Gene Details:
- Gene ID: AT3G04400
- Gene Symbol: emb2171, RPL23, uL14y
- Gene Name: embryo defective 2171, Ribosomal Protein uL14y
- Description: Ribosomal protein L14p/L23e family protein;(source:Araport11)
- TAIR Accession: locus:2100915
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Gene Ontology:
- GO:0009507 — located in — chloroplast
- GO:0009793 — acts upstream of or within — embryo development ending in seed dormancy
- GO:0006412 — involved in — translation
- GO:0005829 — located in — cytosol
Germplasm Phenotype:
- CS16043 — embryo defective; developmental arrest of mutant embryos
- SALK_081333 — Compromised nonhost resistance against P. syringae pv. tomato T1 and P. syringae pv. tabaci.
Literature:
- The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome. DOI: 6834 ; PMID: 11598216
- The Arabidopsis HUELLENLOS gene, which is essential for normal ovule development, encodes a mitochondrial ribosomal protein. DOI: 10.1105/tpc.010323 ; PMID: 11752383
- Identification of genes required for embryo development in Arabidopsis. DOI: 10.1104/pp.104.045179 ; PMID: 15266054
- Expression profiling of auxin-treated Arabidopsis roots: toward a molecular analysis of lateral root emergence. DOI: 10.1093/pcp/pcj043 ; PMID: 16621846
- The heavy metal hyperaccumulator Thlaspi caerulescens expresses many species-specific genes, as identified by comparative expressed sequence tag analysis. DOI: 10.1111/j.1469-8137.2006.01714.x ; PMID: 16684236
- The Arabidopsis thaliana transcriptome in response to Agrobacterium tumefaciens. DOI: 10.1094/MPMI-19-0665 ; PMID: 16776300
- Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. DOI: 10.1074/mcp.M700052-MCP200 ; PMID: 17934214
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis. DOI: 10.1111/nph.16071 ; PMID: 31334862
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Ribosomal protein QM/RPL10 positively regulates defence and protein translation mechanisms during nonhost disease resistance. DOI: 10.1111/mpp.12991 ; PMID: 32964634
- Plant cytoplasmic ribosomal proteins: an update on classification, nomenclature, evolution and resources. DOI: 10.1111/tpj.15667 ; PMID: 35000252
- An updated nomenclature for plant ribosomal protein genes. DOI: 10.1093/plcell/koac333 ; PMID: 36423343
- Involvement of Target of Rapamycin (TOR) Signaling in the Regulation of Crosstalk between Ribosomal Protein Small Subunit 6 Kinase-1 (RPS6K-1) and Ribosomal Proteins. DOI: 10.3390/plants12010176 ; PMID: 36616305
- Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. DOI: 10.1074/mcp.M700052-MCP200 ; PMID: 17934214
Sequences:
cDNA Sequence
- >AT3G04400.1
CATGAAGAAAACCCTAGTTCAAGCGTATATAAACCCTCTCGGCGCTGCCATTGAAACTCTTTCAAGGAGAGAGCTGCTACTCTGCAACCATGTCGAAGCGAGGAAGAGGAGGAACCTCTGGTAACAAGTTCAGGATGTCACTGGGTCTTCCAGTGGCAGCCACTGTGAACTGTGCTGACAACACCGGAGCTAAGAACCTTTACATCATTTCGGTTAAAGGAATCAAGGGTCGTCTTAACCGTTTGCCATCAGCGTGTGTTGGTGATATGGTTATGGCTACTGTTAAGAAAGGTAAGCCTGATCTCCGTAAGAAGGTGCTTCCTGCTGTCATTGTTAGGCAGAGGAAGCCTTGGCGCCGAAAGGACGGTGTCTTCATGTATTTCGAAGATAATGCTGGTGTCATTGTCAATCCCAAGGGTGAAATGAAAGGATCTGCTATCACTGGACCAATCGGAAAGGAGTGTGCTGATCTGTGGCCAAGAATCGCAAGTGCTGCGAACGCCATCGTTTAAGCAAGCTTGAGATCTCTATGTTTTGTGTTGAACGTTTAGCATTATCTCTATTTGGGATTGTTTTTTGTTTTTGTCTTAGACTTTTGTTATGCCTTAAAGCTGATTCTAGTTCTTATAAGAACCTTCGTTTCTCGTGCCAGTTTGTCACCTCAGTGTTTTAGTCTATCGTAAACTTGTGATTTGATTCACTGGTTCTTGTGTTTGTTCGGTTTTGTTTTAAAAAACATAGAATTCAAGTGATTCACACTATTTTGTTACGCAATTAGAAATATGTTTAGGGCGAATCAATTGTGTGAACAGACTTAAGTAGAGCCTAAAAATTTGTATATAACTCTTATATTAGCAAGTCAATTGTGGATTTGGGAATCTGTTTTTCAATATTTCATGAATAATAGGAAAATTGTGTATATATCCG - >AT3G04400.2
CATGAAGAAAACCCTAGTTCAAGCGTATATAAACCCTCTCGGCGCTGCCATTGAAACTCTTTCAAGGAGAGAGCTGCTACTCTGCAACCATGTCGAAGCGAGGAAGAGGAGGAACCTCTGGTAACAAGTTCAGGATGTCACTGGGTCTTCCAGTGGCAGCCACTGTGAACTGTGCTGACAACACCGGAGCTAAGAACCTTTACATCATTTCGGTTAAAGGAATCAAGGGTCGTCTTAACCGTTTGCCATCAGCGTGTGTTGGTGATATGGTTATGGCTACTGTTAAGAAAGGTAAGCCTGATCTCCGTAAGAAGGTGCTTCCTGCTGTCATTGTTAGGCAGAGGAAGCCTTGGCGCCGAAAGGACGGTGTCTTCATGTATTTCGAAGATAATGCTGGTGTCATTGTCAATCCCAAGGGTGAAATGAAAGGATCTGCTATCACTGGACCAATCGGAAAGGAGTGTGCTGATCTGTGGCCAAGAATCGCAAGTGCTGCGAACGCCATCGTTTAAGCAAGCTTGAGATCTCTATGTTTTGTGTTGAACGTTTAGCATTATCTCTATTTGGGATTGTTTTTTGTTTTTGTCTTAGACTTTTGTTATGCCTTAAAGCTGATTCTAGTTCTTATAAGAACCTTCGTTTCTCGTGCCAGTTTGTCACCTCAGTGTTTTAGTCTATCGTAAACTTGTGATTTGATTCACTGGTTCTTGTGTTTGTTCGGTTTTGTTTTAAAAAACATAGAATTCAAGTGATTCACACTATTTTGTTACGCAATTAGAAATATGTTTAGGGCGAATCAATTGTGTGAACAGACTTAAGTAGAGCCTAAAAATTTGTATATAACTCTTATATTAGCAAGTCAATTGTGGATTTGGGAATCTGTTTTTCAATATTTCATGAATAATAGGAAAATTGTGTATATATCCG
CDS Sequence
- >AT3G04400.1
ATGTCGAAGCGAGGAAGAGGAGGAACCTCTGGTAACAAGTTCAGGATGTCACTGGGTCTTCCAGTGGCAGCCACTGTGAACTGTGCTGACAACACCGGAGCTAAGAACCTTTACATCATTTCGGTTAAAGGAATCAAGGGTCGTCTTAACCGTTTGCCATCAGCGTGTGTTGGTGATATGGTTATGGCTACTGTTAAGAAAGGTAAGCCTGATCTCCGTAAGAAGGTGCTTCCTGCTGTCATTGTTAGGCAGAGGAAGCCTTGGCGCCGAAAGGACGGTGTCTTCATGTATTTCGAAGATAATGCTGGTGTCATTGTCAATCCCAAGGGTGAAATGAAAGGATCTGCTATCACTGGACCAATCGGAAAGGAGTGTGCTGATCTGTGGCCAAGAATCGCAAGTGCTGCGAACGCCATCGTTTAA - >AT3G04400.2
ATGTCGAAGCGAGGAAGAGGAGGAACCTCTGGTAACAAGTTCAGGATGTCACTGGGTCTTCCAGTGGCAGCCACTGTGAACTGTGCTGACAACACCGGAGCTAAGAACCTTTACATCATTTCGGTTAAAGGAATCAAGGGTCGTCTTAACCGTTTGCCATCAGCGTGTGTTGGTGATATGGTTATGGCTACTGTTAAGAAAGGTAAGCCTGATCTCCGTAAGAAGGTGCTTCCTGCTGTCATTGTTAGGCAGAGGAAGCCTTGGCGCCGAAAGGACGGTGTCTTCATGTATTTCGAAGATAATGCTGGTGTCATTGTCAATCCCAAGGGTGAAATGAAAGGATCTGCTATCACTGGACCAATCGGAAAGGAGTGTGCTGATCTGTGGCCAAGAATCGCAAGTGCTGCGAACGCCATCGTTTAA
Protein Sequence
- >AT3G04400.1
MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV - >AT3G04400.2
MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV