Gene Details:
- Gene ID: AT3G04510
- Gene Symbol: LSH2
- Gene Name: LIGHT SENSITIVE HYPOCOTYLS 2
- Description: LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640);(source:Araport11)
- TAIR Accession: locus:2100850
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
Gene Ontology:
- GO:0009299 — involved in — mRNA transcription
- GO:0005634 — is active in — nucleus
- GO:0005634 — located in — nucleus
- GO:0009416 — involved in — response to light stimulus
- GO:0009414 — acts upstream of or within — response to water deprivation
- GO:0048878 — acts upstream of or within — chemical homeostasis
- GO:0090698 — involved in — post-embryonic plant morphogenesis
Function-related keywords:
Literature:
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Overexpression of LSH1, a member of an uncharacterised gene family, causes enhanced light regulation of seedling development. DOI: 10.1111/j.1365-313x.2003.01993.x ; PMID: 14871309
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
Sequences:
cDNA Sequence
- >AT3G04510.1
GTGTCTTAAATGGAAAATATATGATTTCTGATGATCAGTCTCACGACTCTCATCTCTTTCTCTTTCTCTATAAATGACCTATTATGATGTTTATGCAGCTATATATATGGACATTTGTGTCTGTATTTTTCTATCCATCTTCTCATTCTATAGTAGAAAAGAGGAAAAACACAAAAGACAACAGTAGAAAAGGAGAAAGAAAGAAAAAATCTCACTTTGATTTCTTCTACTTATATCTCTCATCTTGCAAAAAAGCAAGAGGTCTCTTCTTATTTTGCAGGTTGTTCCTCTTTGCCTCACCATATTTGAACAACATCATCATCACTGAATCTATCCTTTTTTGTAGCACCTACCTCACCACTTTGCAGTACAAGGAAGTAGCCAAGTGCTAATTCTATCTCTCTTTTTAGTTATTTATTATATATATCCTTTAACCAGAAAAAGTTATTTATTATAAATAACTTAAAACCTAATCTTTGCCCTAAATCACTCAACTCGATCTGGAGAAAGAACCCTAATTTGGAAACATATCTAAAAAGCTATGGATTTGATCTCTCAAAACCACAACAACAGAAACCCTAATACCAGTCTCTCGACGCAAACCCCTTCTTCCTTTTCTTCTCCACCTTCCTCTAGCCGCTACGAGAACCAGAAACGCCGTGACTGGAACACTTTCTGCCAATACCTCAGAAACCACCATCCACCGCTCTCTCTAGCTTCTTGCAGTGGCGCACACGTCCTCGATTTTCTGCGTTACCTTGACCAATTCGGCAAAACCAAAGTCCACCACCAAAACTGCGCCTTCTTTGGCCTCCCAAATCCACCGGCTCCTTGTCCTTGTCCTCTCCGACAAGCCTGGGGCTCACTCGACGCCCTCATTGGTCGTCTCCGTGCAGCCTACGAGGAGAACGGTGGCGCTCCCGAGACTAGCCCTTTTGGCTCACGGTCCGTCAGGATTTTCCTCAGGGAGGTTAGAGATTTCCAGGCTAAGTCACGTGGTGTTAGCTATGAGAAGAAGAGGAAAAGGGTCAACAACAAGCAAATAACTCAGTCCCAACCACAGTCCCAACCGCCTTTACCCCAGCAGCCACAGCAGGAGCAAGGTCAGTCTATGATGGCTAATTACCACCACGGTGCAACTCAATAATGTCGTATAACTTTATGTATGCTCGCATCTAGCTATTTATATCTACGTATCAACCTTTGTATTCGTGTAACGCAATCCCTATTCTCCTCCACCCACTGTTAATTTATATCATTGTTTCTTAATTAGACCTATTGTTTTGTTTTTCTTATAATCAATAAATGAAAAGAACTTGGATTTTA
CDS Sequence
- >AT3G04510.1
ATGGATTTGATCTCTCAAAACCACAACAACAGAAACCCTAATACCAGTCTCTCGACGCAAACCCCTTCTTCCTTTTCTTCTCCACCTTCCTCTAGCCGCTACGAGAACCAGAAACGCCGTGACTGGAACACTTTCTGCCAATACCTCAGAAACCACCATCCACCGCTCTCTCTAGCTTCTTGCAGTGGCGCACACGTCCTCGATTTTCTGCGTTACCTTGACCAATTCGGCAAAACCAAAGTCCACCACCAAAACTGCGCCTTCTTTGGCCTCCCAAATCCACCGGCTCCTTGTCCTTGTCCTCTCCGACAAGCCTGGGGCTCACTCGACGCCCTCATTGGTCGTCTCCGTGCAGCCTACGAGGAGAACGGTGGCGCTCCCGAGACTAGCCCTTTTGGCTCACGGTCCGTCAGGATTTTCCTCAGGGAGGTTAGAGATTTCCAGGCTAAGTCACGTGGTGTTAGCTATGAGAAGAAGAGGAAAAGGGTCAACAACAAGCAAATAACTCAGTCCCAACCACAGTCCCAACCGCCTTTACCCCAGCAGCCACAGCAGGAGCAAGGTCAGTCTATGATGGCTAATTACCACCACGGTGCAACTCAATAA
Protein Sequence
- >AT3G04510.1
MDLISQNHNNRNPNTSLSTQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQSQPQSQPPLPQQPQQEQGQSMMANYHHGATQ