Information report for AT3G07370
Gene Details
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Functional Descriptions
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- GO:0006515 — involved in — protein quality control for misfolded or incompletely synthesized proteins
- GO:0009737 — acts upstream of or within — response to abscisic acid
- GO:0005737 — located in — cytoplasm
- GO:0005515 — enables — protein binding
- GO:0051087 — enables — protein-folding chaperone binding
- GO:0004842 — enables — ubiquitin-protein transferase activity
- GO:0009266 — acts upstream of or within — response to temperature stimulus
- GO:0009651 — acts upstream of or within — response to salt stress
- GO:0071218 — involved in — cellular response to misfolded protein
- GO:0061630 — enables — ubiquitin protein ligase activity
- GO:0043161 — involved in — proteasome-mediated ubiquitin-dependent protein catabolic process
- GO:0045862 — involved in — positive regulation of proteolysis
- GO:0005737 — is active in — cytoplasm
- SALK_059253C — Seedlings screened in bulk via high throughput methods for responses to various stressors. Results are in comparison to Col-0.heat:no change,cold:no change,oxidative stress:decreased,osmotic stress:no change,salt stress:increased,ABA:no change,hypoxia:no change.
Functional Keywords
Literature and News
- AtCHIP functions as an E3 ubiquitin ligase of protein phosphatase 2A subunits and alters plant response to abscisic acid treatment. DOI: 10.1111/j.1365-313X.2006.02730.x ; PMID: 16640601
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- In silico identification of carboxylate clamp type tetratricopeptide repeat proteins in Arabidopsis and rice as putative co-chaperones of Hsp90/Hsp70. DOI: 10.1371/journal.pone.0012761 ; PMID: 20856808
- The E3 ligase AtCHIP positively regulates Clp proteolytic subunit homeostasis. DOI: 10.1093/jxb/erv286 ; PMID: 26085677
- News from the PUB: plant U-box type E3 ubiquitin ligases. DOI: 10.1093/jxb/erx411 ; PMID: 29237060
- The E3 ligase AtCHIP ubiquitylates FtsH1, a component of the chloroplast FtsH protease, and affects protein degradation in chloroplasts. DOI: 10.1111/j.1365-313X.2007.03239.x ; PMID: 17714429
Gene Resources
- UniProt: A0A178VGJ7
- EMBL: CACRSJ010000106, CACSHJ010000089, LR881468
- AlphaFoldDB: A0A178VGJ7
- EnsemblPlants: AT3G07370.1
- Gramene: AT3G07370.1
- KEGG: ath:AT3G07370
- Orthologous matrix: WAGVEHD
- ExpressionAtlas: AT3G07370
- InterPro: IPR003613, IPR011990, IPR013083
- PANTHER: PTHR46803, PTHR46803:SF2
- SUPFAM: SSF48452, SSF57850
- PROSITE: PS51698
- Gene3D: 1.25.40.10, 3.30.40.10
- OrthoDB: A0A178VGJ7
- SWISS-MODEL: A0A178VGJ7
- Conserved Domain Database: cd16654
Homologs
- Actinidia chinensis CEY00_Acc09116
- Capsicum annuum T459_21808
- Citrus sinensis orange1.1g002719m.g
- Glycine max GLYMA_03G008800
- Gossypium barbadense Gobar.A07G154900, Gobar.D07G159900
- Musa acuminata Ma03_g14440
- Oryza sativa OsPUB15, OM64
Sequences
cDNA Sequence
- >AT3G07370.1
AGTAAACAAAAAGAATGACTATAAGATCCGGATTATGATCCAAGTCTCATCGAGCTGACCCGGTAAAGAGACTAATCTCTTTCGATAACCGATTCATTTAAAATTCCCTTTTGCTTACTTTTCTCTCTCCTTTCATCGAGAAATTTCGCGGCTACTTCTCTTCTGAAACGCACCGGGACGCGCCGTCGCACAAGTTACAGAGGAGTGTTGGAAAGGATAAAGACTTGGTTTTCTGGGGTGCCGTAGATATGGTTACAGGCGTGGCTTCCGCCATGGCGGAGCGGTTAAAGGAAGACGGAAACAATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGGCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTTTGCCACATGAAGCGAAAGGATTGGACTAAGGTTGAAGAGGATTGTCGCAAAGCTATTCAGCTTGTCCACAATTCCGTCAAGGCACACTACATGCTAGGACTTGCATTATTGCAGAAGAAAGAATTTACTAATGGAGTCAAAGAATTGCAAAGGGCTTTAGATCTTGGAAGATGCTCGAATCCAACAGGATATATGGTAGAAGAAATATGGGAAGAGCTTTCTAAAGCAAAATACATGGAGTGGGAACTGGTTTCTGCAATGCGGTCATGGGAACTGAATAGTTTGAAGGAAACTTGTGAGGCTGCTCTTAATCAACAACGTGCTTTAGATATGTCTCGAACAGAAGAGTCCTCAGACGAAGCATATACTGCCCATACTGAGCGTTTGAAAGCTCTTGAACGAGTGTTTAAGAAAGCTGCAGAAGAAGATAAACCAACTGAGGTGCCAGATTATTTATGTTGCAATATAACTCTTGAGATTTTCCGAGATCCTGTAATTTCTCCAAGTGGGGTTACATATGAAAGAGCAGCAATCCTTGAACATCTCAAGAAGGTGGGGAAGTTTGATCCTATAACTCGTGAAAAAATCGACCCGGCTAATCTCGTTCCAAATCTGGCTATCAAAGAGGCAGTGGCAGCATATCTAGAAAAACACGTCTGGGCTTACAAGATGGGTTGTTGATCGAAATGGGGATTAACATAAACACAATGAAGCGGATGAGAAATTGAGGTTAACTACTCAGGTGACCGAACAAAACAGATGGGTGCGTTTACCTTTTTTCACATTTGTGTTTGTTGTTGCCGATGTTTTCAGTGTAAGATTCTCTGCCCTGTGTATATATTACAATGTTTTTTTGTGCACTCTGTACACATTGGCCATATGGCTTAGCCTATATAACACACATACAGAATTTATTTACTATTGAGGAAAGCCCAATAACATACATACAGATATTGTTTATCATTGAGAAAAGCCCAATAACAGACAGATTTAGATGCAGTTCTCTGACGTCAACAAGATTGATGAATTGTATCTCATTAGGATGTAGTCCAAGGCATGCTTAAGTATTTTTTGAAACCTTCTTGGACCACTCCGGT
CDS Sequence
- >AT3G07370.1
ATGGTTACAGGCGTGGCTTCCGCCATGGCGGAGCGGTTAAAGGAAGACGGAAACAATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGGCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTTTGCCACATGAAGCGAAAGGATTGGACTAAGGTTGAAGAGGATTGTCGCAAAGCTATTCAGCTTGTCCACAATTCCGTCAAGGCACACTACATGCTAGGACTTGCATTATTGCAGAAGAAAGAATTTACTAATGGAGTCAAAGAATTGCAAAGGGCTTTAGATCTTGGAAGATGCTCGAATCCAACAGGATATATGGTAGAAGAAATATGGGAAGAGCTTTCTAAAGCAAAATACATGGAGTGGGAACTGGTTTCTGCAATGCGGTCATGGGAACTGAATAGTTTGAAGGAAACTTGTGAGGCTGCTCTTAATCAACAACGTGCTTTAGATATGTCTCGAACAGAAGAGTCCTCAGACGAAGCATATACTGCCCATACTGAGCGTTTGAAAGCTCTTGAACGAGTGTTTAAGAAAGCTGCAGAAGAAGATAAACCAACTGAGGTGCCAGATTATTTATGTTGCAATATAACTCTTGAGATTTTCCGAGATCCTGTAATTTCTCCAAGTGGGGTTACATATGAAAGAGCAGCAATCCTTGAACATCTCAAGAAGGTGGGGAAGTTTGATCCTATAACTCGTGAAAAAATCGACCCGGCTAATCTCGTTCCAAATCTGGCTATCAAAGAGGCAGTGGCAGCATATCTAGAAAAACACGTCTGGGCTTACAAGATGGGTTGTTGA
Protein Sequence
- >AT3G07370.1
MVTGVASAMAERLKEDGNNCFKKERFGAAIDAYTEAIALSPNVPAYWTNRALCHMKRKDWTKVEEDCRKAIQLVHNSVKAHYMLGLALLQKKEFTNGVKELQRALDLGRCSNPTGYMVEEIWEELSKAKYMEWELVSAMRSWELNSLKETCEAALNQQRALDMSRTEESSDEAYTAHTERLKALERVFKKAAEEDKPTEVPDYLCCNITLEIFRDPVISPSGVTYERAAILEHLKKVGKFDPITREKIDPANLVPNLAIKEAVAAYLEKHVWAYKMGC