Information report for AT3G08020
Gene Details
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Functional Descriptions
- GO:0045944 — involved in — positive regulation of transcription by RNA polymerase II
- GO:0045892 — involved in — negative regulation of DNA-templated transcription
- GO:0005634 — located in — nucleus
- GO:0003712 — enables — transcription coregulator activity
Functional Keywords
Literature and News
- Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome. DOI: 10.1186/gb-2002-3-4-research0016 ; PMID: 11983057
- The TRIPLE PHD FINGERS proteins are required for SWI/SNF complex-mediated +1 nucleosome positioning and transcription start site determination in Arabidopsis. DOI: 10.1093/nar/gkac826 ; PMID: 36189880
- Comprehensive characterization of three classes of Arabidopsis SWI/SNF chromatin remodelling complexes. DOI: 10.1038/s41477-022-01282-z ; PMID: 36471048
- Comprehensive identification of SWI/SNF complex subunits underpins deep eukaryotic ancestry and reveals new plant components. DOI: 10.1038/s42003-022-03490-x ; PMID: 35668117
Gene Resources
- UniProt: Q0WKW1
- EMBL: AK229897, AK230450, CP002686
- AlphaFoldDB: Q0WKW1
- EnsemblPlants: AT3G08020.1
- Gramene: AT3G08020.1
- KEGG: ath:AT3G08020
- Orthologous matrix: EMMDANW
Homologs
- Brachypodium distachyon BRADI_3g13210v3
- Malus domestica MDP0000249969
- Saccharum spontaneum Sspon.06G0031000-2D
- Setaria italica SETIT_0030121mg, SETIT_013357mg
- Setaria viridis SEVIR_5G410300v2, SEVIR_6G004100v2
Sequences
cDNA Sequence
- >AT3G08020.1
GTTTCTTTGGCTGCATCTTAAAAACATCGTTGATTAAGGTTGAGATGAGAAAAGCACCTTATCTCTGCGTCCAAACCAAAACTCACAGAGCTCACCAAAAGAGACGACCCTTTTTCTACTACACAAAGAAACTACTGATTAATTCATTAATACTAATAGAGTTATTAACATTACCGATCCTTATATTATTATATTAAATATAAAAAAAAAAAAGAGAAAGAAGCGATCTCTAAAAATCAAAATCTCGATTTTTTTTTTTTTTTTTCCGTTTGGAGGCGAGAGGAATAATTTTTGTTGGGGTGAGGATATATGGGATGGCCTTTCACGTAGCTTGTCCAATTACATGTCGTCGGATTTGCCATTGCTCCTTAGGGTTTTCTCGGGATCTCCGTGGAGCCAATGCGAAACATAAGTTTTTGAAAGAGGTTATTCGAGTGGAGGAGTTTCTCAAGGATCCTGCTGTTTCTTCTAATGTTTTTATTGGAGGTACCGTTCAAGTTAGGGTTCCTAAGGTTGTTCCTGCTCCTCAGACGGTTTCGATTTTGGGGGTTGGAGATGGTGCTATTGGTTCTGGTGTTGATGAATTGGCGGAGGAAGCTTCTGCTCAGAAGAAACGTGTTGCTCTTCAGAGACAAGCTGCTGTTACTGTCGAAGCTGCTGAGGATTATGCTCGGAGGTTTGAATCTGGTGTCAATGACCTTACCTCAAACGATCATGCTGGTGAAGAATTAGGCCACTCCGGCATGAATATAATGTGCAGAATGTGCTTCCTAGGAGAAGGTGAAGGAAGTGATAGAGCAAGGAGGATGCTTTCTTGTAAAGACTGTGGAAAGAAGTACCACAAGAATTGTTTAAAGTCTTGGGCTCAACATAGAGATTTATTTCATTGGAGTTCATGGAGTTGTCCCTCTTGCCGGGTTTGTGAGGTCTGCCGTAGAACAGGAGATCCTAACAAGTTCATGTTCTGCAAAAGGTGTGATGCTGCTTACCATTGTTATTGCCAACATCCTCCACACAAGAATGTTAGTTCTGGGCCATATCTCTGCCCAAAGCATACAAGATGCCACAGCTGTGATTCTACTGTCCCTGGAAATGGCCTGAGTGTCAGGTGGTTTTTATCATATACTTGCTGTGATGCTTGTGGCAGATTGTTTGTTAAGGGAAATTATTGCCCTGTATGCTTGAAGGTGTATAGGGATTCGGAATCAACCCCAATGGTATGCTGCGATATTTGTCAACGCTGGGTGCATTGCCATTGTGATGGAATAAGTGATGACAAATATATGCAGTTTCAAGTTGATGGAAAGCTACAATATAAATGTGCCACATGCCGTGGGGAGTGTTATCAGGTGAAGGATCTTCAGGATGCAGTTCAAGAACTTTGGAAGAAAAAAGATGTGGTGGACAAAGAGTTGATTGCTAGTTTAAGGGCTGCTGCTGGTTTGCCAACAGAGGAGGAAATATTTTCGATATTTCCATTTTCAGATGATGAAGAAAATGGACCCGTATCTGGGCGCTCACTGAAGTTTTCGATTAAAGGTTTGGTGGAAAAATCCCCAAAGAAAAGCAAGGAGTATGGGAAACACTCTTCAAGTAAAAAGCATGCTAGTAAAAAAGGTAGTCACACTAAGTTGGAGCCTGAAGTTCATCAGGAGATTGGATCTGAGAGACGCCGACTAGGTGGTGTTAGAATTGATAATGTGGGTTTTCAGATAAACGAACAATCGGACGTTAATTCTTCTGTAGCTGGAATTTGCTCAACACATGAACCTAAGATTGTAAAACACAAGAGGGTTGATGATGTTATGGTGACTGATGAAGAAAAGCCGTCAAGGATAGTGAGAATAAAGTGTAGCAAGCCTCATGATTCTGATAGCGAGGATACCCTAAGGAATGCAGGGGAGGAAAAATCTGTAAAGGCAAAGAAGTTGGTTATTAATCTGGGTGCTAGGAAAATAAATGTCAGTGGTTCTTCGAAGTCCAATGTTGTTTCTCATTTATCGAGAGACAAAGATCAGTCCACTTTGGGTGGGGATAAAGTTGATCAGACTGGGGAAGTAAGAACCCTGAAGATCTCTGGAAGGTTTGGGAAAACTCAATCTGAAGGAAGTAAAGCTACATTTGGGTCAGTCACTCAGTTCCCTGCTGCATCAACAAGTGAAGGAAATCATGTGGATGACAAAACATCCATCTCACCAGCATTACAGAAAGAAGCAAGACCTCTGCTGAAATTTAAACTCAGGAAACCTAATTCAGGAGATCAGACATCTTCGGTTACAACGCAGTCTGAAGATGAAAAATTGAGTTCTGCAAAGGGCCAAAGATCAAAGAGAAAGAGACCTTCAAGCTTAGTGGACATGGCTTCATTGAAAGAAGACGGTGAAGCTACAACACATTCTCATCAGGATAATTCAAGGAACGACGAGATGATGGATGCTAACTGGATTTTGAAAAAGTTGGGTAAAGATTCAATAGGAAAGAGAGTCGAAGTCCATGGATCTCAAAACTCATGGCGTAAGGGAACAGTGACAGACGTTTCTGGAGACACATCCACATTGTCGGTTTCTCTAGATGATGGAAGCATCAAGACATTTGAACTTGGGAAGCACAGTGTCCGCTTCATACCGCAAAAGCAAAAGAGGTCAAGGAGCTGATTGGACCATCGAGCAGCGCTTTAGTCACTAACTTTCTGCATGCGAGCCATGAAGAAGATTTGATTGTTGGGGCATTTTATACTATTTAAGCTCTTTCTGGTGGTAATTATCAGTAAGATGGAAAGTGCCAAACTGTGTAGATATTACTTGTGGTGTTGAAGGTAGCTATGATCTTGTTAAGACTCGATTGGTCGTTCCCTGTAACTTACTCACTTCCTAGGTCCATAGTTTTTGCAGACTCATGTAACAATTTGTTCAAATTCAAGCATGTCAGAAATCTGTTACTAAATGGCAAAATATGGTATAAACATTTATC
CDS Sequence
- >AT3G08020.1
ATGGCCTTTCACGTAGCTTGTCCAATTACATGTCGTCGGATTTGCCATTGCTCCTTAGGGTTTTCTCGGGATCTCCGTGGAGCCAATGCGAAACATAAGTTTTTGAAAGAGGTTATTCGAGTGGAGGAGTTTCTCAAGGATCCTGCTGTTTCTTCTAATGTTTTTATTGGAGGTACCGTTCAAGTTAGGGTTCCTAAGGTTGTTCCTGCTCCTCAGACGGTTTCGATTTTGGGGGTTGGAGATGGTGCTATTGGTTCTGGTGTTGATGAATTGGCGGAGGAAGCTTCTGCTCAGAAGAAACGTGTTGCTCTTCAGAGACAAGCTGCTGTTACTGTCGAAGCTGCTGAGGATTATGCTCGGAGGTTTGAATCTGGTGTCAATGACCTTACCTCAAACGATCATGCTGGTGAAGAATTAGGCCACTCCGGCATGAATATAATGTGCAGAATGTGCTTCCTAGGAGAAGGTGAAGGAAGTGATAGAGCAAGGAGGATGCTTTCTTGTAAAGACTGTGGAAAGAAGTACCACAAGAATTGTTTAAAGTCTTGGGCTCAACATAGAGATTTATTTCATTGGAGTTCATGGAGTTGTCCCTCTTGCCGGGTTTGTGAGGTCTGCCGTAGAACAGGAGATCCTAACAAGTTCATGTTCTGCAAAAGGTGTGATGCTGCTTACCATTGTTATTGCCAACATCCTCCACACAAGAATGTTAGTTCTGGGCCATATCTCTGCCCAAAGCATACAAGATGCCACAGCTGTGATTCTACTGTCCCTGGAAATGGCCTGAGTGTCAGGTGGTTTTTATCATATACTTGCTGTGATGCTTGTGGCAGATTGTTTGTTAAGGGAAATTATTGCCCTGTATGCTTGAAGGTGTATAGGGATTCGGAATCAACCCCAATGGTATGCTGCGATATTTGTCAACGCTGGGTGCATTGCCATTGTGATGGAATAAGTGATGACAAATATATGCAGTTTCAAGTTGATGGAAAGCTACAATATAAATGTGCCACATGCCGTGGGGAGTGTTATCAGGTGAAGGATCTTCAGGATGCAGTTCAAGAACTTTGGAAGAAAAAAGATGTGGTGGACAAAGAGTTGATTGCTAGTTTAAGGGCTGCTGCTGGTTTGCCAACAGAGGAGGAAATATTTTCGATATTTCCATTTTCAGATGATGAAGAAAATGGACCCGTATCTGGGCGCTCACTGAAGTTTTCGATTAAAGGTTTGGTGGAAAAATCCCCAAAGAAAAGCAAGGAGTATGGGAAACACTCTTCAAGTAAAAAGCATGCTAGTAAAAAAGGTAGTCACACTAAGTTGGAGCCTGAAGTTCATCAGGAGATTGGATCTGAGAGACGCCGACTAGGTGGTGTTAGAATTGATAATGTGGGTTTTCAGATAAACGAACAATCGGACGTTAATTCTTCTGTAGCTGGAATTTGCTCAACACATGAACCTAAGATTGTAAAACACAAGAGGGTTGATGATGTTATGGTGACTGATGAAGAAAAGCCGTCAAGGATAGTGAGAATAAAGTGTAGCAAGCCTCATGATTCTGATAGCGAGGATACCCTAAGGAATGCAGGGGAGGAAAAATCTGTAAAGGCAAAGAAGTTGGTTATTAATCTGGGTGCTAGGAAAATAAATGTCAGTGGTTCTTCGAAGTCCAATGTTGTTTCTCATTTATCGAGAGACAAAGATCAGTCCACTTTGGGTGGGGATAAAGTTGATCAGACTGGGGAAGTAAGAACCCTGAAGATCTCTGGAAGGTTTGGGAAAACTCAATCTGAAGGAAGTAAAGCTACATTTGGGTCAGTCACTCAGTTCCCTGCTGCATCAACAAGTGAAGGAAATCATGTGGATGACAAAACATCCATCTCACCAGCATTACAGAAAGAAGCAAGACCTCTGCTGAAATTTAAACTCAGGAAACCTAATTCAGGAGATCAGACATCTTCGGTTACAACGCAGTCTGAAGATGAAAAATTGAGTTCTGCAAAGGGCCAAAGATCAAAGAGAAAGAGACCTTCAAGCTTAGTGGACATGGCTTCATTGAAAGAAGACGGTGAAGCTACAACACATTCTCATCAGGATAATTCAAGGAACGACGAGATGATGGATGCTAACTGGATTTTGAAAAAGTTGGGTAAAGATTCAATAGGAAAGAGAGTCGAAGTCCATGGATCTCAAAACTCATGGCGTAAGGGAACAGTGACAGACGTTTCTGGAGACACATCCACATTGTCGGTTTCTCTAGATGATGGAAGCATCAAGACATTTGAACTTGGGAAGCACAGTGTCCGCTTCATACCGCAAAAGCAAAAGAGGTCAAGGAGCTGA
Protein Sequence
- >AT3G08020.1
MAFHVACPITCRRICHCSLGFSRDLRGANAKHKFLKEVIRVEEFLKDPAVSSNVFIGGTVQVRVPKVVPAPQTVSILGVGDGAIGSGVDELAEEASAQKKRVALQRQAAVTVEAAEDYARRFESGVNDLTSNDHAGEELGHSGMNIMCRMCFLGEGEGSDRARRMLSCKDCGKKYHKNCLKSWAQHRDLFHWSSWSCPSCRVCEVCRRTGDPNKFMFCKRCDAAYHCYCQHPPHKNVSSGPYLCPKHTRCHSCDSTVPGNGLSVRWFLSYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDICQRWVHCHCDGISDDKYMQFQVDGKLQYKCATCRGECYQVKDLQDAVQELWKKKDVVDKELIASLRAAAGLPTEEEIFSIFPFSDDEENGPVSGRSLKFSIKGLVEKSPKKSKEYGKHSSSKKHASKKGSHTKLEPEVHQEIGSERRRLGGVRIDNVGFQINEQSDVNSSVAGICSTHEPKIVKHKRVDDVMVTDEEKPSRIVRIKCSKPHDSDSEDTLRNAGEEKSVKAKKLVINLGARKINVSGSSKSNVVSHLSRDKDQSTLGGDKVDQTGEVRTLKISGRFGKTQSEGSKATFGSVTQFPAASTSEGNHVDDKTSISPALQKEARPLLKFKLRKPNSGDQTSSVTTQSEDEKLSSAKGQRSKRKRPSSLVDMASLKEDGEATTHSHQDNSRNDEMMDANWILKKLGKDSIGKRVEVHGSQNSWRKGTVTDVSGDTSTLSVSLDDGSIKTFELGKHSVRFIPQKQKRSRS