AT3G07750

Gene Details

Gene ID: AT3G07750
Gene Symbol: RRP42
Gene Name: ribosomal RNA processing 42
Description: 3-5-exoribonuclease family protein;(source:Araport11)
TAIR Accession: locus:2077522
Genome: Araport11_genome_release
Species: Arabidopsis thaliana

Functional Descriptions

GO:0043928 — involved in — exonucleolytic catabolism of deadenylated mRNA
GO:0071038 — involved in — nuclear polyadenylation-dependent tRNA catabolic process
GO:0034427 — involved in — nuclear-transcribed mRNA catabolic process, exonucleolytic, 3-5
GO:0000176 — part of — nuclear exosome (RNase complex)
GO:0071035 — involved in — nuclear polyadenylation-dependent rRNA catabolic process
GO:0034473 — involved in — exonucleolytic trimming to generate mature 3-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0000467 27813 P nucleobase-containing compound metabolic process IBA none PANTHER:PTN000120504|SGD:S000000631|SGD:S000002688|SGD:S000002269 Communication:501741973 2023-06-07 AT3G07750 locus:2077522 AT3G07750 involved in U1 snRNA 3-end processing
GO:0034473 — involved in — U4 snRNA 3-end processing GO:0034475 29535 P other metabolic processes IBA none PANTHER:PTN000120504|SGD:S000002688 Communication:501741973 2021-03-31 AT3G07750 locus:2077522 AT3G07750 involved in nuclear-transcribed mRNA catabolic process, exonucleolytic, 3-5 GO:0034427 29449 P other cellular processes IBA none PANTHER:PTN000120504|SGD:S000000631 Communication:501741973 2021-03-31 AT3G07750 locus:2077522 AT3G07750 involved in nuclear polyadenylation-dependent rRNA catabolic process GO:0071035 32918 P other metabolic processes IBA none PANTHER:PTN000120504|SGD:S000000631|UniProtKB:Q06265|SGD:S000002688 Communication:501741973 2023-06-07 AT3G07750 locus:2077522 AT3G07750 involved in nuclear polyadenylation-dependent mRNA catabolic process GO:0071042 32925 P nucleobase-containing compound metabolic process IBA none PANTHER:PTN000120504|SGD:S000000631 Communication:501741973 2021-03-31
GO:0000467 — involved in — exonucleolytic trimming to generate mature 3-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0000467 27813 P other cellular processes IBA none PANTHER:PTN000120504|SGD:S000000631|SGD:S000002688|SGD:S000002269 Communication:501741973 2023-06-07 AT3G07750 locus:2077522 AT3G07750 involved in nuclear polyadenylation-dependent mRNA catabolic process GO:0071042 32925 P other cellular processes IBA none PANTHER:PTN000120504|SGD:S000000631 Communication:501741973 2021-03-31 AT3G07750 locus:2077522 AT3G07750 involved in nuclear polyadenylation-dependent mRNA catabolic process GO:0071042 32925 P other metabolic processes IBA none PANTHER:PTN000120504|SGD:S000000631 Communication:501741973 2021-03-31 AT3G07750 locus:2077522 AT3G07750 part of cytoplasmic exosome (RNase complex) GO:0000177 234 C cytoplasm IBA none PANTHER:PTN000120503|UniProtKB:Q583T6|SGD:S000002269|SGD:S000002688|SGD:S000000631 Communication:501741973 2023-06-07 AT3G07750 locus:2077522 AT3G07750 involved in exonucleolytic trimming to generate mature 3-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005737 — located in — cytoplasm
GO:0071028 — involved in — nuclear mRNA surveillance
GO:0071042 — involved in — nuclear polyadenylation-dependent mRNA catabolic process
GO:0000177 — part of — cytoplasmic exosome (RNase complex)
GO:0034476 — involved in — U4 snRNA 3-end processing GO:0034475 29535 P nucleobase-containing compound metabolic process IBA none PANTHER:PTN000120504|SGD:S000002688 Communication:501741973 2021-03-31 AT3G07750 locus:2077522 AT3G07750 involved in nuclear-transcribed mRNA catabolic process, exonucleolytic, 3-5 GO:0034427 29449 P catabolic process IBA none PANTHER:PTN000120504|SGD:S000000631 Communication:501741973 2021-03-31 AT3G07750 locus:2077522 AT3G07750 part of nuclear exosome (RNase complex) GO:0000176 512 C nucleus IBA none PANTHER:PTN000120503|SGD:S000002688|UniProtKB:Q583T6|FB:FBgn0034065|PomBase:SPBC17D1.03c|UniProtKB:Q06265|SGD:S000000631|PomBase:SPCC757.08|SGD:S000002269|PomBase:SPBC16G5.10 Communication:501741973 2023-06-07 AT3G07750 locus:2077522 AT3G07750 involved in U5 snRNA 3-end processing

SALK_101771 — IPMS1 mutants grew somewhat slower and had undulated leaves that tended to be slightly chlorotic. Showed an increase in the content of the aliphatic amino acid Val.

Functional Keywords

Literature and News

Gene Resources

Homologs

Sequences

cDNA Sequence

>AT3G07750.2
GTTCACGCCATCTTTAAACCCTACGGCAGTTGTCAGTGGTCACGTCTCTCTCTTAACCTAACCAATCCAAAGTTGCCGCTAGGGTCACCGGAAAACTTCAGAGTTGTGTCTTCTATTGAATTCTCCGGGAAGGTAAAGAAGATTAGTGGGTTTTGATTGTGCTGTATAAAGATGTGTACTTTGTTTGAGCTGTCTCTTAAACCCTAGCACCAATCCGTGAACCTTGAAGTTTGTCATTCCGGTAGAAATTCCTCAGCAGTTGATCTAATTCGTTCTCTGTGTAGTATTAGTGATGGGGCTTTCTCTTGGGGAACAACATTTCATTAAAGGTGGGATTGCTCAAGATCTTCGAACTGATGGTCGGAAAAGATTGACTTACCGTCCTATCTACGTCGAAACCGGTGTTATTCCGCAGGCTAATGGTTCAGCGAGAGTTAGAATTGGTGGAACCGATGTGATTGCTAGTGTAAAGGCTGAAATTGGGAGGCCAAGTTCACTTCAACCCGATAAAGGAAAGGTTGCAGTTTTCATTGATTGCAGTCCAACAGCTGAACCGACATTTGGGGGGAGAGGAGGTGAGGAATTGTCTTCTGAGCTTGCTTTGGCTCTTCAAAGATGTCTTCTGGGTGGCAAAAGTGGAGCAGGAGCTGGAATAAATTTATCTTCGCTTTTAATCAAAGAAGGAAAAGTTTGCTGGGACCTTTATATTGATGGTCTTGTCATTAGTTCGGATGGGAATCTATTGGATGCCCTGGGTGCTGCCATTAAGGCTGCTTTAACCAACACGGCCATCCCAAAAGTCAATGTTTCAGCTGAAGTAGCAGATGATGAGCAACCAGAGATTGACATCAGCGACGAGGAATATCTTCAATTTGACACTTCCAGTGTCCCGGTCATAGTCACGTTAACAAAAGTGGGAACGCATTACATAGTTGATGCAACAGCAGAAGAGGAGTCTCAGATGAGCTCAGCTGTATCTATATCTGTGAATCGGACAGGCCATATATGTGGGTTAACCAAACGAAGCGGGTCTGGCTTAGACCCAAGCGTCATCCTTGACATGATCTCTGTTGCCAAGCATGTGACAGAGACTCTGATGAGCAAACTTGATTCAGAGATTTCAGCCGCAGAGGCCTGCGAAGACGAATCTTGACTCTTGAGTCTCAGAGAATCAAAGTTTCAAGATGAAACATGTTAGCAAGGGATCAACAATATTTGTATCTGTGGAAAATCTTATACGAAGTCAGAACAGATTAAGCTAATCAAAATCCTTTTTCCTATGTTCTAATGTTCCATGCTTTGTGATAGTAAAGGTGATATTTTTGCCATTATAGTATTAGTAACATTATATCTCATCTAGGGATTATTAAAAGAGGCGTTCCTTGGATCTCTGTGTTTAAAGTGAAAGACATAACAAGTTACAAAAGGATTTGTGATATTTTGGGAGGAGGAAATGAGAATGGAGATGAGG
>AT3G07750.1
GTTCACGCCATCTTTAAACCCTACGGCAGTTGTCAGTGGTCACGTCTCTCTCTTAACCTAACCAATCCAAAGTTGCCGCTAGGGTCACCGGAAAACTTCAGAGTTGTGTCTTCTATTGAATTCTCCGGGAAGGTAAAGAAGATTAGTGGGTTTTGATTGTGCTGTATAAAGATGTGTACTTTGTTTGAGCTGTCTCTTAAACCCTAGCACCAATCCGTGAACCTTGAAGTTTGTCATTCCGGTAGAAATTCCTCAGCAGTTGATCTAATTCGTTCTCTGTGTAGTATTAGTGATGGGGCTTTCTCTTGGGGAACAACATTTCATTAAAGGTGGGATTGCTCAAGATCTTCGAACTGATGGTCGGAAAAGATTGACTTACCGTCCTATCTACGTCGAAACCGGTGTTATTCCGCAGGCTAATGGTTCAGCGAGAGTTAGAATTGGTGGAACCGATGTGATTGCTAGTGTAAAGGCTGAAATTGGGAGGCCAAGTTCACTTCAACCCGATAAAGGAAAGGTTGCAGTTTTCATTGATTGCAGTCCAACAGCTGAACCGACATTTGGGGGGAGAGGAGGTGAGGAATTGTCTTCTGAGCTTGCTTTGGCTCTTCAAAGATGTCTTCTGGGTGGCAAAAGTGGAGCAGGAGCTGGAATAAATTTATCTTCGCTTTTAATCAAAGAAGGAAAAGTTTGCTGGGACCTTTATATTGATGGTCTTGTCATTAGTTCGGATGGGAATCTATTGGATGCCCTGGGTGCTGCCATTAAGGCTGCTTTAACCAACACGGCCATCCCAAAAGTCAATGTTTCAGCTGAAGTAGCAGATGATGAGCAACCAGAGATTGACATCAGCGACGAGGAATATCTTCAATTTGACACTTCCAGTGTCCCGGTCATAGTCACGTTAACAAAAGTGGGAACGCATTACATAGTTGATGCAACAGCAGAAGAGGAGTCTCAGATGAGCTCAGCTGTATCTATATCTGTGAATCGGACAGGCCATATATGTGGGTTAACCAAACGAAGCGGGTCTGGCTTAGACCCAAGCGTCATCCTTGACATGATCTCTGTTGCCAAGCATGTGACAGAGACTCTGATGAGCAAACTTGATTCAGAGATTTCAGCCGCAGAGGCCTGCGAAGACGAATCTTGACTCTTGAGTCTCAGAGAATCAAAGTTTCAAGATGAAACATGTTAGCAAGGGATCAACAATATTTGTATCTGTGGAAAATCTTATACGAAGTCAGAACAGATTAAGCTAATCAAAATCCTTTTTCCTATGTTCTAATGTTCCATGCTTTGTGATAGTAAAGGTGATATTTTTGCCATTATAGTATTAGTAACATTATATCTCATCTAGGGATTATTAAAAGAGGCGTTCCTTGGATCTCTGTGTTTAAAGTGAAAGACATAACAAGTTACAAAAGGATTTGTGATATTTTGGGAGGAGGAAATGAGAATGGAGATGAGG

CDS Sequence

>AT3G07750.2
ATGGGGCTTTCTCTTGGGGAACAACATTTCATTAAAGGTGGGATTGCTCAAGATCTTCGAACTGATGGTCGGAAAAGATTGACTTACCGTCCTATCTACGTCGAAACCGGTGTTATTCCGCAGGCTAATGGTTCAGCGAGAGTTAGAATTGGTGGAACCGATGTGATTGCTAGTGTAAAGGCTGAAATTGGGAGGCCAAGTTCACTTCAACCCGATAAAGGAAAGGTTGCAGTTTTCATTGATTGCAGTCCAACAGCTGAACCGACATTTGGGGGGAGAGGAGGTGAGGAATTGTCTTCTGAGCTTGCTTTGGCTCTTCAAAGATGTCTTCTGGGTGGCAAAAGTGGAGCAGGAGCTGGAATAAATTTATCTTCGCTTTTAATCAAAGAAGGAAAAGTTTGCTGGGACCTTTATATTGATGGTCTTGTCATTAGTTCGGATGGGAATCTATTGGATGCCCTGGGTGCTGCCATTAAGGCTGCTTTAACCAACACGGCCATCCCAAAAGTCAATGTTTCAGCTGAAGTAGCAGATGATGAGCAACCAGAGATTGACATCAGCGACGAGGAATATCTTCAATTTGACACTTCCAGTGTCCCGGTCATAGTCACGTTAACAAAAGTGGGAACGCATTACATAGTTGATGCAACAGCAGAAGAGGAGTCTCAGATGAGCTCAGCTGTATCTATATCTGTGAATCGGACAGGCCATATATGTGGGTTAACCAAACGAAGCGGGTCTGGCTTAGACCCAAGCGTCATCCTTGACATGATCTCTGTTGCCAAGCATGTGACAGAGACTCTGATGAGCAAACTTGATTCAGAGATTTCAGCCGCAGAGGCCTGCGAAGACGAATCTTGA
>AT3G07750.1
ATGGGGCTTTCTCTTGGGGAACAACATTTCATTAAAGGTGGGATTGCTCAAGATCTTCGAACTGATGGTCGGAAAAGATTGACTTACCGTCCTATCTACGTCGAAACCGGTGTTATTCCGCAGGCTAATGGTTCAGCGAGAGTTAGAATTGGTGGAACCGATGTGATTGCTAGTGTAAAGGCTGAAATTGGGAGGCCAAGTTCACTTCAACCCGATAAAGGAAAGGTTGCAGTTTTCATTGATTGCAGTCCAACAGCTGAACCGACATTTGGGGGGAGAGGAGGTGAGGAATTGTCTTCTGAGCTTGCTTTGGCTCTTCAAAGATGTCTTCTGGGTGGCAAAAGTGGAGCAGGAGCTGGAATAAATTTATCTTCGCTTTTAATCAAAGAAGGAAAAGTTTGCTGGGACCTTTATATTGATGGTCTTGTCATTAGTTCGGATGGGAATCTATTGGATGCCCTGGGTGCTGCCATTAAGGCTGCTTTAACCAACACGGCCATCCCAAAAGTCAATGTTTCAGCTGAAGTAGCAGATGATGAGCAACCAGAGATTGACATCAGCGACGAGGAATATCTTCAATTTGACACTTCCAGTGTCCCGGTCATAGTCACGTTAACAAAAGTGGGAACGCATTACATAGTTGATGCAACAGCAGAAGAGGAGTCTCAGATGAGCTCAGCTGTATCTATATCTGTGAATCGGACAGGCCATATATGTGGGTTAACCAAACGAAGCGGGTCTGGCTTAGACCCAAGCGTCATCCTTGACATGATCTCTGTTGCCAAGCATGTGACAGAGACTCTGATGAGCAAACTTGATTCAGAGATTTCAGCCGCAGAGGCCTGCGAAGACGAATCTTGA

Protein Sequence

>AT3G07750.2
MGLSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGLTKRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISAAEACEDES
>AT3G07750.1
MGLSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGLTKRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISAAEACEDES