Information report for AT3G06350
Gene Details
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Functional Descriptions
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- GO:0009507 — located in — chloroplast
- GO:0019632 — acts upstream of or within — shikimate metabolic process
- GO:0009423 — involved in — chorismate biosynthetic process
- GO:0009793 — acts upstream of or within — embryo development ending in seed dormancy
- GO:0009570 — located in — chloroplast stroma
- GO:0019632 — involved in — shikimate metabolic process
- GO:0003855 — enables — 3-dehydroquinate dehydratase activity
- GO:0050661 — enables — NADP binding
- GO:0004764 — enables — shikimate 3-dehydrogenase (NADP+) activity
- CS24352 — embryo defective; developmental arrest of mutant embryos occurs at cotyledon stage.
Functional Keywords
Literature and News
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. DOI: 10.1242/dev.01595 ; PMID: 15634699
- Biosynthesis of cellulose-enriched tension wood in Populus: global analysis of transcripts and metabolites identifies biochemical and developmental regulators in secondary wall biosynthesis. DOI: 10.1111/j.1365-313X.2005.02584.x ; PMID: 16367961
- Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes. DOI: 10.1186/gb-2006-7-8-R76 ; PMID: 16916443
- Conservation and divergence of microRNAs in Populus. DOI: 10.1186/1471-2164-8-481 ; PMID: 18166134
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. DOI: 10.1104/pp.110.168120 ; PMID: 21139083
- Species specific amino acid sequence-protein local structure relationships: An analysis in the light of a structural alphabet. DOI: 10.1016/j.jtbi.2011.01.047 ; PMID: 21333657
- Molecular foundations of reproductive lethality in Arabidopsis thaliana. DOI: 10.1371/journal.pone.0028398 ; PMID: 22164284
- Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis. DOI: 10.1111/nph.16071 ; PMID: 31334862
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
- Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. DOI: 10.1104/pp.108.124545 ; PMID: 18633119
- Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. DOI: 10.1021/pr1009433 ; PMID: 21166475
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: A0A178VBC4
- EMBL: CACRSJ010000106, LUHQ01000003
- AlphaFoldDB: A0A178VBC4
- EnsemblPlants: AT3G06350.1
- Gramene: AT3G06350.1
- KEGG: ath:AT3G06350
- Orthologous matrix: QCCDEVD
- ExpressionAtlas: AT3G06350
- InterPro: IPR001381, IPR006151, IPR011342
- PANTHER: PTHR21089, PTHR21089:SF1
- SUPFAM: SSF51569, SSF51735, SSF53223
- Gene3D: 3.20.20.70, 3.40.50.10860, 3.40.50.720
- SWISS-MODEL: A0A178VBC4
- Conserved Domain Database: cd00502, cd01065
Homologs
- Brassica oleracea XP_013629268.1
- Lactuca sativa Lsat_1_v5_gn_9_68140
Sequences
cDNA Sequence
- >AT3G06350.1
GGAGATATAAATAATTTTTTTTTGCGCCTAATCGAAACTTCACCTACCATTTTTTAGCGTATAAAAACGTTAAAAATACCAAAATTTAGAAATCCAATAAAAGTTGTGAAAAAAAGCCGCAAAGGGTCGTTGTTGTTTGTCGCCTCTCAATGGCAGCTTCTTCAACTAATGCTCGTCTCACCAACCCTCCTCGTCTACTCTCCAAACCCCGACTTTCACCTACCTCCGTCGCCAATCTCCGTTTTCCAGCCGCCGATTTCTCCACTCGCTTCTTTGCCGATTCTTCGTCCCCGCGGCTAAGGAGTGTACCGTTTCCGGTGGTATTTTCCGATCAAAGGCGCCGGCGAAGCATGGAACCTAGCAATGTCTATGTGGCTTCAAATTCCACGGAAATGGAGATCGGAAGTCATGATATCGTGAAGAATCCGAGCTTGATCTGTGCTCCAGTGATGGCGGATTCAATAGACAAGATGGTGATTGAAACGAGTAAAGCCCATGAATTGGGTGCAGACTTGGTTGAAATTCGATTAGATTGGCTAAAGGACTTCAATCCTCTTGAGGATCTAAAAACCATTATTAAGAAATCTCCTCTACCCACTTTATTCACCTACAGACCAAAATGGGAAGGTGGTCAGTATGAAGGTGATGAAAATGAGAGACGGGATGTGCTTCGTCTGGCCATGGAGTTGGGAGCTGATTATATTGATGTTGAACTTCAGGTGGCAAGTGAGTTCATCAAATCTATTGACGGAAAGAAGCCTGGAAAGTTCAAAGTAATTGTTTCATCGCACAACTATCAGAATACCCCTTCTGTTGAGGACCTTGATGGCCTTGTTGCAAGAATACAACAGACTGGAGCCGACATTGTTAAGATTGCTACTACTGCTGTGGACATTGCAGATGTTGCTCGCATGTTCCATATAACCTCAAAAGCTCAAGTTCCCACAATTGGACTTGTTATGGGTGAAAGAGGTTTGATGTCTCGGATTCTTTGTTCGAAATTTGGTGGTTATTTGACCTTTGGCACCTTAGATTCTAGTAAAGTTTCTGCGCCAGGTCAACCAACGATCAAGGATCTGTTGGATCTTTACAACTTTAGAAGAATTGGTCCTGACACAAAGGTATATGGAATTATTGGCAAGCCTGTCAGCCACAGCAAATCACCTATTGTTCACAATCAAGCTTTCAAATCAGTTGATTTTAATGGAGTATATGTCCACCTGTTAGTTGATAATCTTGTAAGCTTTCTTCAAGCATACTCATCCTCTGATTTCGCTGGATTCAGCTGTACAATTCCGCACAAAGAAGCTGCATTGCAATGTTGTGATGAAGTTGATCCATTGGCAAAGTCTATAGGAGCTGTGAACACTATACTAAGGAGAAAAAGTGACGGAAAGTTGTTGGGTTACAACACAGATTGTATTGGTTCCATTTCTGCTATTGAGGATGGCCTACGAAGTTCAGGTGATCCAAGCAGTGTACCTTCTTCTTCTTCGCCATTGGCCAGTAAAACAGTGGTGGTTATTGGTGCTGGTGGAGCAGGCAAGGCTCTTGCTTATGGTGCAAAAGAAAAGGGGGCCAAAGTTGTAATTGCTAATCGAACTTACGAACGAGCACTAGAACTCGCAGAAGCAATAGGAGGCAAAGCGTTATCTCTGACAGATTTAGATAACTATCACCCAGAAGATGGCATGGTTTTGGCAAACACAACATCTATGGGTATGCAACCAAATGTTGAGGAGACTCCAATTTCTAAGGATGCATTGAAGCACTATGCACTGGTCTTTGATGCGGTATACACTCCGAGAATCACCAGACTGTTGAGGGAAGCAGAAGAAAGTGGAGCCATAACTGTCTCAGGGTCAGAGATGTTTGTCAGGCAGGCTTACGAGCAGTTTGAGATCTTCACCGGTTTACCCGCTCCAAAGGAACTCTACTGGCAAATAATGTCAAAGTACTGAGACATAGCTTAAGTGTGTGTGTGTGTACTTCCATGAAAAGTCGTCGATTCAATAAAGCTTTAGATTGCCATTTGTATGTTCCGAGAATGTCCTTTTTTGAGGCCATAAGCCGAATGACTGGTTCTCTCTTTGTATTTATATATATGTATAAACTATTAAGCCTAACATTAATCTTTTTTAAGTTTCTTTGATTTGATGAGTCTACTATAAAAAAGAAGGGTTAAGTTGCATACTAGTCACTTTTTAAAACTTAATTGGAAAAGTAG
CDS Sequence
- >AT3G06350.1
ATGGCAGCTTCTTCAACTAATGCTCGTCTCACCAACCCTCCTCGTCTACTCTCCAAACCCCGACTTTCACCTACCTCCGTCGCCAATCTCCGTTTTCCAGCCGCCGATTTCTCCACTCGCTTCTTTGCCGATTCTTCGTCCCCGCGGCTAAGGAGTGTACCGTTTCCGGTGGTATTTTCCGATCAAAGGCGCCGGCGAAGCATGGAACCTAGCAATGTCTATGTGGCTTCAAATTCCACGGAAATGGAGATCGGAAGTCATGATATCGTGAAGAATCCGAGCTTGATCTGTGCTCCAGTGATGGCGGATTCAATAGACAAGATGGTGATTGAAACGAGTAAAGCCCATGAATTGGGTGCAGACTTGGTTGAAATTCGATTAGATTGGCTAAAGGACTTCAATCCTCTTGAGGATCTAAAAACCATTATTAAGAAATCTCCTCTACCCACTTTATTCACCTACAGACCAAAATGGGAAGGTGGTCAGTATGAAGGTGATGAAAATGAGAGACGGGATGTGCTTCGTCTGGCCATGGAGTTGGGAGCTGATTATATTGATGTTGAACTTCAGGTGGCAAGTGAGTTCATCAAATCTATTGACGGAAAGAAGCCTGGAAAGTTCAAAGTAATTGTTTCATCGCACAACTATCAGAATACCCCTTCTGTTGAGGACCTTGATGGCCTTGTTGCAAGAATACAACAGACTGGAGCCGACATTGTTAAGATTGCTACTACTGCTGTGGACATTGCAGATGTTGCTCGCATGTTCCATATAACCTCAAAAGCTCAAGTTCCCACAATTGGACTTGTTATGGGTGAAAGAGGTTTGATGTCTCGGATTCTTTGTTCGAAATTTGGTGGTTATTTGACCTTTGGCACCTTAGATTCTAGTAAAGTTTCTGCGCCAGGTCAACCAACGATCAAGGATCTGTTGGATCTTTACAACTTTAGAAGAATTGGTCCTGACACAAAGGTATATGGAATTATTGGCAAGCCTGTCAGCCACAGCAAATCACCTATTGTTCACAATCAAGCTTTCAAATCAGTTGATTTTAATGGAGTATATGTCCACCTGTTAGTTGATAATCTTGTAAGCTTTCTTCAAGCATACTCATCCTCTGATTTCGCTGGATTCAGCTGTACAATTCCGCACAAAGAAGCTGCATTGCAATGTTGTGATGAAGTTGATCCATTGGCAAAGTCTATAGGAGCTGTGAACACTATACTAAGGAGAAAAAGTGACGGAAAGTTGTTGGGTTACAACACAGATTGTATTGGTTCCATTTCTGCTATTGAGGATGGCCTACGAAGTTCAGGTGATCCAAGCAGTGTACCTTCTTCTTCTTCGCCATTGGCCAGTAAAACAGTGGTGGTTATTGGTGCTGGTGGAGCAGGCAAGGCTCTTGCTTATGGTGCAAAAGAAAAGGGGGCCAAAGTTGTAATTGCTAATCGAACTTACGAACGAGCACTAGAACTCGCAGAAGCAATAGGAGGCAAAGCGTTATCTCTGACAGATTTAGATAACTATCACCCAGAAGATGGCATGGTTTTGGCAAACACAACATCTATGGGTATGCAACCAAATGTTGAGGAGACTCCAATTTCTAAGGATGCATTGAAGCACTATGCACTGGTCTTTGATGCGGTATACACTCCGAGAATCACCAGACTGTTGAGGGAAGCAGAAGAAAGTGGAGCCATAACTGTCTCAGGGTCAGAGATGTTTGTCAGGCAGGCTTACGAGCAGTTTGAGATCTTCACCGGTTTACCCGCTCCAAAGGAACTCTACTGGCAAATAATGTCAAAGTACTGA
Protein Sequence
- >AT3G06350.1
MAASSTNARLTNPPRLLSKPRLSPTSVANLRFPAADFSTRFFADSSSPRLRSVPFPVVFSDQRRRRSMEPSNVYVASNSTEMEIGSHDIVKNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPTLFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVIVSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQCCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAITVSGSEMFVRQAYEQFEIFTGLPAPKELYWQIMSKY