Information report for AT3G04820
Gene Details
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Functional Descriptions
- GO:0009982 — enables — pseudouridine synthase activity
- GO:0009507 — located in — chloroplast
- GO:0001522 — involved in — pseudouridine synthesis
- GO:0003723 — enables — RNA binding
- GO:0005634 — is active in — nucleus
Functional Keywords
Literature and News
- A transcriptome-based characterization of habituation in plant tissue culture. DOI: 10.1104/pp.105.076059 ; PMID: 16489130
- Mutations in SUPPRESSOR OF VARIEGATION1, a factor required for normal chloroplast translation, suppress var2-mediated leaf variegation in Arabidopsis. DOI: 10.1105/tpc.107.054965 ; PMID: 18599582
- Genome-Wide Identification and Expression Analysis of Pseudouridine Synthase Family in Arabidopsis and Maize. DOI: 10.3390/ijms23052680 ; PMID: 35269820
- Mutations in SUPPRESSOR OF VARIEGATION1, a factor required for normal chloroplast translation, suppress var2-mediated leaf variegation in Arabidopsis. DOI: 10.1105/tpc.107.054965 ; PMID: 18599582
Gene Resources
- UniProt: Q5XVC2
- EMBL: AY735600, AY954844, CP002686
- AlphaFoldDB: Q5XVC2
- EnsemblPlants: AT3G04820.1
- Gramene: AT3G04820.1
- KEGG: ath:AT3G04820
- Orthologous matrix: WINYFGH
- ExpressionAtlas: AT3G04820
- InterPro: IPR001656, IPR011760, IPR020103
- PANTHER: PTHR13326, PTHR13326:SF21
- SUPFAM: SSF55120
- PROSITE: PS50984
- Gene3D: 3.30.2350.20
- SWISS-MODEL: Q5XVC2
- Conserved Domain Database: cd02576
Sequences
cDNA Sequence
- >AT3G04820.1
GTGCGTTTTACTGAGTATTCGATTTCAATGTCGTCGCCGTTCCGGTGAAGAAGGCAATGAAATTAAGTAGAACTGTCTTGTCTTGTTTGCCGTCTCTGCTAAAACCCTACTCGAGCTTGAGCTGGACAACGAAAATAGCGACGATAGCTACAAACTTTGAAGGTATGAAAACAGTAGATGAAGCTGACGTGGGCATCTCCTGTTTTATCTCCCAGCTCCCTGGCTTCCGTGGAATCCTCAAACAAAGATACGCAGACTTTATTGTTAATGAAGTAGATATGGATGGTAATGTGGTTCATTTGACATCCTTGGACTTGCCTCCTGAGATGGCTGTGAAGGAGGAGGATAAAGCGAAAAGTTGTGATAATGTACCCCAAAATTATACTTCTGCAGTTGAGTCTTTCAAATCTATTTCCAGTGTTACTGATGCAGAGCGTTTGGAAATATTGATCAATCAAGTCACCTCAGGAACTGATGGTGAAGTCTTACCAGTTGTTCTTGATCCAAGTTCTGACAAATCCAAGAGAACGGCTATCCACAACTTTGTTAAAGAGAATTTCAAGTTCCTAGTGACTGACACTGTCGACGGTCCTGATTCTACTTCAAAATGCATCCGTGTGCGAGTGAATTCAGGAGCCAATAACAACAGAGGTAATAGATCAAAAAAACGAAAGGAAAGAGGCGATAAGCCTTTTGATAGCAGAGGTTCAGAGCATTGGCCAGAGCATGTTGGCAAGTTTCTCAGGTTCCATCTTTACAAGGAGAACAAAGATACACAAGAGGCCTTGGGATTGATTGGAAAGATGCTAGGCGTTCAGCCAAAGTCATTCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACTCAGCGTGTAACTGTGTTCAAACAGCAAGCTAGCAAATTGGCTGCGCTTAACAAGAGATTGTTTGGGATCAAAGTTGGTGACTTCTGCAATGTCAAAGAGGGCCTTCTCCTTGGGCAGCTCATGGGAAACAGATTTACTATCACATTAAGAGGAGTGGTTGCGGATTCTGAAGAAACTATAAAACAATCTGCAGAATCCTTGGGGAAAGATGGCTTCATCAACTACTTTGGCTTGCAGCGTTTTGGAAGTGGTTCAGTACCAACCCACCATGTAGGAGCTGCACTATTGAAAGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAACTGAAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACATTGACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAGCCATACTGCAGTGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGCATTCCCAGAACTTTGAGAATGATGTATGTACATAGTTATCAAAGCTACTTATGGAACAATGCAGCAAGTCTGCGCGTCAAAAATTATGGAACCAGCCAAGTTGTGTTGGGGGACTTGGTAAGTACAAAGGTAGATGCTGCAAAAAGAATGGTCGACAGTCTTACCTCTGAGCACAACGAAAGCAGCGAAGAGGCATTGGATTGTGACCAGGTAGATGATACTGCTGTTGTAGATCTTCCAGCTGAAAGGAGTGACCTTGTTAAGGTTGTAAGTATAGAGGATTTGGAAGCTGGAACTTACTCGACCAGTGACATCGTCCTCCCTCTACCTGGTTCAAGAGTCATCTACCCGTCTAATGACATTGCAGAAATTTATCATGATTTGGCAAAGAAGGACGGTATCAGCCTAACTGAGAGCATTCACGGTGTAAAGGAATTCTCAATAACTAGCATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATGGGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATCTGGACAGGATACCCATGAACAAGCCGGTGGAGAAAGTTGGATCTACTGAGGAAATTGAAGATGAATCAATGAAATCTGATACTAACCCACATGATTCTGGTGAAACCAATTTGAAAGACCAGACAGATAGCAATGAGGCTGAAAAAGACACTGGAAATCCAGATTCTGAGCAGACACAGATGGCGCTTAAAATGGCACTCACTCTTCCATCTTCTTGTTATGCCACAATGGCAATCAGAGAACTATTAAAGACGTCAACTTCTGTTGCATATCACAAGACACTTAACTAGTGATTAACATCCGCTCCTCCTGGCTAGCACACACTGCGTATAAAGCCATTTGCTGGTTATATTACTCTGTTTCAGACACTTAACTAGTGATTCTATCTTGTCTATTTTAAACATGTGTACATTCATGTATTTGTGCGGAAGTTCAGGAAATTTTGTCTGAAATAAGCACCAAAATAGAATTTTGGTAACCGGCCAAGTTTTTTCTAGAATTTCAATGTATCAGAC
CDS Sequence
- >AT3G04820.1
ATGAAATTAAGTAGAACTGTCTTGTCTTGTTTGCCGTCTCTGCTAAAACCCTACTCGAGCTTGAGCTGGACAACGAAAATAGCGACGATAGCTACAAACTTTGAAGGTATGAAAACAGTAGATGAAGCTGACGTGGGCATCTCCTGTTTTATCTCCCAGCTCCCTGGCTTCCGTGGAATCCTCAAACAAAGATACGCAGACTTTATTGTTAATGAAGTAGATATGGATGGTAATGTGGTTCATTTGACATCCTTGGACTTGCCTCCTGAGATGGCTGTGAAGGAGGAGGATAAAGCGAAAAGTTGTGATAATGTACCCCAAAATTATACTTCTGCAGTTGAGTCTTTCAAATCTATTTCCAGTGTTACTGATGCAGAGCGTTTGGAAATATTGATCAATCAAGTCACCTCAGGAACTGATGGTGAAGTCTTACCAGTTGTTCTTGATCCAAGTTCTGACAAATCCAAGAGAACGGCTATCCACAACTTTGTTAAAGAGAATTTCAAGTTCCTAGTGACTGACACTGTCGACGGTCCTGATTCTACTTCAAAATGCATCCGTGTGCGAGTGAATTCAGGAGCCAATAACAACAGAGGTAATAGATCAAAAAAACGAAAGGAAAGAGGCGATAAGCCTTTTGATAGCAGAGGTTCAGAGCATTGGCCAGAGCATGTTGGCAAGTTTCTCAGGTTCCATCTTTACAAGGAGAACAAAGATACACAAGAGGCCTTGGGATTGATTGGAAAGATGCTAGGCGTTCAGCCAAAGTCATTCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACTCAGCGTGTAACTGTGTTCAAACAGCAAGCTAGCAAATTGGCTGCGCTTAACAAGAGATTGTTTGGGATCAAAGTTGGTGACTTCTGCAATGTCAAAGAGGGCCTTCTCCTTGGGCAGCTCATGGGAAACAGATTTACTATCACATTAAGAGGAGTGGTTGCGGATTCTGAAGAAACTATAAAACAATCTGCAGAATCCTTGGGGAAAGATGGCTTCATCAACTACTTTGGCTTGCAGCGTTTTGGAAGTGGTTCAGTACCAACCCACCATGTAGGAGCTGCACTATTGAAAGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAACTGAAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACATTGACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAGCCATACTGCAGTGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGCATTCCCAGAACTTTGAGAATGATGTATGTACATAGTTATCAAAGCTACTTATGGAACAATGCAGCAAGTCTGCGCGTCAAAAATTATGGAACCAGCCAAGTTGTGTTGGGGGACTTGGTAAGTACAAAGGTAGATGCTGCAAAAAGAATGGTCGACAGTCTTACCTCTGAGCACAACGAAAGCAGCGAAGAGGCATTGGATTGTGACCAGGTAGATGATACTGCTGTTGTAGATCTTCCAGCTGAAAGGAGTGACCTTGTTAAGGTTGTAAGTATAGAGGATTTGGAAGCTGGAACTTACTCGACCAGTGACATCGTCCTCCCTCTACCTGGTTCAAGAGTCATCTACCCGTCTAATGACATTGCAGAAATTTATCATGATTTGGCAAAGAAGGACGGTATCAGCCTAACTGAGAGCATTCACGGTGTAAAGGAATTCTCAATAACTAGCATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATGGGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATCTGGACAGGATACCCATGAACAAGCCGGTGGAGAAAGTTGGATCTACTGAGGAAATTGAAGATGAATCAATGAAATCTGATACTAACCCACATGATTCTGGTGAAACCAATTTGAAAGACCAGACAGATAGCAATGAGGCTGAAAAAGACACTGGAAATCCAGATTCTGAGCAGACACAGATGGCGCTTAAAATGGCACTCACTCTTCCATCTTCTTGTTATGCCACAATGGCAATCAGAGAACTATTAAAGACGTCAACTTCTGTTGCATATCACAAGACACTTAACTAG
Protein Sequence
- >AT3G04820.1
MKLSRTVLSCLPSLLKPYSSLSWTTKIATIATNFEGMKTVDEADVGISCFISQLPGFRGILKQRYADFIVNEVDMDGNVVHLTSLDLPPEMAVKEEDKAKSCDNVPQNYTSAVESFKSISSVTDAERLEILINQVTSGTDGEVLPVVLDPSSDKSKRTAIHNFVKENFKFLVTDTVDGPDSTSKCIRVRVNSGANNNRGNRSKKRKERGDKPFDSRGSEHWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVSTQRVTVFKQQASKLAALNKRLFGIKVGDFCNVKEGLLLGQLMGNRFTITLRGVVADSEETIKQSAESLGKDGFINYFGLQRFGSGSVPTHHVGAALLKGEWKDAVDMILDPRETERHVVNDAREYYKETGDIDGTLRQLPRYLVAERAILQCLKKCPGNYLQALKGIPRTLRMMYVHSYQSYLWNNAASLRVKNYGTSQVVLGDLVSTKVDAAKRMVDSLTSEHNESSEEALDCDQVDDTAVVDLPAERSDLVKVVSIEDLEAGTYSTSDIVLPLPGSRVIYPSNDIAEIYHDLAKKDGISLTESIHGVKEFSITSMTGGYRRVFQKPIDFEWELLTYTDSNKPLAETDLDRIPMNKPVEKVGSTEEIEDESMKSDTNPHDSGETNLKDQTDSNEAEKDTGNPDSEQTQMALKMALTLPSSCYATMAIRELLKTSTSVAYHKTLN