGTTTACGTAGATCATCGGAGTTATGATGAGCCTTTACATCAAATTAATCGTTTGCTAAATTCTGTCGAAATTGTTCACGTTAAGAAACATAGAATCATAAAGTTGACTCA
CDS Sequence
- >AT3G08940.2
ATGGCCGCCACTTCAACCGCCGCTGCTGCTTCTTCAATCATGGGTACCCGGGTGGTTTCCGACATTAGCTCCAATTCAAGCCGGTTCACAGCCCGGTTCGGATTCGGAACCAAGAAAGCATCTCCCAAAAAGGCTAAGACGGTTATCTCAGACCGGCCTCTATGGTTCCCAGGCGCAAAATCACCCGAATATCTCGACGGTTCACTTGTCGGGGACTACGGGTTCGATCCTTTTGGTTTAGGCAAACCGGCGGAGTATCTCCAATTCGATTTGGATTCCTTGGACCAGAACTTAGCCAAGAACTTATACGGAGAAGTGATCGGGACTCGTACCGAGGCGGTGGACCCCAAATCGACGCCGTTTCAGCCATATAGTGAAGTCTTCGGGCTACAAAGATTCAGAGAATGTGAGCTGATTCACGGTCGGTGGGCAATGCTCGCCACTCTTGGCGCTATCACCGTCGAATGGCTCACCGGTGTTACTTGGCAAGACGCCGGCAAGGTAGAGCTAGTGGATGGATCATCTTACTTAGGACAGCCATTGCCGTTCTCTATCTCGACATTGATATGGATCGAAGTGTTAGTGATCGGCTACATTGAGTTCCAACGAAACGCTGAACTGGACTCGGAGAAGCGTTTGTATCCAGGAGGCAAGTTCTTTGACCCGTTAGGACTAGCGTCTGACCCGGTGAAGAAGGCTCAGCTTCAGCTAGCTGAGATCAAACATGCTCGTTTAGCCATGGTTGGATTCTTGGGTTTTGCGGTTCAGGCGGCTGCAACCGGTAAAGGACCGCTCAACAACTGGGCGACTCACCTTAGTGACCCACTTCACACCACCATTATCGATACCTTCTCTTCCTCCTGA - >AT3G08940.1
ATGGCCGCCACTTCAACCGCCGCTGCTGCTTCTTCAATCATGGGTACCCGGGTGGTTTCCGACATTAGCTCCAATTCAAGCCGGTTCACAGCCCGGTTCGGATTCGGAACCAAGAAAGCATCTCCCAAAAAGGCTAAGACGGTTATCTCAGACCGGCCTCTATGGTTCCCAGGCGCAAAATCACCCGAATATCTCGACGGTTCACTTGTCGGGGACTACGGGTTCGATCCTTTTGGTTTAGGCAAACCGGCGGAGTATCTCCAATTCGATTTGGATTCCTTGGACCAGAACTTAGCCAAGAACTTATACGGAGAAGTGATCGGGACTCGTACCGAGGCGGTGGACCCCAAATCGACGCCGTTTCAGCCATATAGTGAAGTCTTCGGGCTACAAAGATTCAGAGAATGTGAGCTGATTCACGGTCGGTGGGCAATGCTCGCCACTCTTGGCGCTATCACCGTCGAATGGCTCACCGGTGTTACTTGGCAAGACGCCGGCAAGGTAGAGCTAGTGGATGGATCATCTTACTTAGGACAGCCATTGCCGTTCTCTATCTCGACATTGATATGGATCGAAGTGTTAGTGATCGGCTACATTGAGTTCCAACGAAACGCTGAACTGGACTCGGAGAAGCGTTTGTATCCAGGAGGCAAGTTCTTTGACCCGTTAGGACTAGCGTCTGACCCGGTGAAGAAGGCTCAGCTTCAGCTAGCTGAGATCAAACATGCTCGTTTAGCCATGGTTGGATTCTTGGGTTTTGCGGTTCAGGCGGCTGCAACCGGTAAAGGACCGCTCAACAACTGGGCGACTCACCTTAGTGACCCACTTCACACCACCATTATCGATACCTTCTCTTCCTCCTGA
Protein Sequence
- >AT3G08940.2
MAATSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS - >AT3G08940.1
MAATSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS