Gene Details:
- Gene ID: AT3G07170
- Gene Symbol: IRP1
- Gene Name: INVOLVED IN rRNA PROCESSING 1
- Description: Sterile alpha motif (SAM) domain-containing protein;(source:Araport11)
- TAIR Accession: locus:2098550
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Gene Ontology:
- GO:0005737 — located in — cytoplasm
- GO:0006364 — acts upstream of or within — rRNA processing
- GO:0016757 — enables — glycosyltransferase activity
- GO:0005730 — located in — nucleolus
- GO:0005634 — located in — nucleus
Germplasm Phenotype:
- irp1-1 — Early flowering.
Literature:
- Plant-specific ribosome biogenesis factors in Arabidopsis thaliana with essential function in rRNA processing. DOI: 10.1093/nar/gky1261 ; PMID: 30576513
Sequences:
cDNA Sequence
- >AT3G07170.2
TCTATCTCCCTCTCTCCGTCATAATTCTATTGAGATATATCTTGCTTTCCTCGAAAATTCTTCAGTATGTTAGCTGGTACTTGGTGTTAGAGTCTTTTCCTCTTGTGTATAATCTTCCTTGTAGCATCCCCAAGTTTGATTCTTGCTTCGCTCTATGAATTAGAGTATGGAATCCGCTCTTTTTGTTAGCTTACTAGGACTCTCTGATTTGCCCATTTTGAATTGGCAAAGGCAGGACGACAAATGGGAGCATGATCTTTTCAGTAGTGACAAACCTCAACTTTCAAATCGCAGGGTTGATCCTAGAGATCTTCGTTTGAAGCTCCAAAAGAGACATCATGGGTCTCAAAGTGGGCGAGAAGCTGGTTCAGGCGTGCGGGATTTACGGGATCAGCTCTCTGGGACAATGAATCAGCAACCAAAAAACAGTGACCCACCAAAATCCAAAGCGGAGGCTGCTAGGCCAAGTATGAAGAGCGTAGCGACTGAAACAGAGACTAGAAAAACTTCCAGTCAAGCTACCAGGAAGAAATCACAGCAGGCTGATTCATCGGTTGATAGCTTTCTTGAATCATTGGGTCTCGAGAAATATTCAACAGCGTTTCAAGTGGAAGAAGTTGATATGGATGCTCTCATGCATATGACAGATGATGACCTCAAGGCTATGCTCATACCGATGGGTCCGAGGAAGAAGATACTTCTTGCTTTGGGATCTAAACCCTAA - >AT3G07170.1
TCTATCTCCCTCTCTCCGTCATAATTCTATTGAGATATATCTTGCTTTCCTCGAAAATTCTTCAGTATGTTAGCTGGTACTTGGTGTTAGAGTCTTTTCCTCTTGTGTATAATCTTCCTTGTAGCATCCCCAAGTTTGATTCTTGCTTCGCTCTATGAATTAGAGTATGGAATCCGCTCTTTTTGTTAGCTTACTAGGACTCTCTGATTTGCCCATTTTGAATTGGCAAAGGCAGGACGACAAATGGGAGCATGATCTTTTCAGTAGTGACAAACCTCAACTTTCAAATCGCAGGGTTGATCCTAGAGATCTTCGTTTGAAGCTCCAAAAGAGACATCATGGGTCTCAAAGTGGGCGAGAAGCTGGTTCAGGCGTGCGGGATTTACGGGATCAGCTCTCTGGGACAATGAATCAGCAACCAAAAAACAGTGACCCACCAAAATCCAAAGCGGAGGCTGCTAGGCCAAGTATGAAGAGCGTAGCGACTGAAACAGAGACTAGAAAAACTTCCAGTCAAGCTACCAGGAAGAAATCACAGCAGGCTGATTCATCGGTTGATAGCTTTCTTGAATCATTGGGTCTCGAGAAATATTCAACAGCGTTTCAAGTGGAAGAAGTTGATATGGATGCTCTCATGCATATGACAGATGATGACCTCAAGGCTATGCTCATACCGATGGGTCCGAGGAAGAAGATACTTCTTGCTTTGGGATCTAAACCCTAA
CDS Sequence
- >AT3G07170.2
ATGGAATCCGCTCTTTTTGTTAGCTTACTAGGACTCTCTGATTTGCCCATTTTGAATTGGCAAAGGCAGGACGACAAATGGGAGCATGATCTTTTCAGTAGTGACAAACCTCAACTTTCAAATCGCAGGGTTGATCCTAGAGATCTTCGTTTGAAGCTCCAAAAGAGACATCATGGGTCTCAAAGTGGGCGAGAAGCTGGTTCAGGCGTGCGGGATTTACGGGATCAGCTCTCTGGGACAATGAATCAGCAACCAAAAAACAGTGACCCACCAAAATCCAAAGCGGAGGCTGCTAGGCCAAGTATGAAGAGCGTAGCGACTGAAACAGAGACTAGAAAAACTTCCAGTCAAGCTACCAGGAAGAAATCACAGCAGGCTGATTCATCGGTTGATAGCTTTCTTGAATCATTGGGTCTCGAGAAATATTCAACAGCGTTTCAAGTGGAAGAAGTTGATATGGATGCTCTCATGCATATGACAGATGATGACCTCAAGGCTATGCTCATACCGATGGGTCCGAGGAAGAAGATACTTCTTGCTTTGGGATCTAAACCCTAA - >AT3G07170.1
ATGGAATCCGCTCTTTTTGTTAGCTTACTAGGACTCTCTGATTTGCCCATTTTGAATTGGCAAAGGCAGGACGACAAATGGGAGCATGATCTTTTCAGTAGTGACAAACCTCAACTTTCAAATCGCAGGGTTGATCCTAGAGATCTTCGTTTGAAGCTCCAAAAGAGACATCATGGGTCTCAAAGTGGGCGAGAAGCTGGTTCAGGCGTGCGGGATTTACGGGATCAGCTCTCTGGGACAATGAATCAGCAACCAAAAAACAGTGACCCACCAAAATCCAAAGCGGAGGCTGCTAGGCCAAGTATGAAGAGCGTAGCGACTGAAACAGAGACTAGAAAAACTTCCAGTCAAGCTACCAGGAAGAAATCACAGCAGGCTGATTCATCGGTTGATAGCTTTCTTGAATCATTGGGTCTCGAGAAATATTCAACAGCGTTTCAAGTGGAAGAAGTTGATATGGATGCTCTCATGCATATGACAGATGATGACCTCAAGGCTATGCTCATACCGATGGGTCCGAGGAAGAAGATACTTCTTGCTTTGGGATCTAAACCCTAA
Protein Sequence
- >AT3G07170.2
MESALFVSLLGLSDLPILNWQRQDDKWEHDLFSSDKPQLSNRRVDPRDLRLKLQKRHHGSQSGREAGSGVRDLRDQLSGTMNQQPKNSDPPKSKAEAARPSMKSVATETETRKTSSQATRKKSQQADSSVDSFLESLGLEKYSTAFQVEEVDMDALMHMTDDDLKAMLIPMGPRKKILLALGSKP - >AT3G07170.1
MESALFVSLLGLSDLPILNWQRQDDKWEHDLFSSDKPQLSNRRVDPRDLRLKLQKRHHGSQSGREAGSGVRDLRDQLSGTMNQQPKNSDPPKSKAEAARPSMKSVATETETRKTSSQATRKKSQQADSSVDSFLESLGLEKYSTAFQVEEVDMDALMHMTDDDLKAMLIPMGPRKKILLALGSKP