Information report for AT3G04840
Gene Details
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Functional Descriptions
- PO:0005020 — vascular bundle — haz vascular (Spanish, exact), vein (exact), 維管束 (Japanese, exact)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- GO:0022626 — located in — cytosolic ribosome
- GO:0003729 — enables — mRNA binding
- GO:0005829 — located in — cytosol
- GO:0005737 — located in — cytoplasm
- GO:0022627 — located in — cytosolic small ribosomal subunit
- GO:0009506 — located in — plasmodesma
- GO:0005829 — is active in — cytosol
Functional Keywords
Literature and News
- The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome. DOI: 6834 ; PMID: 11598216
- a high-density colony array study (HDCA). DOI: 10.1046/j.1365-313x.2003.01847.x ; PMID: 12969430
- High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. DOI: 10.1007/s11103-005-0699-3 ; PMID: 15821981
- Evaluation of two-dimensional electrophoresis and liquid chromatography–tandem mass spectrometry for tissue-specific protein profiling of laser-microdissected plant samples. DOI: 10.1002/elps.200410399 ; PMID: 15971193
- Sugar-inducible expression of the nucleolin-1 gene of Arabidopsis thaliana and its role in ribosome synthesis, growth and development. DOI: 10.1111/j.1365-313X.2006.03016.x ; PMID: 17286797
- Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. DOI: 10.1074/mcp.M700052-MCP200 ; PMID: 17934214
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Differential phosphorylation of ribosomal proteins in Arabidopsis thaliana plants during day and night. DOI: 10.1371/journal.pone.0029307 ; PMID: 22195043
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Plant cytoplasmic ribosomal proteins: an update on classification, nomenclature, evolution and resources. DOI: 10.1111/tpj.15667 ; PMID: 35000252
- An updated nomenclature for plant ribosomal protein genes. DOI: 10.1093/plcell/koac333 ; PMID: 36423343
- The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome. DOI: 6834 ; PMID: 11598216
- The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. DOI: 10.1016/j.cub.2004.02.039 ; PMID: 15028209
- Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. DOI: 10.1104/pp.104.053637 ; PMID: 15734919
- High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. DOI: 10.1007/s11103-005-0699-3 ; PMID: 15821981
- Evaluation of two-dimensional electrophoresis and liquid chromatography–tandem mass spectrometry for tissue-specific protein profiling of laser-microdissected plant samples. DOI: 10.1002/elps.200410399 ; PMID: 15971193
- Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis. DOI: 10.1074/mcp.M600429-MCP200 ; PMID: 17317660
- Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. DOI: 10.1074/mcp.M700052-MCP200 ; PMID: 17934214
Gene Resources
- UniProt: A0A178VBG6
- EMBL: CACRSJ010000106, CACSHJ010000089, LR881468
- AlphaFoldDB: A0A178VBG6
- EnsemblPlants: AT3G04840.1
- Gramene: AT3G04840.1
- KEGG: ath:AT3G04840
- Orthologous matrix: TRFKGHE
- ExpressionAtlas: AT3G04840
- InterPro: IPR001593, IPR018281, IPR027500
- PANTHER: PTHR11830
- PROSITE: PS01191
- OrthoDB: A0A178VBG6
- SWISS-MODEL: A0A178VBG6
Homologs
- Oryza sativa NAL21
Sequences
cDNA Sequence
- >AT3G04840.1
ATACAACTTTAGGCTTAGTCCATTACTGGTAAATTTGAAGGCCCAAAACTTTGTTTATCCTGGGTGTGAAACTCAAACCCTAGAAGAAGACTTTAAATTGAAGAAGCGCCGTAGCAGCATTTTAGGTTAAAACTTATTGTTGATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGGAAAAACAAGAGAATCTCTAAGGGTAGGAAGGGAGGAAAGAAGAAGGCTGTTGATCCTTTCTCCAAGAAAGATTGGTATGATGTTAAGGCTCCTTCAATCTTCACTCACAGGAATGTTGGAAAGACACTTGTTTCCAGAACTCAGGGTACCAAAATTGCCTCAGAAGGCTTGAAACACAGAGTTTTTGAGGTTTCTCTTGCTGATCTTCAAGGTGATGAGGATAACGCTTACAGGAAGATCCGTCTCAGAGCTGAAGATGTCCAGGGCAGGAACGTTCTGTGCCAATTCTGGGGCATGGACTTCACCACCGATAAACTTAGGTCATTGGTTAAGAAGTGGCAGACTTTGATTGAGGCTCATGTTGATGTTAAAACCACCGACAGTTACACTCTCAGGCTATTCTGTATCGCCTTCACCAAGAGACGTGCTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGACCTTAAGGATCTTGTTGCTAAGTTCATTCCTGAAGCTATTGGCAGGGAGATTGAGAAGGCAACTCAGGGCATCTACCCTCTTCAGAATGTTTTCATCCGTAAAGTCAAGATCCTCAAGGCCCCTAAATTCGACCTTGGCAAGCTCATGGATGTTCACGGAGATTACTCAGCAGAAGATGTTGGTGTTAAGGTAGACAGGCCGGCTGATGAGATGGCTGTTGAGGAACCTACTGAAATCATCGGAGCTTAAGAAATCGAGAGATGTCTTTTTCTTCTAAACTTTAGCTTTTTGATGCTCTGTCGTTTCACACACTCTTTTGTTCCCGGTTTAATTTTGCTGTATTGATGACTTTTCTCAGTGTAAACTTGCGAGTTTTTGATAATTTATGGAACACCTTTTCTCTAAATTTGATTCAGTTCCTCATTAAGAAAAACAAATTTCATAGGCCACAAAAAGTCTTTTTATGTACACTA
CDS Sequence
- >AT3G04840.1
ATGGCCGTCGGGAAAAACAAGAGAATCTCTAAGGGTAGGAAGGGAGGAAAGAAGAAGGCTGTTGATCCTTTCTCCAAGAAAGATTGGTATGATGTTAAGGCTCCTTCAATCTTCACTCACAGGAATGTTGGAAAGACACTTGTTTCCAGAACTCAGGGTACCAAAATTGCCTCAGAAGGCTTGAAACACAGAGTTTTTGAGGTTTCTCTTGCTGATCTTCAAGGTGATGAGGATAACGCTTACAGGAAGATCCGTCTCAGAGCTGAAGATGTCCAGGGCAGGAACGTTCTGTGCCAATTCTGGGGCATGGACTTCACCACCGATAAACTTAGGTCATTGGTTAAGAAGTGGCAGACTTTGATTGAGGCTCATGTTGATGTTAAAACCACCGACAGTTACACTCTCAGGCTATTCTGTATCGCCTTCACCAAGAGACGTGCTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGACCTTAAGGATCTTGTTGCTAAGTTCATTCCTGAAGCTATTGGCAGGGAGATTGAGAAGGCAACTCAGGGCATCTACCCTCTTCAGAATGTTTTCATCCGTAAAGTCAAGATCCTCAAGGCCCCTAAATTCGACCTTGGCAAGCTCATGGATGTTCACGGAGATTACTCAGCAGAAGATGTTGGTGTTAAGGTAGACAGGCCGGCTGATGAGATGGCTGTTGAGGAACCTACTGAAATCATCGGAGCTTAA
Protein Sequence
- >AT3G04840.1
MAVGKNKRISKGRKGGKKKAVDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDNAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVHGDYSAEDVGVKVDRPADEMAVEEPTEIIGA