Information report for AT3G05590
Gene Details
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Functional Descriptions
Functional Keywords
Literature and News
- The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome. DOI: 6834 ; PMID: 11598216
- The Arabidopsis root transcriptome by serial analysis of gene expression. Gene identification using the genome sequence. DOI: 10.1104/pp.103.030536 ; PMID: 14730065
- Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. DOI: 10.1093/pcp/pch099 ; PMID: 15215502
- The maize root transcriptome by serial analysis of gene expression. DOI: 10.1104/pp.104.057638 ; PMID: 15965024
- Immunopurification of polyribosomal complexes of Arabidopsis for global analysis of gene expression. DOI: 10.1104/pp.105.059477 ; PMID: 15955926
- The Arabidopsis thaliana transcriptome in response to Agrobacterium tumefaciens. DOI: 10.1094/MPMI-19-0665 ; PMID: 16776300
- An analysis of expressed sequence tags of developing castor endosperm using a full-length cDNA library. DOI: 10.1186/1471-2229-7-42 ; PMID: 17672910
- Alternative and effective proteomic analysis in Arabidopsis. DOI: 10.1002/pmic.200700346 ; PMID: 17828791
- Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. DOI: 10.1074/mcp.M700052-MCP200 ; PMID: 17934214
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- The ribosomal protein L10/QM-like protein is a component of the NIK-mediated antiviral signaling. DOI: 10.1016/j.virol.2008.08.005 ; PMID: 18789471
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Plant cytoplasmic ribosomal proteins: an update on classification, nomenclature, evolution and resources. DOI: 10.1111/tpj.15667 ; PMID: 35000252
- An updated nomenclature for plant ribosomal protein genes. DOI: 10.1093/plcell/koac333 ; PMID: 36423343
- Involvement of Target of Rapamycin (TOR) Signaling in the Regulation of Crosstalk between Ribosomal Protein Small Subunit 6 Kinase-1 (RPS6K-1) and Ribosomal Proteins. DOI: 10.3390/plants12010176 ; PMID: 36616305
- The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. DOI: 10.1016/j.cub.2004.02.039 ; PMID: 15028209
- Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. DOI: 10.1093/pcp/pch099 ; PMID: 15215502
- A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. DOI: 10.1074/mcp.M600250-MCP200 ; PMID: 17151019
- Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis. DOI: 10.1074/mcp.M600429-MCP200 ; PMID: 17317660
- Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. DOI: 10.1074/mcp.M700052-MCP200 ; PMID: 17934214
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
Gene Resources
- UniProt: A0A1I9LT16
- EMBL: CP002686
- AlphaFoldDB: A0A1I9LT16
- EnsemblPlants: AT3G05590.2, AT3G05590.3
- Gramene: AT3G05590.2, AT3G05590.3
- Orthologous matrix: IDICHKN
- ExpressionAtlas: AT3G05590
- InterPro: IPR000039, IPR021131, IPR036227
- PANTHER: PTHR10934, PTHR10934:SF25
- SUPFAM: SSF52080
- Gene3D: 3.100.10.10
- OrthoDB: A0A1I9LT16
- SWISS-MODEL: A0A1I9LT16
Sequences
cDNA Sequence
- >AT3G05590.2
CGTGGAGGAAGTAAGAGAACCCTAAAATTGAGTTGGTATAAAAACCCTAGCATCAGTATTTTCATGTAGAAGGTCGGCGGTTCCATCACCACAACGCCGGACGACAATGGTACTTCTCTCCTCCTCTGTCGTTCAATCTTCATTTCTCTCTGTCTTTCCTCTACAAGTATTTTCTGTTGTTAGTTTGATATCAAAGGTTCAGAAATCTTGTTGTTAAGAGATTGTGGGTGTTTCCTGTCATTTTAAATGTTGTATAGTGTATTAGGTTTGTTTTTCTGACATTTGAGTCTCGGGTTAGAGTGTGAACGATCTATCTCTCTTAGTTTTTTTGAGATTGGATCTTGCTTTCATGCTTGTTTGTGAGATTGATTGGTTGTGTTATTGCAGGGTATTGATCTGATCGCCGGAGGTAAGAGTAAGAAGACCAAAAGGACAGCTCCAAAGTCTGATGATGTCTACCTCAAGCTTACTGTCAAGCTTTACCGGTTTCTGGTAAGGAGAACTAATAGCAAGTTCAATGGTGTGATATTGAAGAGGCTTTTCATGAGCAAAGTCAACAAAGCTCCTCTTTCTCTATCTAGGCTTGTGGAGTTCATGACTGGCAAGGAAGATAAGATTGCCGTCTTGGTTGGAACTATAACTGATGATTTGAGGGTACACGAGATTCCAGCCATGAAAGTGACTGCCTTGAGGTTCACAGAGAGAGCAAGGGCTCGCATTGAGAAAGCTGGAGGTGAATGCTTAACCTTTGACCAGCTCGCTCTCAGAGCTCCATTGGGCCAGAACACGGTTCTTCTTAGAGGACCTAAGAATTCACGTGAAGCAGTGAAGCATTTCGGACCTGCTCCTGGTGTGCCACACAGTCACTCCAAGCCATATGTTCGGGCCAAGGGAAGGAAGTTCGAGAAGGCCAGAGGAAAGAGGAAGAGTCGTGGATTCAAGGTTTAAGAAAGTTGTTGCCGCCATTGGACTTGATTCTGGAGTACTGTTGCTTCTTGGTTGCTTTTGTAATCGGATTTTTGTTAGGGAACTCTGTTTTTTCTTTCCTCTTTCAGACATGCTACTAAGTTTGCTTCTACTGGATTCATCGTGTGGTTATTACACTTGCAGCTTTACTATGTTAAACTTAATTCATTATCTTTCTACTAAGGTCTTGACATCTCAAGACATCATAGAACTTTCTTGGTGTTTAGCATTCTTTCATTATTTC - >AT3G05590.3
CGTGGAGGAAGTAAGAGAACCCTAAAATTGAGTTGGTATAAAAACCCTAGCATCAGTATTTTCATGTAGAAGGTCGGCGGTTCCATCACCACAACGCCGGACGACAATGGTACTTCTCTCCTCCTCTGTCGTTCAATCTTCATTTCTCTCTGTCTTTCCTCTACAAGTATTTTCTGTTGTTAGTTTGATATCAAAGGTTCAGAAATCTTGTTGTTAAGAGATTGTGGGTGTTTCCTGTCATTTTAAATGTTGTATAGTGTATTAGGTTTGTTTTTCTGACATTTGAGTCTCGGGTTAGAGTGTGAACGATCTATCTCTCTTAGTTTTTTTGAGATTGGATCTTGCTTTCATGCTTGTTTGTGAGATTGATTGGTTGTGTTATTGCAGGGTATTGATCTGATCGCCGGAGGTAAGAGTAAGAAGACCAAAAGGACAGCTCCAAAGTCTGATGATGTCTACCTCAAGCTTACTGTCAAGCTTTACCGGTTTCTGGTAAGGAGAACTAATAGCAAGTTCAATGGTGTGATATTGAAGAGGCTTTTCATGAGCAAAGTCAACAAAGCTCCTCTTTCTCTATCTAGGCTTGTGGAGTTCATGACTGGCAAGGAAGATAAGATTGCCGTCTTGGTTGGAACTATAACTGATGATTTGAGGGTACACGAGATTCCAGCCATGAAAGTGACTGCCTTGAGGTTCACAGAGAGAGCAAGGGCTCGCATTGAGAAAGCTGGAGGTGAATGCTTAACCTTTGACCAGCTCGCTCTCAGAGCTCCATTGGGCCAGAACACGGTTCTTCTTAGAGGACCTAAGAATTCACGTGAAGCAGTGAAGCATTTCGGACCTGCTCCTGGTGTGCCACACAGTCACTCCAAGCCATATGTTCGGGCCAAGGGAAGGAAGTTCGAGAAGGCCAGAGGAAAGAGGAAGAGTCGTGGATTCAAGGTTTAAGAAAGTTGTTGCCGCCATTGGACTTGATTCTGGAGTACTGTTGCTTCTTGGTTGCTTTTGTAATCGGATTTTTGTTAGGGAACTCTGTTTTTTCTTTCCTCTTTCAGACATGCTACTAAGTTTGCTTCTACTGGATTCATCGTGTGGTTATTACACTTGCAGCTTTACTATGTTAAACTTAATTCATTATCTTTCTACTAAGGTCTTGACATCTCAAGACATCATAGAACTTTCTTGGTGTTTAGCATTCTTTCATTATTTC - >AT3G05590.1
CGTGGAGGAAGTAAGAGAACCCTAAAATTGAGTTGGTATAAAAACCCTAGCATCAGTATTTTCATGTAGAAGGTCGGCGGTTCCATCACCACAACGCCGGACGACAATGGTACTTCTCTCCTCCTCTGTCGTTCAATCTTCATTTCTCTCTGTCTTTCCTCTACAAGTATTTTCTGTTGTTAGTTTGATATCAAAGGTTCAGAAATCTTGTTGTTAAGAGATTGTGGGTGTTTCCTGTCATTTTAAATGTTGTATAGTGTATTAGGTTTGTTTTTCTGACATTTGAGTCTCGGGTTAGAGTGTGAACGATCTATCTCTCTTAGTTTTTTTGAGATTGGATCTTGCTTTCATGCTTGTTTGTGAGATTGATTGGTTGTGTTATTGCAGGGTATTGATCTGATCGCCGGAGGTAAGAGTAAGAAGACCAAAAGGACAGCTCCAAAGTCTGATGATGTCTACCTCAAGCTTACTGTCAAGCTTTACCGGTTTCTGGTAAGGAGAACTAATAGCAAGTTCAATGGTGTGATATTGAAGAGGCTTTTCATGAGCAAAGTCAACAAAGCTCCTCTTTCTCTATCTAGGCTTGTGGAGTTCATGACTGGCAAGGAAGATAAGATTGCCGTCTTGGTTGGAACTATAACTGATGATTTGAGGGTACACGAGATTCCAGCCATGAAAGTGACTGCCTTGAGGTTCACAGAGAGAGCAAGGGCTCGCATTGAGAAAGCTGGAGGTGAATGCTTAACCTTTGACCAGCTCGCTCTCAGAGCTCCATTGGGCCAGAACACGGTTCTTCTTAGAGGACCTAAGAATTCACGTGAAGCAGTGAAGCATTTCGGACCTGCTCCTGGTGTGCCACACAGTCACTCCAAGCCATATGTTCGGGCCAAGGGAAGGAAGTTCGAGAAGGCCAGAGGAAAGAGGAAGAGTCGTGGATTCAAGGTTTAAGAAAGTTGTTGCCGCCATTGGACTTGATTCTGGAGTACTGTTGCTTCTTGGTTGCTTTTGTAATCGGATTTTTGTTAGGGAACTCTGTTTTTTCTTTCCTCTTTCAGACATGCTACTAAGTTTGCTTCTACTGGATTCATCGTGTGGTTATTACACTTGCAGCTTTACTATGTTAAACTTAATTCATTATCTTTCTACTAAGGTCTTGACATCTCAAGACATCATAGAACTTTCTTGGTGTTTAGCATTCTTTCATTATTTC
CDS Sequence
- >AT3G05590.2
ATGAGCAAAGTCAACAAAGCTCCTCTTTCTCTATCTAGGCTTGTGGAGTTCATGACTGGCAAGGAAGATAAGATTGCCGTCTTGGTTGGAACTATAACTGATGATTTGAGGGTACACGAGATTCCAGCCATGAAAGTGACTGCCTTGAGGTTCACAGAGAGAGCAAGGGCTCGCATTGAGAAAGCTGGAGGTGAATGCTTAACCTTTGACCAGCTCGCTCTCAGAGCTCCATTGGGCCAGAACACGGTTCTTCTTAGAGGACCTAAGAATTCACGTGAAGCAGTGAAGCATTTCGGACCTGCTCCTGGTGTGCCACACAGTCACTCCAAGCCATATGTTCGGGCCAAGGGAAGGAAGTTCGAGAAGGCCAGAGGAAAGAGGAAGAGTCGTGGATTCAAGGTTTAA - >AT3G05590.3
ATGAGCAAAGTCAACAAAGCTCCTCTTTCTCTATCTAGGCTTGTGGAGTTCATGACTGGCAAGGAAGATAAGATTGCCGTCTTGGTTGGAACTATAACTGATGATTTGAGGGTACACGAGATTCCAGCCATGAAAGTGACTGCCTTGAGGTTCACAGAGAGAGCAAGGGCTCGCATTGAGAAAGCTGGAGGTGAATGCTTAACCTTTGACCAGCTCGCTCTCAGAGCTCCATTGGGCCAGAACACGGTTCTTCTTAGAGGACCTAAGAATTCACGTGAAGCAGTGAAGCATTTCGGACCTGCTCCTGGTGTGCCACACAGTCACTCCAAGCCATATGTTCGGGCCAAGGGAAGGAAGTTCGAGAAGGCCAGAGGAAAGAGGAAGAGTCGTGGATTCAAGGTTTAA - >AT3G05590.1
ATGAGCAAAGTCAACAAAGCTCCTCTTTCTCTATCTAGGCTTGTGGAGTTCATGACTGGCAAGGAAGATAAGATTGCCGTCTTGGTTGGAACTATAACTGATGATTTGAGGGTACACGAGATTCCAGCCATGAAAGTGACTGCCTTGAGGTTCACAGAGAGAGCAAGGGCTCGCATTGAGAAAGCTGGAGGTGAATGCTTAACCTTTGACCAGCTCGCTCTCAGAGCTCCATTGGGCCAGAACACGGTTCTTCTTAGAGGACCTAAGAATTCACGTGAAGCAGTGAAGCATTTCGGACCTGCTCCTGGTGTGCCACACAGTCACTCCAAGCCATATGTTCGGGCCAAGGGAAGGAAGTTCGAGAAGGCCAGAGGAAAGAGGAAGAGTCGTGGATTCAAGGTTTAA
Protein Sequence
- >AT3G05590.2
MSKVNKAPLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRKSRGFKV - >AT3G05590.3
MSKVNKAPLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRKSRGFKV - >AT3G05590.1
MSKVNKAPLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRKSRGFKV