Information report for AT3G05560
Gene Details
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Functional Descriptions
Functional Keywords
Literature and News
- The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome. DOI: 6834 ; PMID: 11598216
- High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. DOI: 10.1007/s11103-005-0699-3 ; PMID: 15821981
- Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. DOI: 10.1074/mcp.M700052-MCP200 ; PMID: 17934214
- Conservation and divergence of microRNAs in Populus. DOI: 10.1186/1471-2164-8-481 ; PMID: 18166134
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Differential phosphorylation of ribosomal proteins in Arabidopsis thaliana plants during day and night. DOI: 10.1371/journal.pone.0029307 ; PMID: 22195043
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Plant cytoplasmic ribosomal proteins: an update on classification, nomenclature, evolution and resources. DOI: 10.1111/tpj.15667 ; PMID: 35000252
- An updated nomenclature for plant ribosomal protein genes. DOI: 10.1093/plcell/koac333 ; PMID: 36423343
- Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. DOI: 10.1091/mbc.e04-09-0791 ; PMID: 15496452
- Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. DOI: 10.1104/pp.104.053637 ; PMID: 15734919
- High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. DOI: 10.1007/s11103-005-0699-3 ; PMID: 15821981
- Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis. DOI: 10.1074/mcp.M600429-MCP200 ; PMID: 17317660
- Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. DOI: 10.1074/mcp.M700052-MCP200 ; PMID: 17934214
- Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. DOI: 10.1091/mbc.e04-09-0791 ; PMID: 15496452
- Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. DOI: 10.1104/pp.104.053637 ; PMID: 15734919
- High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. DOI: 10.1007/s11103-005-0699-3 ; PMID: 15821981
- Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis. DOI: 10.1074/mcp.M600429-MCP200 ; PMID: 17317660
- Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. DOI: 10.1074/mcp.M700052-MCP200 ; PMID: 17934214
- Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis. DOI: 10.1074/mcp.M600429-MCP200 ; PMID: 17317660
- Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. DOI: 10.1074/mcp.M700052-MCP200 ; PMID: 17934214
Gene Resources
- UniProt: A0A178VBH7
- EMBL: CACRSJ010000106, LR881468, LUHQ01000003
- AlphaFoldDB: A0A178VBH7
- EnsemblPlants: AT3G05560.1, AT3G05560.2, AT3G05560.3
- Gramene: AT3G05560.1, AT3G05560.2, AT3G05560.3
- KEGG: ath:AT3G05560
- Orthologous matrix: NSFTIDC
- ExpressionAtlas: AT3G05560
- InterPro: IPR002671, IPR038526
- PANTHER: PTHR10064, PTHR10064:SF36
- Gene3D: 3.30.1360.210
- SWISS-MODEL: A0A178VBH7
Sequences
cDNA Sequence
- >AT3G05560.2
ATTCTCCCCAAAGCAAAAAAGACGCCGCTCGTCTCTTCAGAGAATTTCACCTTCTAGGGTTTGTTCAAGTCTTGGGAAAATGAGTCGTGGAGGTGCAGCTGTTGCCAAGGGAAAGAAGAAGGGAGTTTCCTTCACCATTGATTGTTCAAAGCCTGTCGATGACAAGATCATGGAGATTGCTTCCCTTGAGAAGTTTCTTCAGGAGAGGATCAAGGTCGGTGGCAAAGCTGGTGCACTTGGTGATTCTGTCACAATCACACGTGAGAAGAGCAAGATCACTGTCACTGCAGATGGCCAATTCTCCAAGAGGTATTTGAAGTACTTGACAAAGAAGTACCTGAAGAAGCACAATGTAAGGGATTGGCTCAGAGTGATTGCAGCAAACAAGGACCGTAACCTCTATGAGTTGAGGTACTTCAACATTGCTGAGAACGAAGGAGAGGAGGAAGACTAAACCTCAGAATCCAGTTTGGTTTAGAAGTATACTCTATTCCATGTTTCTGTTTTTTGGTTTCTACTCGGTATTCAATACAATTTGTCTTTTCCCTTCTGTCATTTTTGTCAGATGTTATTTAGTTTTGTTCCAGTTAACTCTTGTTGGTTATCTTACTTTAAGAGCTCATATGGATCTCGTTCTTTCAGATTGTCGTTAAAAAAGTTGGATAATGATGGAATGATTGGTTTATGAGGATTAAAGAACTCGAACGTGAATCGAAGATAATCTTTCAATTTAAAATATTTTTGCAGGATTACTTC - >AT3G05560.3
ATTCTCCCCAAAGCAAAAAAGACGCCGCTCGTCTCTTCAGAGAATTTCACCTTCTAGGGTTTGTTCAAGTCTTGGGAAAATGAGTCGTGGAGGTGCAGCTGTTGCCAAGGGAAAGAAGAAGGGAGTTTCCTTCACCATTGATTGTTCAAAGCCTGTCGATGACAAGATCATGGAGATTGCTTCCCTTGAGAAGTTTCTTCAGGAGAGGATCAAGGTCGGTGGCAAAGCTGGTGCACTTGGTGATTCTGTCACAATCACACGTGAGAAGAGCAAGATCACTGTCACTGCAGATGGCCAATTCTCCAAGAGGTATTTGAAGTACTTGACAAAGAAGTACCTGAAGAAGCACAATGTAAGGGATTGGCTCAGAGTGATTGCAGCAAACAAGGACCGTAACCTCTATGAGTTGAGGTACTTCAACATTGCTGAGAACGAAGGAGAGGAGGAAGACTAAACCTCAGAATCCAGTTTGGTTTAGAAGTATACTCTATTCCATGTTTCTGTTTTTTGGTTTCTACTCGGTATTCAATACAATTTGTCTTTTCCCTTCTGTCATTTTTGTCAGATGTTATTTAGTTTTGTTCCAGTTAACTCTTGTTGGTTATCTTACTTTAAGAGCTCATATGGATCTCGTTCTTTCAGATTGTCGTTAAAAAAGTTGGATAATGATGGAATGATTGGTTTATGAGGATTAAAGAACTCGAACGTGAATCGAAGATAATCTTTCAATTTAAAATATTTTTGCAGGATTACTTC - >AT3G05560.1
ATTCTCCCCAAAGCAAAAAAGACGCCGCTCGTCTCTTCAGAGAATTTCACCTTCTAGGGTTTGTTCAAGTCTTGGGAAAATGAGTCGTGGAGGTGCAGCTGTTGCCAAGGGAAAGAAGAAGGGAGTTTCCTTCACCATTGATTGTTCAAAGCCTGTCGATGACAAGATCATGGAGATTGCTTCCCTTGAGAAGTTTCTTCAGGAGAGGATCAAGGTCGGTGGCAAAGCTGGTGCACTTGGTGATTCTGTCACAATCACACGTGAGAAGAGCAAGATCACTGTCACTGCAGATGGCCAATTCTCCAAGAGGTATTTGAAGTACTTGACAAAGAAGTACCTGAAGAAGCACAATGTAAGGGATTGGCTCAGAGTGATTGCAGCAAACAAGGACCGTAACCTCTATGAGTTGAGGTACTTCAACATTGCTGAGAACGAAGGAGAGGAGGAAGACTAAACCTCAGAATCCAGTTTGGTTTAGAAGTATACTCTATTCCATGTTTCTGTTTTTTGGTTTCTACTCGGTATTCAATACAATTTGTCTTTTCCCTTCTGTCATTTTTGTCAGATGTTATTTAGTTTTGTTCCAGTTAACTCTTGTTGGTTATCTTACTTTAAGAGCTCATATGGATCTCGTTCTTTCAGATTGTCGTTAAAAAAGTTGGATAATGATGGAATGATTGGTTTATGAGGATTAAAGAACTCGAACGTGAATCGAAGATAATCTTTCAATTTAAAATATTTTTGCAGGATTACTTC
CDS Sequence
- >AT3G05560.2
ATGAGTCGTGGAGGTGCAGCTGTTGCCAAGGGAAAGAAGAAGGGAGTTTCCTTCACCATTGATTGTTCAAAGCCTGTCGATGACAAGATCATGGAGATTGCTTCCCTTGAGAAGTTTCTTCAGGAGAGGATCAAGGTCGGTGGCAAAGCTGGTGCACTTGGTGATTCTGTCACAATCACACGTGAGAAGAGCAAGATCACTGTCACTGCAGATGGCCAATTCTCCAAGAGGTATTTGAAGTACTTGACAAAGAAGTACCTGAAGAAGCACAATGTAAGGGATTGGCTCAGAGTGATTGCAGCAAACAAGGACCGTAACCTCTATGAGTTGAGGTACTTCAACATTGCTGAGAACGAAGGAGAGGAGGAAGACTAA - >AT3G05560.3
ATGAGTCGTGGAGGTGCAGCTGTTGCCAAGGGAAAGAAGAAGGGAGTTTCCTTCACCATTGATTGTTCAAAGCCTGTCGATGACAAGATCATGGAGATTGCTTCCCTTGAGAAGTTTCTTCAGGAGAGGATCAAGGTCGGTGGCAAAGCTGGTGCACTTGGTGATTCTGTCACAATCACACGTGAGAAGAGCAAGATCACTGTCACTGCAGATGGCCAATTCTCCAAGAGGTATTTGAAGTACTTGACAAAGAAGTACCTGAAGAAGCACAATGTAAGGGATTGGCTCAGAGTGATTGCAGCAAACAAGGACCGTAACCTCTATGAGTTGAGGTACTTCAACATTGCTGAGAACGAAGGAGAGGAGGAAGACTAA - >AT3G05560.1
ATGAGTCGTGGAGGTGCAGCTGTTGCCAAGGGAAAGAAGAAGGGAGTTTCCTTCACCATTGATTGTTCAAAGCCTGTCGATGACAAGATCATGGAGATTGCTTCCCTTGAGAAGTTTCTTCAGGAGAGGATCAAGGTCGGTGGCAAAGCTGGTGCACTTGGTGATTCTGTCACAATCACACGTGAGAAGAGCAAGATCACTGTCACTGCAGATGGCCAATTCTCCAAGAGGTATTTGAAGTACTTGACAAAGAAGTACCTGAAGAAGCACAATGTAAGGGATTGGCTCAGAGTGATTGCAGCAAACAAGGACCGTAACCTCTATGAGTTGAGGTACTTCAACATTGCTGAGAACGAAGGAGAGGAGGAAGACTAA
Protein Sequence
- >AT3G05560.2
MSRGGAAVAKGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEGEEED - >AT3G05560.3
MSRGGAAVAKGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEGEEED - >AT3G05560.1
MSRGGAAVAKGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEGEEED