Gene Details:
- Gene ID: AT3G05530
- Gene Symbol: ATS6A.2, RPT5A
- Gene Name: regulatory particle triple-A ATPase 5A
- Description: regulatory particle triple-A ATPase 5A;(source:Araport11)
- TAIR Accession:
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000229 — flower meristem — floral meristem (exact), mersitema floral (Spanish, exact), 花芽分裂組織 (Japanese, exact), floral apical meristem (related), Poaceae floret meristem (narrow), ear floret meristem (narrow), floret meristem (narrow), tassel floret meristem (narrow)
Germplasm Phenotype:
- FLAG_120A08 — Most of the male gametophyte degenerates before pollen mitosis II. Homozygous plants are dwarf.
- FLAG_130B03 — Most of the male gametophyte degenerates before pollen mitosis II. Homozygous plants are dwarf.
- FLAG_218D02 — male gametophyte degenerates before pollen mitosis II
- SALK_046321 — No visible phenotype
- rpt5a-1 (FLAG_218D02) rpt5b-1 (SALK_069366) — double mutants are both male and female gametophyte lethal
- rpt5a-4 (SALK_046321) rpt5b-2 (SAIL681C04) — double mutants are both male and female gametophyte lethal
- rpt5a-4(SALK_046321) rpt5b-1 (SALK_069366) — double mutants are both male and female gametophyte lethal
Function-related keywords:
Literature:
- Structural and functional analysis of the six regulatory particle triple-A ATPase subunits from the Arabidopsis 26S proteasome. DOI: 10.1046/j.1365-313x.1999.00479.x ; PMID: 10417703
- Structure and functional analysis of the 26S proteasome subunits from plants. DOI: 10.1023/a:1006926322501 ; PMID: 10363660
- Genes encoding calmodulin-binding proteins in the Arabidopsis genome. DOI: 10.1074/jbc.M111626200 ; PMID: 11782485
- Subunit interaction maps for the regulatory particle of the 26S proteasome and the COP9 signalosome. DOI: 10.1093/emboj/20.24.7096 ; PMID: 11742986
- The cellular level of PR500, a protein complex related to the 19S regulatory particle of the proteasome, is regulated in response to stresses in plants. DOI: 10.1091/mbc.12.2.383 ; PMID: 11179422
- A subcomplex of the proteasome regulatory particle required for ubiquitin-conjugate degradation and related to the COP9-signalosome and eIF3. DOI: 10.1016/s0092-8674(00)81603-7 ; PMID: 9741626
- High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. DOI: 10.1111/j.1365-313X.2004.02281.x ; PMID: 15610358
- The proteolytic function of the Arabidopsis 26S proteasome is required for specifying leaf adaxial identity. DOI: 10.1105/tpc.106.045013 ; PMID: 17028202
- Role of the MPN subunits in COP9 signalosome assembly and activity, and their regulatory interaction with Arabidopsis Cullin3-based E3 ligases. DOI: 10.1105/tpc.106.047571 ; PMID: 17307927
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- The Arabidopsis proteasome RPT5 subunits are essential for gametophyte development and show accession-dependent redundancy. DOI: 10.1105/tpc.108.062372 ; PMID: 19223514
- Affinity purification of the Arabidopsis 26 S proteasome reveals a diverse array of plant proteolytic complexes. DOI: 10.1074/jbc.M110.136622 ; PMID: 20516081
- A SNP associated with alternative splicing of RPT5b causes unequal redundancy between RPT5a and RPT5b among Arabidopsis thaliana natural variation. DOI: 10.1186/1471-2229-10-158 ; PMID: 20682047
- Arabidopsis RPT2a encoding the 26S proteasome subunit is required for various aspects of root meristem maintenance, and regulates gametogenesis redundantly with its homolog, RPT2b. DOI: 10.1093/pcp/pcr093 ; PMID: 21784786
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Structure, function and regulation of plant proteasomes. DOI: 10.1016/j.biochi.2007.07.019 ; PMID: 17825468
- SINAT E3 Ubiquitin Ligases Mediate FREE1 and VPS23A Degradation to Modulate Abscisic Acid Signaling. DOI: 10.1105/tpc.20.00267 ; PMID: 32753431
- Structure and functional analysis of the 26S proteasome subunits from plants. DOI: 10.1023/a:1006926322501 ; PMID: 10363660
- Genes encoding calmodulin-binding proteins in the Arabidopsis genome. DOI: 10.1074/jbc.M111626200 ; PMID: 11782485
- A subcomplex of the proteasome regulatory particle required for ubiquitin-conjugate degradation and related to the COP9-signalosome and eIF3. DOI: 10.1016/s0092-8674(00)81603-7 ; PMID: 9741626
Sequences:
cDNA Sequence
- >AT3G05530.1
TTTATTTTTAATAGCTAATATAATTTACTTTTTTCTTTTTGGTTATTTATTTTCTCTCGTCTTCTCTCCTTATTGGTTTTTTTTCTCTCATAGTCGCTCTCCCTCTCCTCTCCCTTTGAGAAATCCCTAACTCTTTGCTCTTCTCTTCCCGGCGATCTATCTCTCCGATTTGGGTATTGAAATGGCAACTCCTATGGTTGAAGATACGTCAAGCTTCGAAGAGGATCAGCTTGCTTCCATGTCCACCGAAGATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATCTTGACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCTGGTGACTTGGTTGGAGTTAACAAAGATAGCTACTTGATTTTGGATACCTTGCCATCCGAGTATGACTCTAGGGTTAAAGCCATGGAGGTCGATGAAAAACCAACTGAAGATTACAATGACATTGGAGGACTAGAGAAGCAGATCCAAGAGCTTGTAGAGGCAATTGTGCTTCCCATGACGCACAAGGAACGTTTTGAGAAGCTGGGTGTTCGTCCACCAAAGGGAGTGCTCTTGTATGGTCCCCCAGGGACTGGTAAAACTTTAATGGCTCGTGCCTGCGCAGCACAGACCAATGCCACCTTCCTTAAATTGGCAGGCCCTCAATTGGTCCAGATGTTCATTGGAGACGGAGCAAAGCTTGTCCGTGATGCCTTTCAACTTGCCAAAGAGAAAGCTCCGTGCATTATCTTCATAGATGAAATCGATGCCATTGGTACAAAGCGTTTCGACAGTGAAGTCAGCGGAGACAGGGAAGTGCAGAGGACTATGTTGGAGTTGCTCAATCAACTTGACGGATTCAGTAGCGATGAACGTATTAAGGTGATTGCAGCTACTAACCGTGCAGATATTCTGGACCCAGCACTCATGCGTTCTGGTCGATTAGACAGAAAGATTGAGTTCCCACACCCAACCGAAGAAGCGAGAGCAAGAATCTTGCAGATTCACTCAAGGAAGATGAATGTCCACCCAGACGTCAACTTTGAGGAGCTTGCACGATCAACAGATGATTTCAATGGAGCTCAGCTGAAAGCAGTGTGTGTAGAGGCAGGCATGTTAGCTCTTCGCCGTGATGCCACAGAGGTGAACCATGAAGACTTCAATGAAGGTATCATCCAAGTCCAGGCCAAGAAGAAAGCAAGCTTGAACTACTACGCCTGATCTCTCTCTCTCATCATTTATTTTTATCAATGCCGTTTATCTTTCAACTAGTTTTACTTGTACCCTCATTCCGATTTGGATCTTTTTAAGTTTTCGAATCAGGATCATCTATTATATCAAAATACATTTAATTGTGTTCATCTTCTTCTGAAAACAAGTTTGGAAATTTAGAAATCTTAGTATCTCTATAGTATTGGTTCATGGTATATAGACCTATTCTAAAATTATGTTTTCTTTCAGAAATTTTTAA
CDS Sequence
- >AT3G05530.1
ATGGCAACTCCTATGGTTGAAGATACGTCAAGCTTCGAAGAGGATCAGCTTGCTTCCATGTCCACCGAAGATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATCTTGACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCTGGTGACTTGGTTGGAGTTAACAAAGATAGCTACTTGATTTTGGATACCTTGCCATCCGAGTATGACTCTAGGGTTAAAGCCATGGAGGTCGATGAAAAACCAACTGAAGATTACAATGACATTGGAGGACTAGAGAAGCAGATCCAAGAGCTTGTAGAGGCAATTGTGCTTCCCATGACGCACAAGGAACGTTTTGAGAAGCTGGGTGTTCGTCCACCAAAGGGAGTGCTCTTGTATGGTCCCCCAGGGACTGGTAAAACTTTAATGGCTCGTGCCTGCGCAGCACAGACCAATGCCACCTTCCTTAAATTGGCAGGCCCTCAATTGGTCCAGATGTTCATTGGAGACGGAGCAAAGCTTGTCCGTGATGCCTTTCAACTTGCCAAAGAGAAAGCTCCGTGCATTATCTTCATAGATGAAATCGATGCCATTGGTACAAAGCGTTTCGACAGTGAAGTCAGCGGAGACAGGGAAGTGCAGAGGACTATGTTGGAGTTGCTCAATCAACTTGACGGATTCAGTAGCGATGAACGTATTAAGGTGATTGCAGCTACTAACCGTGCAGATATTCTGGACCCAGCACTCATGCGTTCTGGTCGATTAGACAGAAAGATTGAGTTCCCACACCCAACCGAAGAAGCGAGAGCAAGAATCTTGCAGATTCACTCAAGGAAGATGAATGTCCACCCAGACGTCAACTTTGAGGAGCTTGCACGATCAACAGATGATTTCAATGGAGCTCAGCTGAAAGCAGTGTGTGTAGAGGCAGGCATGTTAGCTCTTCGCCGTGATGCCACAGAGGTGAACCATGAAGACTTCAATGAAGGTATCATCCAAGTCCAGGCCAAGAAGAAAGCAAGCTTGAACTACTACGCCTGA
Protein Sequence
- >AT3G05530.1
MATPMVEDTSSFEEDQLASMSTEDITRATRLLDNEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA