Information report for AT3G08620
Gene Details
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Functional Descriptions
- GO:0048024 — involved in — regulation of mRNA splicing, via spliceosome
- GO:0005739 — located in — mitochondrion
- GO:0005634 — located in — nucleus
- GO:0003729 — enables — mRNA binding
- GO:0005634 — is active in — nucleus
Functional Keywords
Literature and News
- Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana. DOI: 10.1093/nar/30.3.623 ; PMID: 11809873
- Genome-Wide Characterization and Expression Analysis of KH Family Genes Response to ABA and SA in Arabidopsis thaliana. DOI: 10.3390/ijms23010511 ; PMID: 35008936
Gene Resources
- UniProt: A0A1I9LT54
- EMBL: CP002686
- AlphaFoldDB: A0A1I9LT54
- EnsemblPlants: AT3G08620.2
- Gramene: AT3G08620.2
- Orthologous matrix: NVMSNVG
- ExpressionAtlas: AT3G08620
- InterPro: IPR004087, IPR036612, IPR045071
- PANTHER: PTHR11208, PTHR11208:SF92
- SUPFAM: SSF54791
- PROSITE: PS50084
- Gene3D: 3.30.1370.10
- OrthoDB: A0A1I9LT54
- SWISS-MODEL: A0A1I9LT54
Homologs
- Brassica napus BnaC05G0510400ZS, BnaC04G0079700ZS
- Brassica oleracea Bo01576s030, Bo4g027130
- Capsicum annuum T459_23685
- Juglans regia Jr03_27350, Jr04_00290
- Lactuca sativa gene-LSAT_8X109621
- Manihot esculenta MANES_09G121700, MANES_08G168100
- Nicotiana attenuata A4A49_22976
- Populus trichocarpa POPTR_006G111400v3
- Prunus avium Pav_sc0002318.1_g510.1.mk
- Prunus persica PRUPE_6G297700
- Rosa chinensis RchiOBHm_Chr3g0459891
- Sesamum indicum SIN_1010970
- Solanum lycopersicum Solyc09g031930.3
Sequences
cDNA Sequence
- >AT3G08620.2
TGTTTTTTGCTCGTTTTCTGCAGTCAATACATATCTCAGTTGTTAGCAGAGCATCAAAAGCTTGGACCTTTCATGCAAGTCTTACCCATTTGTAGCCGACTCTTAAATCAAGAAATTTTCCGGATCACCGGAATGATGCCCAACCAAGGATTTACCGATTTTGATAGGTTACGGCATCGAAGTCCTAGTCCAATGGCTTCACCAAATCTTATGTCTAATGTTTCCGGTGGTGGATTAGGTGGTTGGAATGGTCTTCCACCAGAGAGAATTGGTGGTCCTCATGGAATGGCAATGGAGTGGCAAGGTGCGCCAGCTAGCCCAAGTTCATACCCAGTGAAGCGTATTTTGCGTTTAGATCTTCCAGTTGATACCTATCCGAATTTCAATTTTGTTGGAAGGCTTCTGGGTCCTAGAGGGAATTCATTAAAGCGTGTGGAAGCAACTACGGGTTGCCGTGTGTATATTAGAGGGAAAGGATCAATTAAGGATCCTGAAAAAGAAGAGAAACTGAAAGGGAAGCCTGGCTATGAGCATCTCAATGAGCAGTTGCATATCCTCATTGAGGCTGATCTTCCAATTGATATTGTGGATATAAAGCTGCGGCAGGCCCAAGAAATAATCGAGGAGTTGGTCAAGCCTGTGGATGAGTCGCAGGATTACATCAAGAGGCAGCAGTTGCGAGAGCTAGCGTTGCTGAATTCAAACTTGAGAGAAAACAGCCCAGGACCAAGCGGTAGTGTCTCTCCTTTCAATTCAAATGCAATGAAACGCCCAAAAACAGGGCGTTAAGAGCTTGAGAGATCCTAGATAAAAATTATGTGCATATGTGTATAACTGGCCTAATGGTGTTGGTTGAGTCTGCTCTTGGTTCTTCTGCTTACCCTCTGATCCACACACTGATGCTTATACACAAAGCACCAAGAGAACAGTTTCCTCCTTGACCGGGGTTTGATGCATTGTAACCATCAAAGATATTAGATAATTTGGATTTATTCATGTGTTGAAGTAGTTGTATTCTTGACTTTGGAATGGAGATCTAGTTACATGTATATGTGGATAGATAGATACCTTACCAAT - >AT3G08620.1
TGTTTTTTGCTCGTTTTCTGCAGTCAATACATATCTCAGTTGTTAGCAGAGCATCAAAAGCTTGGACCTTTCATGCAAGTCTTACCCATTTGTAGCCGACTCTTAAATCAAGAAATTTTCCGGATCACCGGAATGATGCCCAACCAAGGATTTACCGATTTTGATAGGTTACGGCATCGAAGTCCTAGTCCAATGGCTTCACCAAATCTTATGTCTAATGTTTCCGGTGGTGGATTAGGTGGTTGGAATGGTCTTCCACCAGAGAGAATTGGTGGTCCTCATGGAATGGCAATGGAGTGGCAAGGTGCGCCAGCTAGCCCAAGTTCATACCCAGTGAAGCGTATTTTGCGTTTAGATCTTCCAGTTGATACCTATCCGAATTTCAATTTTGTTGGAAGGCTTCTGGGTCCTAGAGGGAATTCATTAAAGCGTGTGGAAGCAACTACGGGTTGCCGTGTGTATATTAGAGGGAAAGGATCAATTAAGGATCCTGAAAAAGAAGAGAAACTGAAAGGGAAGCCTGGCTATGAGCATCTCAATGAGCAGTTGCATATCCTCATTGAGGCTGATCTTCCAATTGATATTGTGGATATAAAGCTGCGGCAGGCCCAAGAAATAATCGAGGAGTTGGTCAAGCCTGTGGATGAGTCGCAGGATTACATCAAGAGGCAGCAGTTGCGAGAGCTAGCGTTGCTGAATTCAAACTTGAGAGAAAACAGCCCAGGACCAAGCGGTAGTGTCTCTCCTTTCAATTCAAATGCAATGAAACGCCCAAAAACAGGGCGTTAAGAGCTTGAGAGATCCTAGATAAAAATTATGTGCATATGTGTATAACTGGCCTAATGGTGTTGGTTGAGTCTGCTCTTGGTTCTTCTGCTTACCCTCTGATCCACACACTGATGCTTATACACAAAGCACCAAGAGAACAGTTTCCTCCTTGACCGGGGTTTGATGCATTGTAACCATCAAAGATATTAGATAATTTGGATTTATTCATGTGTTGAAGTAGTTGTATTCTTGACTTTGGAATGGAGATCTAGTTACATGTATATGTGGATAGATAGATACCTTACCAAT
CDS Sequence
- >AT3G08620.2
ATGCAAGTCTTACCCATTTGTAGCCGACTCTTAAATCAAGAAATTTTCCGGATCACCGGAATGATGCCCAACCAAGGATTTACCGATTTTGATAGGTTACGGCATCGAAGTCCTAGTCCAATGGCTTCACCAAATCTTATGTCTAATGTTTCCGGTGGTGGATTAGGTGGTTGGAATGGTCTTCCACCAGAGAGAATTGGTGGTCCTCATGGAATGGCAATGGAGTGGCAAGGTGCGCCAGCTAGCCCAAGTTCATACCCAGTGAAGCGTATTTTGCGTTTAGATCTTCCAGTTGATACCTATCCGAATTTCAATTTTGTTGGAAGGCTTCTGGGTCCTAGAGGGAATTCATTAAAGCGTGTGGAAGCAACTACGGGTTGCCGTGTGTATATTAGAGGGAAAGGATCAATTAAGGATCCTGAAAAAGAAGAGAAACTGAAAGGGAAGCCTGGCTATGAGCATCTCAATGAGCAGTTGCATATCCTCATTGAGGCTGATCTTCCAATTGATATTGTGGATATAAAGCTGCGGCAGGCCCAAGAAATAATCGAGGAGTTGGTCAAGCCTGTGGATGAGTCGCAGGATTACATCAAGAGGCAGCAGTTGCGAGAGCTAGCGTTGCTGAATTCAAACTTGAGAGAAAACAGCCCAGGACCAAGCGGTAGTGTCTCTCCTTTCAATTCAAATGCAATGAAACGCCCAAAAACAGGGCGTTAA - >AT3G08620.1
ATGCAAGTCTTACCCATTTGTAGCCGACTCTTAAATCAAGAAATTTTCCGGATCACCGGAATGATGCCCAACCAAGGATTTACCGATTTTGATAGGTTACGGCATCGAAGTCCTAGTCCAATGGCTTCACCAAATCTTATGTCTAATGTTTCCGGTGGTGGATTAGGTGGTTGGAATGGTCTTCCACCAGAGAGAATTGGTGGTCCTCATGGAATGGCAATGGAGTGGCAAGGTGCGCCAGCTAGCCCAAGTTCATACCCAGTGAAGCGTATTTTGCGTTTAGATCTTCCAGTTGATACCTATCCGAATTTCAATTTTGTTGGAAGGCTTCTGGGTCCTAGAGGGAATTCATTAAAGCGTGTGGAAGCAACTACGGGTTGCCGTGTGTATATTAGAGGGAAAGGATCAATTAAGGATCCTGAAAAAGAAGAGAAACTGAAAGGGAAGCCTGGCTATGAGCATCTCAATGAGCAGTTGCATATCCTCATTGAGGCTGATCTTCCAATTGATATTGTGGATATAAAGCTGCGGCAGGCCCAAGAAATAATCGAGGAGTTGGTCAAGCCTGTGGATGAGTCGCAGGATTACATCAAGAGGCAGCAGTTGCGAGAGCTAGCGTTGCTGAATTCAAACTTGAGAGAAAACAGCCCAGGACCAAGCGGTAGTGTCTCTCCTTTCAATTCAAATGCAATGAAACGCCCAAAAACAGGGCGTTAA
Protein Sequence
- >AT3G08620.2
MQVLPICSRLLNQEIFRITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGGWNGLPPERIGGPHGMAMEWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQDYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKTGR - >AT3G08620.1
MQVLPICSRLLNQEIFRITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGGWNGLPPERIGGPHGMAMEWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQDYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKTGR