Information report for AT3G08505
Gene Details
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Functional Descriptions
- GO:0005634 — located in — nucleus
- GO:0061630 — enables — ubiquitin protein ligase activity
Functional Keywords
Literature and News
- Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit. DOI: 10.1104/pp.105.070672 ; PMID: 16500995
- Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice. DOI: 10.1186/1471-2164-9-44 ; PMID: 18221561
- Repertoire of plant RING E3 ubiquitin ligases revisited: New groups counting gene families and single genes. DOI: 10.1371/journal.pone.0203442 ; PMID: 30169501
Gene Resources
- UniProt: A0A654F575
- EMBL: CACRSJ010000106
- AlphaFoldDB: A0A654F575
- EnsemblPlants: AT3G08505.1, AT3G08505.2, AT3G08505.3
- Gramene: AT3G08505.1, AT3G08505.2, AT3G08505.3
- KEGG: ath:AT3G08505
- Orthologous matrix: EMNTRAG
- ExpressionAtlas: AT3G08505
- InterPro: IPR000571, IPR001841, IPR013083
- PANTHER: PTHR11224, PTHR11224:SF10
- SUPFAM: SSF57850, SSF90229
- PROSITE: PS00518, PS50089, PS50103
- Gene3D: 1.20.120.1350, 3.30.40.10, 4.10.1000.10
- Conserved Domain Database: cd16521
Homologs
- Brassica napus GSBRNA2T00111748001, GSBRNA2T00018550001, GSBRNA2T00125166001
- Brassica oleracea XP_013584658.1, XP_013584655.1, XP_013628161.1, XP_013628160.1
- Brassica rapa XP_009135022.1, XP_009123944.1
- Populus trichocarpa Potri.001G268200.2
Sequences
cDNA Sequence
- >AT3G08505.3
TGGTGGAGGTGGAGGAAGCGCGCTCTATCTCAAAAACGTTGGGGTCTGCTTGGTCCTCAACAATTGAAAACCGTACAAATTCAATTTCTTCACATAAAGCTCTCTCTTCCTTCTCCATTCTTCCACCCTTTTTTTTCTTCTCTCCGCACAAATCCCCAAATGTCCGATAGGATACTGTGCAAGTTCTTTGTCCATGGCTCGTGCTTGAAAGGCGAAAATTGCGAATTTTCCCATGACTCTAAGGATCCGCCCAATAATGTTTGCACATTCTATCAGAAACGAATATGTTTGTACGGAAGTAGATGTAGATACGATCATGTCAGAGCTGCTTCCAATCTTCCTCTTAGCTCAGATTCTGAGTCTTTAGATCGCTCTATATCCACCACCCCCTCTAGGCATTTGCAACAACAAGGCGATAATAATGACGGTGACAAATCCTCTAACGTTTACTGTATCCACCCTAGAGAGTACCCGATCTGCTCTTTTGCTGCAGCTGGTGATTGCCCTCGAGGTAACCAGTGTCCACATATGCATGGTGACCTCTGCAATACTTGTGGCAAGAAGTGTTTGCATCCTTTTAGACCCGAGGAACGAGAAGAGCATACGAAAGAATGTGAGAAGAAGCAGAAGCACATTGAGGCTTTGAAACAAAGTCAAGATATTGAGTGTAGTGTGTGTTTGGATCGTATCTTGTCAAAGGCTACTCCAGGGGAAAGGAAGTTTGGGCTGTTGACTGAGTGTGATCATCCGTTTTGTATACAATGTATTCGTAATTGGCGTAGCAGTGCTCCTGTTTCGGGAATGGATGTCAACAGTACGTTGAGAGCTTGTCCTATATGTCGCAAACTCTCTTATTTTGTTGTCCCTAGTGTGGTCTGGTACTCTTCTCCTGAGGAGAAGAAGGAAATTATCGACATATACAAGGCTAAACTCAGATCAATCGACTGTAAGCACTTCAACTTTGGAAATGGAAACTGCCCATTTGGAGCAAGTTGTTTCTATAAGCATGCATATTCTGATGGTCACTTGGAAGAGGTTGTTTTACGGCATCTTGGTTCTCAAGAAGGAGAAACTGTAATAACAGACAGTATCAGGCTATCAGAGTTCCTTGGTGGCCTGCAGATTTTCTAAAATATTTTTTCCCAGATAAATCGAATAACACAAGGTGGTGATGACAACTTAATATTCTTATCAAACTCATTTTGATTCTGAGTTTTGACAATCCTCTTAAATAAGGTGAAGTAATGTTTATTTATCTTTATCTTTCAGATTATCGTACTAGAATTTTCCTTGTTGGCTGATTCAAGCTATCTTCTTATTATAGAAATGTAGACATGCTCAGAGAGGATAATAGTTAAAAAGAGATAAGGACACAGGAGAAACTCAATGTAATAATATTTAGATAGGGAATGTTACTCTACTACACAATAATGTAAAAAAAAATGTGTGTGAATATACCAACAAATAATGTAAATAATGCTTTCATAGCACTCCGTCTGTAAGATATTTTAGATAAATAAAATTTGAGTTTCTATT - >AT3G08505.2
TGGTGGAGGTGGAGGAAGCGCGCTCTATCTCAAAAACGTTGGGGTCTGCTTGGTCCTCAACAATTGAAAACCGTACAAATTCAATTTCTTCACATAAAGCTCTCTCTTCCTTCTCCATTCTTCCACCCTTTTTTTTCTTCTCTCCGCACAAATCCCCAAATGTCCGATAGGATACTGTGCAAGTTCTTTGTCCATGGCTCGTGCTTGAAAGGCGAAAATTGCGAATTTTCCCATGACTCTAAGGATCCGCCCAATAATGTTTGCACATTCTATCAGAAACGAATATGTTTGTACGGAAGTAGATGTAGATACGATCATGTCAGAGCTGCTTCCAATCTTCCTCTTAGCTCAGATTCTGAGTCTTTAGATCGCTCTATATCCACCACCCCCTCTAGGCATTTGCAACAACAAGGCGATAATAATGACGGTGACAAATCCTCTAACGTTTACTGTATCCACCCTAGAGAGTACCCGATCTGCTCTTTTGCTGCAGCTGGTGATTGCCCTCGAGGTAACCAGTGTCCACATATGCATGGTGACCTCTGCAATACTTGTGGCAAGAAGTGTTTGCATCCTTTTAGACCCGAGGAACGAGAAGAGCATACGAAAGAATGTGAGAAGAAGCAGAAGCACATTGAGGCTTTGAAACAAAGTCAAGATATTGAGTGTAGTGTGTGTTTGGATCGTATCTTGTCAAAGGCTACTCCAGGGGAAAGGAAGTTTGGGCTGTTGACTGAGTGTGATCATCCGTTTTGTATACAATGTATTCGTAATTGGCGTAGCAGTGCTCCTGTTTCGGGAATGGATGTCAACAGTACGTTGAGAGCTTGTCCTATATGTCGCAAACTCTCTTATTTTGTTGTCCCTAGTGTGGTCTGGTACTCTTCTCCTGAGGAGAAGAAGGAAATTATCGACATATACAAGGCTAAACTCAGATCAATCGACTGTAAGCACTTCAACTTTGGAAATGGAAACTGCCCATTTGGAGCAAGTTGTTTCTATAAGCATGCATATTCTGATGGTCACTTGGAAGAGGTTGTTTTACGGCATCTTGGTTCTCAAGAAGGAGAAACTGTAATAACAGACAGTATCAGGCTATCAGAGTTCCTTGGTGGCCTGCAGATTTTCTAAAATATTTTTTCCCAGATAAATCGAATAACACAAGGTGGTGATGACAACTTAATATTCTTATCAAACTCATTTTGATTCTGAGTTTTGACAATCCTCTTAAATAAGGTGAAGTAATGTTTATTTATCTTTATCTTTCAGATTATCGTACTAGAATTTTCCTTGTTGGCTGATTCAAGCTATCTTCTTATTATAGAAATGTAGACATGCTCAGAGAGGATAATAGTTAAAAAGAGATAAGGACACAGGAGAAACTCAATGTAATAATATTTAGATAGGGAATGTTACTCTACTACACAATAATGTAAAAAAAAATGTGTGTGAATATACCAACAAATAATGTAAATAATGCTTTCATAGCACTCCGTCTGTAAGATATTTTAGATAAATAAAATTTGAGTTTCTATT - >AT3G08505.1
TGGTGGAGGTGGAGGAAGCGCGCTCTATCTCAAAAACGTTGGGGTCTGCTTGGTCCTCAACAATTGAAAACCGTACAAATTCAATTTCTTCACATAAAGCTCTCTCTTCCTTCTCCATTCTTCCACCCTTTTTTTTCTTCTCTCCGCACAAATCCCCAAATGTCCGATAGGATACTGTGCAAGTTCTTTGTCCATGGCTCGTGCTTGAAAGGCGAAAATTGCGAATTTTCCCATGACTCTAAGGATCCGCCCAATAATGTTTGCACATTCTATCAGAAACGAATATGTTTGTACGGAAGTAGATGTAGATACGATCATGTCAGAGCTGCTTCCAATCTTCCTCTTAGCTCAGATTCTGAGTCTTTAGATCGCTCTATATCCACCACCCCCTCTAGGCATTTGCAACAACAAGGCGATAATAATGACGGTGACAAATCCTCTAACGTTTACTGTATCCACCCTAGAGAGTACCCGATCTGCTCTTTTGCTGCAGCTGGTGATTGCCCTCGAGGTAACCAGTGTCCACATATGCATGGTGACCTCTGCAATACTTGTGGCAAGAAGTGTTTGCATCCTTTTAGACCCGAGGAACGAGAAGAGCATACGAAAGAATGTGAGAAGAAGCAGAAGCACATTGAGGCTTTGAAACAAAGTCAAGATATTGAGTGTAGTGTGTGTTTGGATCGTATCTTGTCAAAGGCTACTCCAGGGGAAAGGAAGTTTGGGCTGTTGACTGAGTGTGATCATCCGTTTTGTATACAATGTATTCGTAATTGGCGTAGCAGTGCTCCTGTTTCGGGAATGGATGTCAACAGTACGTTGAGAGCTTGTCCTATATGTCGCAAACTCTCTTATTTTGTTGTCCCTAGTGTGGTCTGGTACTCTTCTCCTGAGGAGAAGAAGGAAATTATCGACATATACAAGGCTAAACTCAGATCAATCGACTGTAAGCACTTCAACTTTGGAAATGGAAACTGCCCATTTGGAGCAAGTTGTTTCTATAAGCATGCATATTCTGATGGTCACTTGGAAGAGGTTGTTTTACGGCATCTTGGTTCTCAAGAAGGAGAAACTGTAATAACAGACAGTATCAGGCTATCAGAGTTCCTTGGTGGCCTGCAGATTTTCTAAAATATTTTTTCCCAGATAAATCGAATAACACAAGGTGGTGATGACAACTTAATATTCTTATCAAACTCATTTTGATTCTGAGTTTTGACAATCCTCTTAAATAAGGTGAAGTAATGTTTATTTATCTTTATCTTTCAGATTATCGTACTAGAATTTTCCTTGTTGGCTGATTCAAGCTATCTTCTTATTATAGAAATGTAGACATGCTCAGAGAGGATAATAGTTAAAAAGAGATAAGGACACAGGAGAAACTCAATGTAATAATATTTAGATAGGGAATGTTACTCTACTACACAATAATGTAAAAAAAAATGTGTGTGAATATACCAACAAATAATGTAAATAATGCTTTCATAGCACTCCGTCTGTAAGATATTTTAGATAAATAAAATTTGAGTTTCTATT
CDS Sequence
- >AT3G08505.3
ATGTCCGATAGGATACTGTGCAAGTTCTTTGTCCATGGCTCGTGCTTGAAAGGCGAAAATTGCGAATTTTCCCATGACTCTAAGGATCCGCCCAATAATGTTTGCACATTCTATCAGAAACGAATATGTTTGTACGGAAGTAGATGTAGATACGATCATGTCAGAGCTGCTTCCAATCTTCCTCTTAGCTCAGATTCTGAGTCTTTAGATCGCTCTATATCCACCACCCCCTCTAGGCATTTGCAACAACAAGGCGATAATAATGACGGTGACAAATCCTCTAACGTTTACTGTATCCACCCTAGAGAGTACCCGATCTGCTCTTTTGCTGCAGCTGGTGATTGCCCTCGAGGTAACCAGTGTCCACATATGCATGGTGACCTCTGCAATACTTGTGGCAAGAAGTGTTTGCATCCTTTTAGACCCGAGGAACGAGAAGAGCATACGAAAGAATGTGAGAAGAAGCAGAAGCACATTGAGGCTTTGAAACAAAGTCAAGATATTGAGTGTAGTGTGTGTTTGGATCGTATCTTGTCAAAGGCTACTCCAGGGGAAAGGAAGTTTGGGCTGTTGACTGAGTGTGATCATCCGTTTTGTATACAATGTATTCGTAATTGGCGTAGCAGTGCTCCTGTTTCGGGAATGGATGTCAACAGTACGTTGAGAGCTTGTCCTATATGTCGCAAACTCTCTTATTTTGTTGTCCCTAGTGTGGTCTGGTACTCTTCTCCTGAGGAGAAGAAGGAAATTATCGACATATACAAGGCTAAACTCAGATCAATCGACTGTAAGCACTTCAACTTTGGAAATGGAAACTGCCCATTTGGAGCAAGTTGTTTCTATAAGCATGCATATTCTGATGGTCACTTGGAAGAGGTTGTTTTACGGCATCTTGGTTCTCAAGAAGGAGAAACTGTAATAACAGACAGTATCAGGCTATCAGAGTTCCTTGGTGGCCTGCAGATTTTCTAA - >AT3G08505.2
ATGTCCGATAGGATACTGTGCAAGTTCTTTGTCCATGGCTCGTGCTTGAAAGGCGAAAATTGCGAATTTTCCCATGACTCTAAGGATCCGCCCAATAATGTTTGCACATTCTATCAGAAACGAATATGTTTGTACGGAAGTAGATGTAGATACGATCATGTCAGAGCTGCTTCCAATCTTCCTCTTAGCTCAGATTCTGAGTCTTTAGATCGCTCTATATCCACCACCCCCTCTAGGCATTTGCAACAACAAGGCGATAATAATGACGGTGACAAATCCTCTAACGTTTACTGTATCCACCCTAGAGAGTACCCGATCTGCTCTTTTGCTGCAGCTGGTGATTGCCCTCGAGGTAACCAGTGTCCACATATGCATGGTGACCTCTGCAATACTTGTGGCAAGAAGTGTTTGCATCCTTTTAGACCCGAGGAACGAGAAGAGCATACGAAAGAATGTGAGAAGAAGCAGAAGCACATTGAGGCTTTGAAACAAAGTCAAGATATTGAGTGTAGTGTGTGTTTGGATCGTATCTTGTCAAAGGCTACTCCAGGGGAAAGGAAGTTTGGGCTGTTGACTGAGTGTGATCATCCGTTTTGTATACAATGTATTCGTAATTGGCGTAGCAGTGCTCCTGTTTCGGGAATGGATGTCAACAGTACGTTGAGAGCTTGTCCTATATGTCGCAAACTCTCTTATTTTGTTGTCCCTAGTGTGGTCTGGTACTCTTCTCCTGAGGAGAAGAAGGAAATTATCGACATATACAAGGCTAAACTCAGATCAATCGACTGTAAGCACTTCAACTTTGGAAATGGAAACTGCCCATTTGGAGCAAGTTGTTTCTATAAGCATGCATATTCTGATGGTCACTTGGAAGAGGTTGTTTTACGGCATCTTGGTTCTCAAGAAGGAGAAACTGTAATAACAGACAGTATCAGGCTATCAGAGTTCCTTGGTGGCCTGCAGATTTTCTAA - >AT3G08505.1
ATGTCCGATAGGATACTGTGCAAGTTCTTTGTCCATGGCTCGTGCTTGAAAGGCGAAAATTGCGAATTTTCCCATGACTCTAAGGATCCGCCCAATAATGTTTGCACATTCTATCAGAAACGAATATGTTTGTACGGAAGTAGATGTAGATACGATCATGTCAGAGCTGCTTCCAATCTTCCTCTTAGCTCAGATTCTGAGTCTTTAGATCGCTCTATATCCACCACCCCCTCTAGGCATTTGCAACAACAAGGCGATAATAATGACGGTGACAAATCCTCTAACGTTTACTGTATCCACCCTAGAGAGTACCCGATCTGCTCTTTTGCTGCAGCTGGTGATTGCCCTCGAGGTAACCAGTGTCCACATATGCATGGTGACCTCTGCAATACTTGTGGCAAGAAGTGTTTGCATCCTTTTAGACCCGAGGAACGAGAAGAGCATACGAAAGAATGTGAGAAGAAGCAGAAGCACATTGAGGCTTTGAAACAAAGTCAAGATATTGAGTGTAGTGTGTGTTTGGATCGTATCTTGTCAAAGGCTACTCCAGGGGAAAGGAAGTTTGGGCTGTTGACTGAGTGTGATCATCCGTTTTGTATACAATGTATTCGTAATTGGCGTAGCAGTGCTCCTGTTTCGGGAATGGATGTCAACAGTACGTTGAGAGCTTGTCCTATATGTCGCAAACTCTCTTATTTTGTTGTCCCTAGTGTGGTCTGGTACTCTTCTCCTGAGGAGAAGAAGGAAATTATCGACATATACAAGGCTAAACTCAGATCAATCGACTGTAAGCACTTCAACTTTGGAAATGGAAACTGCCCATTTGGAGCAAGTTGTTTCTATAAGCATGCATATTCTGATGGTCACTTGGAAGAGGTTGTTTTACGGCATCTTGGTTCTCAAGAAGGAGAAACTGTAATAACAGACAGTATCAGGCTATCAGAGTTCCTTGGTGGCCTGCAGATTTTCTAA
Protein Sequence
- >AT3G08505.3
MSDRILCKFFVHGSCLKGENCEFSHDSKDPPNNVCTFYQKRICLYGSRCRYDHVRAASNLPLSSDSESLDRSISTTPSRHLQQQGDNNDGDKSSNVYCIHPREYPICSFAAAGDCPRGNQCPHMHGDLCNTCGKKCLHPFRPEEREEHTKECEKKQKHIEALKQSQDIECSVCLDRILSKATPGERKFGLLTECDHPFCIQCIRNWRSSAPVSGMDVNSTLRACPICRKLSYFVVPSVVWYSSPEEKKEIIDIYKAKLRSIDCKHFNFGNGNCPFGASCFYKHAYSDGHLEEVVLRHLGSQEGETVITDSIRLSEFLGGLQIF - >AT3G08505.2
MSDRILCKFFVHGSCLKGENCEFSHDSKDPPNNVCTFYQKRICLYGSRCRYDHVRAASNLPLSSDSESLDRSISTTPSRHLQQQGDNNDGDKSSNVYCIHPREYPICSFAAAGDCPRGNQCPHMHGDLCNTCGKKCLHPFRPEEREEHTKECEKKQKHIEALKQSQDIECSVCLDRILSKATPGERKFGLLTECDHPFCIQCIRNWRSSAPVSGMDVNSTLRACPICRKLSYFVVPSVVWYSSPEEKKEIIDIYKAKLRSIDCKHFNFGNGNCPFGASCFYKHAYSDGHLEEVVLRHLGSQEGETVITDSIRLSEFLGGLQIF - >AT3G08505.1
MSDRILCKFFVHGSCLKGENCEFSHDSKDPPNNVCTFYQKRICLYGSRCRYDHVRAASNLPLSSDSESLDRSISTTPSRHLQQQGDNNDGDKSSNVYCIHPREYPICSFAAAGDCPRGNQCPHMHGDLCNTCGKKCLHPFRPEEREEHTKECEKKQKHIEALKQSQDIECSVCLDRILSKATPGERKFGLLTECDHPFCIQCIRNWRSSAPVSGMDVNSTLRACPICRKLSYFVVPSVVWYSSPEEKKEIIDIYKAKLRSIDCKHFNFGNGNCPFGASCFYKHAYSDGHLEEVVLRHLGSQEGETVITDSIRLSEFLGGLQIF