Information report for AT3G06060
Gene Details
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Functional Descriptions
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- GO:0047560 — enables — 3-dehydrosphinganine reductase activity
- GO:0006666 — involved in — 3-keto-sphinganine metabolic process
- GO:0030148 — acts upstream of or within — sphingolipid biosynthetic process
- GO:0030148 — involved in — sphingolipid biosynthetic process
- GO:0005789 — is active in — endoplasmic reticulum membrane
- GO:0005789 — located in — endoplasmic reticulum membrane
- GO:0009507 — located in — chloroplast
Functional Keywords
Literature and News
- A post-genomic approach to understanding sphingolipid metabolism in Arabidopsis thaliana. DOI: 10.1093/aob/mch071 ; PMID: 15037448
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Acyl-lipid metabolism. DOI: 10.1199/tab.0161 ; PMID: 23505340
Gene Resources
- UniProt: A0A1I9LMA8
- EMBL: CP002686
- AlphaFoldDB: A0A1I9LMA8
- EnsemblPlants: AT3G06060.2
- Gramene: AT3G06060.2
- ExpressionAtlas: AT3G06060
- InterPro: IPR002347, IPR020904, IPR036291
- PANTHER: PTHR43550, PTHR43550:SF8
- SUPFAM: SSF51735
- PROSITE: PS00061
- Gene3D: 3.40.50.720
- SWISS-MODEL: A0A1I9LMA8
- Conserved Domain Database: cd08939
Homologs
- Brassica napus GSBRNA2T00012823001
- Malus domestica MDP0000247912, MDP0000304669
- Nicotiana benthamiana Niben101Scf02581g01014.1
- Oryza sativa KAR, OsPLS4, OsHSD1;LGF1, OsABA2, NYC1
- Raphanus raphanistrum RrC1188_p3
- Ricinus communis 29844.t000184
- Solanum lycopersicum Solyc04g007400.3
Sequences
cDNA Sequence
- >AT3G06060.2
CAATTTTCTATTCATCTCTTTCATAAAAATGTGTATTAGTCTAAATCAACTACAACAAATAAGGTGATTAGTGTCAGTTGTTTTTTAACGACATCATTAGAAAATAGAAACCAATTTTGAAACACAACGACAACAAGTCACAAAATTATTATATAAAAAATAAATTACAGCGAGAAACTAAAACGGCCGGTTCAGATAGAAATCATTAAACCGAGTAATTGGTTAACTGGTCTAATCGTATTTGTTTTTATTTCTCCAATGAATGAGCTGACGGAGCTTCACATCGCCGAGAGCTTCGTCACGAGATCCATGGCGGCCATTTCTCCTCTCTTCCTTCTCTTCCTCATTCCCATTATCCCACTATCGCTTCTCGCTATCTTAGCCCTAATTGTACGTCCTCGTCCCATTAAGATCCCTATCAAGTCCCGTCACGCCTTCATCACCGGTGGATCTAGCGGCATCGGTCTTGCTCTCGCCCACCGCGCCGCTTCCGAGGGCGCTCGTGTCTCAATCCTCGCCCGATCCGGATCAAAGCTCGAGGAGGCTAAGAAATCGATCCAGCTCGCCACTGGTGTCGAAGTCGCCACATTCTCTGCAGACGTTCGCGATTACGATGCAGTCTCGAAGGCGATAGATGAATCGGGACCGATCGATGTGTTGATTGTTAACCAAGGTGTGTTTACGGCGAAGGAGCTGGTGAAACATAGTCCTGAAGATGTCAAATTCACGATTGACGTAAATCTTGTTGGGAGCTTCAATGTGATTAAAGCCGCTTTGCCTGCCATGAAAGCAAGGAAAGATCGTGGACCTGCTTCCATCAGTCTCGTCTCCTCTCAAGCTGGTCAGGTTGGTGTCTATGGTTATGCTGCATATTCAGCAAGCAAGTTTGGTCTTCAGGGTTTAGCGCAAGCATTGCAACAGGAAGTTATATCTGATGATATTCATGTCACTCTTATTTTTCCTCCTGACACTAATACACCCGGCTTTGAAGAAGAACAGAAGAGCAGACCTGAAGTCACTGCCATAATAGCTGCATCCTCTGGTTCAATGGAAACAGAAGAAGTAGCAAAAAAGGCTATGGATGGCATAAAAGCAGGAAACTTCACCGTCTCATGCAACTTTGAGGGATTCTTACTGTCTCTCGCGACAACCGGCATGTCCCCTCAAAGATCATTTTGGCTTGCTTTTCTTGAAGTTATAACCGCAGGGCCTATAAGATTAATCGCTCTCTTCTTTCAATGGGATTGGTATAAAGCCATTGAAAAATGGAGCAAAACCAAAACCAAATGACAGCCCGACAATGTATCTTGAAGTGCTTTTGGCAGAAGCTTAAACATTGATGGGTATTCTCAAACCTTCTTCTCAGTCCGGTACCACGCCAGCTAGTCGACTATACCAATTCAGAATATCGACATTGCTGATAGTTTTGTAGAAACTCGTCAAGATTCATGTTTCCGGTCTTTGAACAAGCTCTGTTTTTTCTTTTTTTTTATAGAGAAATCAAAGAACTCATTTGAATGTATTTTTTACTTGGTCAAGAAGTGAATGTTTTTCACAAGATGAAATGTAAATGATGTATTTGAAAGAAGTAAAAACTTCAAAACCAAAATTTGAGTGTGTGCTGTTCTTGAGGCTTTTAAACAACGTGCAGTCTGATTTGTTTG - >AT3G06060.1
CAATTTTCTATTCATCTCTTTCATAAAAATGTGTATTAGTCTAAATCAACTACAACAAATAAGGTGATTAGTGTCAGTTGTTTTTTAACGACATCATTAGAAAATAGAAACCAATTTTGAAACACAACGACAACAAGTCACAAAATTATTATATAAAAAATAAATTACAGCGAGAAACTAAAACGGCCGGTTCAGATAGAAATCATTAAACCGAGTAATTGGTTAACTGGTCTAATCGTATTTGTTTTTATTTCTCCAATGAATGAGCTGACGGAGCTTCACATCGCCGAGAGCTTCGTCACGAGATCCATGGCGGCCATTTCTCCTCTCTTCCTTCTCTTCCTCATTCCCATTATCCCACTATCGCTTCTCGCTATCTTAGCCCTAATTGTACGTCCTCGTCCCATTAAGATCCCTATCAAGTCCCGTCACGCCTTCATCACCGGTGGATCTAGCGGCATCGGTCTTGCTCTCGCCCACCGCGCCGCTTCCGAGGGCGCTCGTGTCTCAATCCTCGCCCGATCCGGATCAAAGCTCGAGGAGGCTAAGAAATCGATCCAGCTCGCCACTGGTGTCGAAGTCGCCACATTCTCTGCAGACGTTCGCGATTACGATGCAGTCTCGAAGGCGATAGATGAATCGGGACCGATCGATGTGTTGATTGTTAACCAAGGTGTGTTTACGGCGAAGGAGCTGGTGAAACATAGTCCTGAAGATGTCAAATTCACGATTGACGTAAATCTTGTTGGGAGCTTCAATGTGATTAAAGCCGCTTTGCCTGCCATGAAAGCAAGGAAAGATCGTGGACCTGCTTCCATCAGTCTCGTCTCCTCTCAAGCTGGTCAGGTTGGTGTCTATGGTTATGCTGCATATTCAGCAAGCAAGTTTGGTCTTCAGGGTTTAGCGCAAGCATTGCAACAGGAAGTTATATCTGATGATATTCATGTCACTCTTATTTTTCCTCCTGACACTAATACACCCGGCTTTGAAGAAGAACAGAAGAGCAGACCTGAAGTCACTGCCATAATAGCTGCATCCTCTGGTTCAATGGAAACAGAAGAAGTAGCAAAAAAGGCTATGGATGGCATAAAAGCAGGAAACTTCACCGTCTCATGCAACTTTGAGGGATTCTTACTGTCTCTCGCGACAACCGGCATGTCCCCTCAAAGATCATTTTGGCTTGCTTTTCTTGAAGTTATAACCGCAGGGCCTATAAGATTAATCGCTCTCTTCTTTCAATGGGATTGGTATAAAGCCATTGAAAAATGGAGCAAAACCAAAACCAAATGACAGCCCGACAATGTATCTTGAAGTGCTTTTGGCAGAAGCTTAAACATTGATGGGTATTCTCAAACCTTCTTCTCAGTCCGGTACCACGCCAGCTAGTCGACTATACCAATTCAGAATATCGACATTGCTGATAGTTTTGTAGAAACTCGTCAAGATTCATGTTTCCGGTCTTTGAACAAGCTCTGTTTTTTCTTTTTTTTTATAGAGAAATCAAAGAACTCATTTGAATGTATTTTTTACTTGGTCAAGAAGTGAATGTTTTTCACAAGATGAAATGTAAATGATGTATTTGAAAGAAGTAAAAACTTCAAAACCAAAATTTGAGTGTGTGCTGTTCTTGAGGCTTTTAAACAACGTGCAGTCTGATTTGTTTG
CDS Sequence
- >AT3G06060.2
ATGAATGAGCTGACGGAGCTTCACATCGCCGAGAGCTTCGTCACGAGATCCATGGCGGCCATTTCTCCTCTCTTCCTTCTCTTCCTCATTCCCATTATCCCACTATCGCTTCTCGCTATCTTAGCCCTAATTGTACGTCCTCGTCCCATTAAGATCCCTATCAAGTCCCGTCACGCCTTCATCACCGGTGGATCTAGCGGCATCGGTCTTGCTCTCGCCCACCGCGCCGCTTCCGAGGGCGCTCGTGTCTCAATCCTCGCCCGATCCGGATCAAAGCTCGAGGAGGCTAAGAAATCGATCCAGCTCGCCACTGGTGTCGAAGTCGCCACATTCTCTGCAGACGTTCGCGATTACGATGCAGTCTCGAAGGCGATAGATGAATCGGGACCGATCGATGTGTTGATTGTTAACCAAGGTGTGTTTACGGCGAAGGAGCTGGTGAAACATAGTCCTGAAGATGTCAAATTCACGATTGACGTAAATCTTGTTGGGAGCTTCAATGTGATTAAAGCCGCTTTGCCTGCCATGAAAGCAAGGAAAGATCGTGGACCTGCTTCCATCAGTCTCGTCTCCTCTCAAGCTGGTCAGGTTGGTGTCTATGGTTATGCTGCATATTCAGCAAGCAAGTTTGGTCTTCAGGGTTTAGCGCAAGCATTGCAACAGGAAGTTATATCTGATGATATTCATGTCACTCTTATTTTTCCTCCTGACACTAATACACCCGGCTTTGAAGAAGAACAGAAGAGCAGACCTGAAGTCACTGCCATAATAGCTGCATCCTCTGGTTCAATGGAAACAGAAGAAGTAGCAAAAAAGGCTATGGATGGCATAAAAGCAGGAAACTTCACCGTCTCATGCAACTTTGAGGGATTCTTACTGTCTCTCGCGACAACCGGCATGTCCCCTCAAAGATCATTTTGGCTTGCTTTTCTTGAAGTTATAACCGCAGGGCCTATAAGATTAATCGCTCTCTTCTTTCAATGGGATTGGTATAAAGCCATTGAAAAATGGAGCAAAACCAAAACCAAATGA - >AT3G06060.1
ATGAATGAGCTGACGGAGCTTCACATCGCCGAGAGCTTCGTCACGAGATCCATGGCGGCCATTTCTCCTCTCTTCCTTCTCTTCCTCATTCCCATTATCCCACTATCGCTTCTCGCTATCTTAGCCCTAATTGTACGTCCTCGTCCCATTAAGATCCCTATCAAGTCCCGTCACGCCTTCATCACCGGTGGATCTAGCGGCATCGGTCTTGCTCTCGCCCACCGCGCCGCTTCCGAGGGCGCTCGTGTCTCAATCCTCGCCCGATCCGGATCAAAGCTCGAGGAGGCTAAGAAATCGATCCAGCTCGCCACTGGTGTCGAAGTCGCCACATTCTCTGCAGACGTTCGCGATTACGATGCAGTCTCGAAGGCGATAGATGAATCGGGACCGATCGATGTGTTGATTGTTAACCAAGGTGTGTTTACGGCGAAGGAGCTGGTGAAACATAGTCCTGAAGATGTCAAATTCACGATTGACGTAAATCTTGTTGGGAGCTTCAATGTGATTAAAGCCGCTTTGCCTGCCATGAAAGCAAGGAAAGATCGTGGACCTGCTTCCATCAGTCTCGTCTCCTCTCAAGCTGGTCAGGTTGGTGTCTATGGTTATGCTGCATATTCAGCAAGCAAGTTTGGTCTTCAGGGTTTAGCGCAAGCATTGCAACAGGAAGTTATATCTGATGATATTCATGTCACTCTTATTTTTCCTCCTGACACTAATACACCCGGCTTTGAAGAAGAACAGAAGAGCAGACCTGAAGTCACTGCCATAATAGCTGCATCCTCTGGTTCAATGGAAACAGAAGAAGTAGCAAAAAAGGCTATGGATGGCATAAAAGCAGGAAACTTCACCGTCTCATGCAACTTTGAGGGATTCTTACTGTCTCTCGCGACAACCGGCATGTCCCCTCAAAGATCATTTTGGCTTGCTTTTCTTGAAGTTATAACCGCAGGGCCTATAAGATTAATCGCTCTCTTCTTTCAATGGGATTGGTATAAAGCCATTGAAAAATGGAGCAAAACCAAAACCAAATGA
Protein Sequence
- >AT3G06060.2
MNELTELHIAESFVTRSMAAISPLFLLFLIPIIPLSLLAILALIVRPRPIKIPIKSRHAFITGGSSGIGLALAHRAASEGARVSILARSGSKLEEAKKSIQLATGVEVATFSADVRDYDAVSKAIDESGPIDVLIVNQGVFTAKELVKHSPEDVKFTIDVNLVGSFNVIKAALPAMKARKDRGPASISLVSSQAGQVGVYGYAAYSASKFGLQGLAQALQQEVISDDIHVTLIFPPDTNTPGFEEEQKSRPEVTAIIAASSGSMETEEVAKKAMDGIKAGNFTVSCNFEGFLLSLATTGMSPQRSFWLAFLEVITAGPIRLIALFFQWDWYKAIEKWSKTKTK - >AT3G06060.1
MNELTELHIAESFVTRSMAAISPLFLLFLIPIIPLSLLAILALIVRPRPIKIPIKSRHAFITGGSSGIGLALAHRAASEGARVSILARSGSKLEEAKKSIQLATGVEVATFSADVRDYDAVSKAIDESGPIDVLIVNQGVFTAKELVKHSPEDVKFTIDVNLVGSFNVIKAALPAMKARKDRGPASISLVSSQAGQVGVYGYAAYSASKFGLQGLAQALQQEVISDDIHVTLIFPPDTNTPGFEEEQKSRPEVTAIIAASSGSMETEEVAKKAMDGIKAGNFTVSCNFEGFLLSLATTGMSPQRSFWLAFLEVITAGPIRLIALFFQWDWYKAIEKWSKTKTK