Information report for AT3G05530
Gene Details
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Functional Descriptions
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000229 — flower meristem — floral meristem (exact), mersitema floral (Spanish, exact), 花芽分裂組織 (Japanese, exact), floral apical meristem (related), Poaceae floret meristem (narrow), ear floret meristem (narrow), floret meristem (narrow), tassel floret meristem (narrow)
- FLAG_120A08 — Most of the male gametophyte degenerates before pollen mitosis II. Homozygous plants are dwarf.
- FLAG_130B03 — Most of the male gametophyte degenerates before pollen mitosis II. Homozygous plants are dwarf.
- FLAG_218D02 — male gametophyte degenerates before pollen mitosis II
- SALK_046321 — No visible phenotype
- rpt5a-1 (FLAG_218D02) rpt5b-1 (SALK_069366) — double mutants are both male and female gametophyte lethal
- rpt5a-4 (SALK_046321) rpt5b-2 (SAIL681C04) — double mutants are both male and female gametophyte lethal
- rpt5a-4(SALK_046321) rpt5b-1 (SALK_069366) — double mutants are both male and female gametophyte lethal
Functional Keywords
Literature and News
- Structural and functional analysis of the six regulatory particle triple-A ATPase subunits from the Arabidopsis 26S proteasome. DOI: 10.1046/j.1365-313x.1999.00479.x ; PMID: 10417703
- Structure and functional analysis of the 26S proteasome subunits from plants. DOI: 10.1023/a:1006926322501 ; PMID: 10363660
- Genes encoding calmodulin-binding proteins in the Arabidopsis genome. DOI: 10.1074/jbc.M111626200 ; PMID: 11782485
- Subunit interaction maps for the regulatory particle of the 26S proteasome and the COP9 signalosome. DOI: 10.1093/emboj/20.24.7096 ; PMID: 11742986
- The cellular level of PR500, a protein complex related to the 19S regulatory particle of the proteasome, is regulated in response to stresses in plants. DOI: 10.1091/mbc.12.2.383 ; PMID: 11179422
- A subcomplex of the proteasome regulatory particle required for ubiquitin-conjugate degradation and related to the COP9-signalosome and eIF3. DOI: 10.1016/s0092-8674(00)81603-7 ; PMID: 9741626
- High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. DOI: 10.1111/j.1365-313X.2004.02281.x ; PMID: 15610358
- The proteolytic function of the Arabidopsis 26S proteasome is required for specifying leaf adaxial identity. DOI: 10.1105/tpc.106.045013 ; PMID: 17028202
- Role of the MPN subunits in COP9 signalosome assembly and activity, and their regulatory interaction with Arabidopsis Cullin3-based E3 ligases. DOI: 10.1105/tpc.106.047571 ; PMID: 17307927
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- The Arabidopsis proteasome RPT5 subunits are essential for gametophyte development and show accession-dependent redundancy. DOI: 10.1105/tpc.108.062372 ; PMID: 19223514
- Affinity purification of the Arabidopsis 26 S proteasome reveals a diverse array of plant proteolytic complexes. DOI: 10.1074/jbc.M110.136622 ; PMID: 20516081
- A SNP associated with alternative splicing of RPT5b causes unequal redundancy between RPT5a and RPT5b among Arabidopsis thaliana natural variation. DOI: 10.1186/1471-2229-10-158 ; PMID: 20682047
- Arabidopsis RPT2a encoding the 26S proteasome subunit is required for various aspects of root meristem maintenance, and regulates gametogenesis redundantly with its homolog, RPT2b. DOI: 10.1093/pcp/pcr093 ; PMID: 21784786
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Structure, function and regulation of plant proteasomes. DOI: 10.1016/j.biochi.2007.07.019 ; PMID: 17825468
- SINAT E3 Ubiquitin Ligases Mediate FREE1 and VPS23A Degradation to Modulate Abscisic Acid Signaling. DOI: 10.1105/tpc.20.00267 ; PMID: 32753431
- Structure and functional analysis of the 26S proteasome subunits from plants. DOI: 10.1023/a:1006926322501 ; PMID: 10363660
- Genes encoding calmodulin-binding proteins in the Arabidopsis genome. DOI: 10.1074/jbc.M111626200 ; PMID: 11782485
- A subcomplex of the proteasome regulatory particle required for ubiquitin-conjugate degradation and related to the COP9-signalosome and eIF3. DOI: 10.1016/s0092-8674(00)81603-7 ; PMID: 9741626
Gene Resources
- UniProt: A0A5S9XA09
- EMBL: CACRSJ010000106, CACSHJ010000089
- AlphaFoldDB: A0A5S9XA09
- EnsemblPlants: AT3G05530.1
- Gramene: AT3G05530.1
- KEGG: ath:AT3G05530
- Orthologous matrix: NKISHEH
- ExpressionAtlas: AT3G05530
- InterPro: IPR003593, IPR003959, IPR003960
- PANTHER: PTHR23073
- SUPFAM: SSF52540
- PROSITE: PS00674
- Gene3D: 1.10.8.60, 2.40.50.140, 3.40.50.300
- OrthoDB: A0A5S9XA09
- SWISS-MODEL: A0A5S9XA09
Homologs
- Sesamum indicum SIN_1023334, SIN_1024380
Sequences
cDNA Sequence
- >AT3G05530.1
TTTATTTTTAATAGCTAATATAATTTACTTTTTTCTTTTTGGTTATTTATTTTCTCTCGTCTTCTCTCCTTATTGGTTTTTTTTCTCTCATAGTCGCTCTCCCTCTCCTCTCCCTTTGAGAAATCCCTAACTCTTTGCTCTTCTCTTCCCGGCGATCTATCTCTCCGATTTGGGTATTGAAATGGCAACTCCTATGGTTGAAGATACGTCAAGCTTCGAAGAGGATCAGCTTGCTTCCATGTCCACCGAAGATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATCTTGACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCTGGTGACTTGGTTGGAGTTAACAAAGATAGCTACTTGATTTTGGATACCTTGCCATCCGAGTATGACTCTAGGGTTAAAGCCATGGAGGTCGATGAAAAACCAACTGAAGATTACAATGACATTGGAGGACTAGAGAAGCAGATCCAAGAGCTTGTAGAGGCAATTGTGCTTCCCATGACGCACAAGGAACGTTTTGAGAAGCTGGGTGTTCGTCCACCAAAGGGAGTGCTCTTGTATGGTCCCCCAGGGACTGGTAAAACTTTAATGGCTCGTGCCTGCGCAGCACAGACCAATGCCACCTTCCTTAAATTGGCAGGCCCTCAATTGGTCCAGATGTTCATTGGAGACGGAGCAAAGCTTGTCCGTGATGCCTTTCAACTTGCCAAAGAGAAAGCTCCGTGCATTATCTTCATAGATGAAATCGATGCCATTGGTACAAAGCGTTTCGACAGTGAAGTCAGCGGAGACAGGGAAGTGCAGAGGACTATGTTGGAGTTGCTCAATCAACTTGACGGATTCAGTAGCGATGAACGTATTAAGGTGATTGCAGCTACTAACCGTGCAGATATTCTGGACCCAGCACTCATGCGTTCTGGTCGATTAGACAGAAAGATTGAGTTCCCACACCCAACCGAAGAAGCGAGAGCAAGAATCTTGCAGATTCACTCAAGGAAGATGAATGTCCACCCAGACGTCAACTTTGAGGAGCTTGCACGATCAACAGATGATTTCAATGGAGCTCAGCTGAAAGCAGTGTGTGTAGAGGCAGGCATGTTAGCTCTTCGCCGTGATGCCACAGAGGTGAACCATGAAGACTTCAATGAAGGTATCATCCAAGTCCAGGCCAAGAAGAAAGCAAGCTTGAACTACTACGCCTGATCTCTCTCTCTCATCATTTATTTTTATCAATGCCGTTTATCTTTCAACTAGTTTTACTTGTACCCTCATTCCGATTTGGATCTTTTTAAGTTTTCGAATCAGGATCATCTATTATATCAAAATACATTTAATTGTGTTCATCTTCTTCTGAAAACAAGTTTGGAAATTTAGAAATCTTAGTATCTCTATAGTATTGGTTCATGGTATATAGACCTATTCTAAAATTATGTTTTCTTTCAGAAATTTTTAA
CDS Sequence
- >AT3G05530.1
ATGGCAACTCCTATGGTTGAAGATACGTCAAGCTTCGAAGAGGATCAGCTTGCTTCCATGTCCACCGAAGATATCACTAGAGCTACTCGTCTTCTCGACAACGAGATTCGAATTCTCAAGGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGATTTTGGAGATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATCTTGACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCTGGTGACTTGGTTGGAGTTAACAAAGATAGCTACTTGATTTTGGATACCTTGCCATCCGAGTATGACTCTAGGGTTAAAGCCATGGAGGTCGATGAAAAACCAACTGAAGATTACAATGACATTGGAGGACTAGAGAAGCAGATCCAAGAGCTTGTAGAGGCAATTGTGCTTCCCATGACGCACAAGGAACGTTTTGAGAAGCTGGGTGTTCGTCCACCAAAGGGAGTGCTCTTGTATGGTCCCCCAGGGACTGGTAAAACTTTAATGGCTCGTGCCTGCGCAGCACAGACCAATGCCACCTTCCTTAAATTGGCAGGCCCTCAATTGGTCCAGATGTTCATTGGAGACGGAGCAAAGCTTGTCCGTGATGCCTTTCAACTTGCCAAAGAGAAAGCTCCGTGCATTATCTTCATAGATGAAATCGATGCCATTGGTACAAAGCGTTTCGACAGTGAAGTCAGCGGAGACAGGGAAGTGCAGAGGACTATGTTGGAGTTGCTCAATCAACTTGACGGATTCAGTAGCGATGAACGTATTAAGGTGATTGCAGCTACTAACCGTGCAGATATTCTGGACCCAGCACTCATGCGTTCTGGTCGATTAGACAGAAAGATTGAGTTCCCACACCCAACCGAAGAAGCGAGAGCAAGAATCTTGCAGATTCACTCAAGGAAGATGAATGTCCACCCAGACGTCAACTTTGAGGAGCTTGCACGATCAACAGATGATTTCAATGGAGCTCAGCTGAAAGCAGTGTGTGTAGAGGCAGGCATGTTAGCTCTTCGCCGTGATGCCACAGAGGTGAACCATGAAGACTTCAATGAAGGTATCATCCAAGTCCAGGCCAAGAAGAAAGCAAGCTTGAACTACTACGCCTGA
Protein Sequence
- >AT3G05530.1
MATPMVEDTSSFEEDQLASMSTEDITRATRLLDNEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA