Information report for AT3G08500
Gene Details
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Functional Descriptions
- GO:0045893 — acts upstream of or within — positive regulation of DNA-templated transcription
- GO:0000976 — enables — transcription cis-regulatory region binding
- GO:2000652 — acts upstream of or within — regulation of secondary cell wall biogenesis
- GO:0005634 — is active in — nucleus
- GO:0006355 — involved in — regulation of DNA-templated transcription
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0005634 — located in — nucleus
Functional Keywords
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The R2R3-MYB gene family in Arabidopsis thaliana. DOI: 10.1016/s1369-5266(00)00199-0 ; PMID: 11597504
- Cross-species microarray transcript profiling reveals high constitutive expression of metal homeostasis genes in shoots of the zinc hyperaccumulator Arabidopsis halleri. DOI: 10.1046/j.1365-313x.2003.01959.x ; PMID: 14690509
- The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. DOI: 10.1007/s11103-005-2910-y ; PMID: 16463103
- A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. DOI: 10.1101/gad.1476406 ; PMID: 17182867
- MYB83 is a direct target of SND1 and acts redundantly with MYB46 in the regulation of secondary cell wall biosynthesis in Arabidopsis. DOI: 10.1093/pcp/pcp139 ; PMID: 19808805
- Transcriptional activation of secondary wall biosynthesis by rice and maize NAC and MYB transcription factors. DOI: 10.1093/pcp/pcr123 ; PMID: 21908441
- MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. DOI: 10.1093/pcp/pcr185 ; PMID: 22197883
- The heterologous expression in Arabidopsis thaliana of sorghum transcription factor SbbHLH1 downregulates lignin synthesis. DOI: 10.1093/jxb/ert150 ; PMID: 23698629
- Promoter-based integration in plant defense regulation. DOI: 10.1104/pp.114.248716 ; PMID: 25352272
- An Arabidopsis gene regulatory network for secondary cell wall synthesis. DOI: 10.1038/nature14099 ; PMID: 25533953
- Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants. DOI: 10.1186/s13068-016-0551-9 ; PMID: 27390589
- Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation. DOI: 10.1105/tpc.15.00744 ; PMID: 27650334
- Transcriptional regulation of nitrogen-associated metabolism and growth. DOI: 10.1038/s41586-018-0656-3 ; PMID: 30356219
- A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. DOI: 10.1105/tpc.19.00562 ; PMID: 31806676
- Mitogen-activated protein kinase 6 negatively regulates secondary wall biosynthesis by modulating MYB46 protein stability in Arabidopsis thaliana. DOI: 10.1371/journal.pgen.1009510 ; PMID: 33826618
- An Arabidopsis NAC domain transcriptional activator VND7 negatively regulates VNI2 expression. DOI: 10.5511/plantbiotechnology.21.1013a ; PMID: 35087306
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
Gene Resources
- UniProt: A0A178V8Z2
- EMBL: CACSHJ010000089, LR881468, LUHQ01000003
- AlphaFoldDB: A0A178V8Z2
- EnsemblPlants: AT3G08500.1
- Gramene: AT3G08500.1
- KEGG: ath:AT3G08500
- Orthologous matrix: NRYDITG
- ExpressionAtlas: AT3G08500
- InterPro: IPR001005, IPR009057, IPR017930
- PANTHER: PTHR47997, PTHR47997:SF45
- SUPFAM: SSF46689
- PROSITE: PS50090, PS51294
- Gene3D: 1.10.10.60
- OrthoDB: A0A178V8Z2
- SWISS-MODEL: A0A178V8Z2
- Conserved Domain Database: cd00167
Homologs
- Brassica napus GSBRNA2T00111749001, GSBRNA2T00004162001, GSBRNA2T00038925001, GSBRNA2T00059540001
- Brassica oleracea XP_013628391.1, XP_013584763.1
- Brassica rapa XP_009135021.1, XP_009147002.1
- Raphanus raphanistrum RrC159_p9, RrC11452_p1, RrC21251_p1
Sequences
cDNA Sequence
- >AT3G08500.1
GAGACTCTCTCTACTCTACCCATCAATCTCAACAAACACTACTTTCTATCTCTTTCTCTCTTTGTCATATCCATTACGCATATTCGTATCATTCCAAAGCAATCCCCACAAATCATATCATCCTCTCCATCTTTCCTTGCTTCTTACAATCTCTCCAATTTCAAATCTGTATACTCTTCTTCAAAAAGGCTCCACCAGTCCAAAATGATGATGAGGAAACCGGACATTACTACGATCAGAGACAAAGGCAAGCCAAATCATGCATGTGGTGGTAATAACAACAAACCGAAGCTAAGAAAAGGACTTTGGTCGCCTGATGAAGATGAGAAGCTGATAAGATACATGTTGACTAATGGACAAGGATGTTGGAGTGACATCGCTAGAAATGCTGGTCTTTTACGTTGTGGTAAAAGTTGTCGCCTTCGCTGGATCAATTACTTGAGGCCTGATCTTAAACGTGGATCCTTCTCTCCTCAGGAGGAGGATCTCATCTTCCATTTGCATTCCATTCTTGGTAACAGGTGGTCTCAAATAGCTACTCGGCTTCCAGGTAGAACAGACAACGAGATCAAAAACTTTTGGAACTCGACATTGAAGAAGCGGCTTAAGAACAACAGCAACAACAATACTTCATCAGGATCATCACCTAACAATAGTAATAGTAATTCCTTGGACCCAAGAGATCAACATGTGGATATGGGAGGCAACTCAACTTCATTGATGGATGACTATCATCATGATGAAAACATGATGACAGTGGGGAACACCATGCGCATGGACTCTTCCTCCCCATTCAATGTTGGACCAATGGTTAATAGTGTGGGCTTAAACCAACTTTATGATCCCTTGATGATATCAGTGCCGGATAACGGATATCACCAAATGGGAAACACAGTGAATGTGTTCAGCGTTAATGGTTTAGGAGATTATGGAAACACAATTCTTGATCCAATTAGCAAGAGAGTATCAGTAGAAGGTGATGATTGGTTCATTCCCCCCTCGGAGAATACCAACGTCATTGCTTGTAGTACAAGCAACAACCTAAACTTACAGGCCCTTGATCCTTGCTTCAATAGCAAAAATCTTTGTCATTCAGAAAGCTTCAAGGTAGGGAATGTGTTGGGGATAGAGAATGGTTCTTGGGAAATAGAAAACCCTAAAATCGGAGATTGGGATTTGGATGGTCTCATCGATAACAACTCTTCTTTTCCCTTCCTTGATTTCCAAGTCGATTGACAATTTCTCTCTTTTCATTTCATTCTATCTTCTTTTACTCATTCCTTCTTATTCATTCTTATACACATATTTTTTAACATGAAGTGGATCGATCTTTTTTCTAAAAGAGTCTCATTTTTTTGTGGCAAAAAAGTCTTTAAAAAATAATAATTCAGAATTGGTATATTCTCTTCTTGTCCCTTTGTTTTCCCATCATATGTATTTTATTATTCACAATAATATTGCTCATAGAAACGGGAGAAACGGGAGAGATATGATATGCATAGCTTATATCTTTAGTTGGAGGAACCAATCACCATGCATGGTTACATTAGTACATGAAATGTGAATAGGAAGGTACATTGAGATTTTATTTGCTGAGGAAGTACTTAAATAATGGCCCACACAGCAGTGAGGTGATTAGTTGTTTCATTTGTATAGCTTTCTCTTTCTTTTCATATACTTTTCTGTACAAATCTGAGTTTGATTGATGTGTAAAACGCGGTTTCGTAATAAGAAAGCATTATCAGCTTTA
CDS Sequence
- >AT3G08500.1
ATGATGATGAGGAAACCGGACATTACTACGATCAGAGACAAAGGCAAGCCAAATCATGCATGTGGTGGTAATAACAACAAACCGAAGCTAAGAAAAGGACTTTGGTCGCCTGATGAAGATGAGAAGCTGATAAGATACATGTTGACTAATGGACAAGGATGTTGGAGTGACATCGCTAGAAATGCTGGTCTTTTACGTTGTGGTAAAAGTTGTCGCCTTCGCTGGATCAATTACTTGAGGCCTGATCTTAAACGTGGATCCTTCTCTCCTCAGGAGGAGGATCTCATCTTCCATTTGCATTCCATTCTTGGTAACAGGTGGTCTCAAATAGCTACTCGGCTTCCAGGTAGAACAGACAACGAGATCAAAAACTTTTGGAACTCGACATTGAAGAAGCGGCTTAAGAACAACAGCAACAACAATACTTCATCAGGATCATCACCTAACAATAGTAATAGTAATTCCTTGGACCCAAGAGATCAACATGTGGATATGGGAGGCAACTCAACTTCATTGATGGATGACTATCATCATGATGAAAACATGATGACAGTGGGGAACACCATGCGCATGGACTCTTCCTCCCCATTCAATGTTGGACCAATGGTTAATAGTGTGGGCTTAAACCAACTTTATGATCCCTTGATGATATCAGTGCCGGATAACGGATATCACCAAATGGGAAACACAGTGAATGTGTTCAGCGTTAATGGTTTAGGAGATTATGGAAACACAATTCTTGATCCAATTAGCAAGAGAGTATCAGTAGAAGGTGATGATTGGTTCATTCCCCCCTCGGAGAATACCAACGTCATTGCTTGTAGTACAAGCAACAACCTAAACTTACAGGCCCTTGATCCTTGCTTCAATAGCAAAAATCTTTGTCATTCAGAAAGCTTCAAGGTAGGGAATGTGTTGGGGATAGAGAATGGTTCTTGGGAAATAGAAAACCCTAAAATCGGAGATTGGGATTTGGATGGTCTCATCGATAACAACTCTTCTTTTCCCTTCCTTGATTTCCAAGTCGATTGA
Protein Sequence
- >AT3G08500.1
MMMRKPDITTIRDKGKPNHACGGNNNKPKLRKGLWSPDEDEKLIRYMLTNGQGCWSDIARNAGLLRCGKSCRLRWINYLRPDLKRGSFSPQEEDLIFHLHSILGNRWSQIATRLPGRTDNEIKNFWNSTLKKRLKNNSNNNTSSGSSPNNSNSNSLDPRDQHVDMGGNSTSLMDDYHHDENMMTVGNTMRMDSSSPFNVGPMVNSVGLNQLYDPLMISVPDNGYHQMGNTVNVFSVNGLGDYGNTILDPISKRVSVEGDDWFIPPSENTNVIACSTSNNLNLQALDPCFNSKNLCHSESFKVGNVLGIENGSWEIENPKIGDWDLDGLIDNNSSFPFLDFQVD