Information report for AT3G04400
Gene Details
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Functional Descriptions
- GO:0009507 — located in — chloroplast
- GO:0009793 — acts upstream of or within — embryo development ending in seed dormancy
- GO:0006412 — involved in — translation
- GO:0005829 — located in — cytosol
- CS16043 — embryo defective; developmental arrest of mutant embryos
- SALK_081333 — Compromised nonhost resistance against P. syringae pv. tomato T1 and P. syringae pv. tabaci.
Functional Keywords
Literature and News
- The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome. DOI: 6834 ; PMID: 11598216
- The Arabidopsis HUELLENLOS gene, which is essential for normal ovule development, encodes a mitochondrial ribosomal protein. DOI: 10.1105/tpc.010323 ; PMID: 11752383
- Identification of genes required for embryo development in Arabidopsis. DOI: 10.1104/pp.104.045179 ; PMID: 15266054
- Expression profiling of auxin-treated Arabidopsis roots: toward a molecular analysis of lateral root emergence. DOI: 10.1093/pcp/pcj043 ; PMID: 16621846
- The heavy metal hyperaccumulator Thlaspi caerulescens expresses many species-specific genes, as identified by comparative expressed sequence tag analysis. DOI: 10.1111/j.1469-8137.2006.01714.x ; PMID: 16684236
- The Arabidopsis thaliana transcriptome in response to Agrobacterium tumefaciens. DOI: 10.1094/MPMI-19-0665 ; PMID: 16776300
- Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. DOI: 10.1074/mcp.M700052-MCP200 ; PMID: 17934214
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis. DOI: 10.1111/nph.16071 ; PMID: 31334862
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Ribosomal protein QM/RPL10 positively regulates defence and protein translation mechanisms during nonhost disease resistance. DOI: 10.1111/mpp.12991 ; PMID: 32964634
- Plant cytoplasmic ribosomal proteins: an update on classification, nomenclature, evolution and resources. DOI: 10.1111/tpj.15667 ; PMID: 35000252
- An updated nomenclature for plant ribosomal protein genes. DOI: 10.1093/plcell/koac333 ; PMID: 36423343
- Involvement of Target of Rapamycin (TOR) Signaling in the Regulation of Crosstalk between Ribosomal Protein Small Subunit 6 Kinase-1 (RPS6K-1) and Ribosomal Proteins. DOI: 10.3390/plants12010176 ; PMID: 36616305
- Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. DOI: 10.1074/mcp.M700052-MCP200 ; PMID: 17934214
Gene Resources
- UniProt: A0A384L7B8
- EMBL: CACRSJ010000104, CACRSJ010000105, CACRSJ010000106
- AlphaFoldDB: A0A384L7B8
- EnsemblPlants: AT1G04480.1, AT2G33370.1, AT3G04400.1
- Gramene: AT1G04480.1, AT2G33370.1, AT3G04400.1
- KEGG: ath:AT1G04480, ath:AT2G33370, ath:AT3G04400
- Orthologous matrix: IRQSKPW
- ExpressionAtlas: AT3G04400
- InterPro: IPR000218, IPR019972, IPR036853
- PANTHER: PTHR11761, PTHR11761:SF8
- SUPFAM: SSF50193
- PROSITE: PS00049
- Gene3D: 2.40.150.20
- OrthoDB: A0A384L7B8
- SWISS-MODEL: A0A384L7B8
- Conserved Domain Database: cd00337
Homologs
- Oryza sativa HLL
Sequences
cDNA Sequence
- >AT3G04400.1
CATGAAGAAAACCCTAGTTCAAGCGTATATAAACCCTCTCGGCGCTGCCATTGAAACTCTTTCAAGGAGAGAGCTGCTACTCTGCAACCATGTCGAAGCGAGGAAGAGGAGGAACCTCTGGTAACAAGTTCAGGATGTCACTGGGTCTTCCAGTGGCAGCCACTGTGAACTGTGCTGACAACACCGGAGCTAAGAACCTTTACATCATTTCGGTTAAAGGAATCAAGGGTCGTCTTAACCGTTTGCCATCAGCGTGTGTTGGTGATATGGTTATGGCTACTGTTAAGAAAGGTAAGCCTGATCTCCGTAAGAAGGTGCTTCCTGCTGTCATTGTTAGGCAGAGGAAGCCTTGGCGCCGAAAGGACGGTGTCTTCATGTATTTCGAAGATAATGCTGGTGTCATTGTCAATCCCAAGGGTGAAATGAAAGGATCTGCTATCACTGGACCAATCGGAAAGGAGTGTGCTGATCTGTGGCCAAGAATCGCAAGTGCTGCGAACGCCATCGTTTAAGCAAGCTTGAGATCTCTATGTTTTGTGTTGAACGTTTAGCATTATCTCTATTTGGGATTGTTTTTTGTTTTTGTCTTAGACTTTTGTTATGCCTTAAAGCTGATTCTAGTTCTTATAAGAACCTTCGTTTCTCGTGCCAGTTTGTCACCTCAGTGTTTTAGTCTATCGTAAACTTGTGATTTGATTCACTGGTTCTTGTGTTTGTTCGGTTTTGTTTTAAAAAACATAGAATTCAAGTGATTCACACTATTTTGTTACGCAATTAGAAATATGTTTAGGGCGAATCAATTGTGTGAACAGACTTAAGTAGAGCCTAAAAATTTGTATATAACTCTTATATTAGCAAGTCAATTGTGGATTTGGGAATCTGTTTTTCAATATTTCATGAATAATAGGAAAATTGTGTATATATCCG - >AT3G04400.2
CATGAAGAAAACCCTAGTTCAAGCGTATATAAACCCTCTCGGCGCTGCCATTGAAACTCTTTCAAGGAGAGAGCTGCTACTCTGCAACCATGTCGAAGCGAGGAAGAGGAGGAACCTCTGGTAACAAGTTCAGGATGTCACTGGGTCTTCCAGTGGCAGCCACTGTGAACTGTGCTGACAACACCGGAGCTAAGAACCTTTACATCATTTCGGTTAAAGGAATCAAGGGTCGTCTTAACCGTTTGCCATCAGCGTGTGTTGGTGATATGGTTATGGCTACTGTTAAGAAAGGTAAGCCTGATCTCCGTAAGAAGGTGCTTCCTGCTGTCATTGTTAGGCAGAGGAAGCCTTGGCGCCGAAAGGACGGTGTCTTCATGTATTTCGAAGATAATGCTGGTGTCATTGTCAATCCCAAGGGTGAAATGAAAGGATCTGCTATCACTGGACCAATCGGAAAGGAGTGTGCTGATCTGTGGCCAAGAATCGCAAGTGCTGCGAACGCCATCGTTTAAGCAAGCTTGAGATCTCTATGTTTTGTGTTGAACGTTTAGCATTATCTCTATTTGGGATTGTTTTTTGTTTTTGTCTTAGACTTTTGTTATGCCTTAAAGCTGATTCTAGTTCTTATAAGAACCTTCGTTTCTCGTGCCAGTTTGTCACCTCAGTGTTTTAGTCTATCGTAAACTTGTGATTTGATTCACTGGTTCTTGTGTTTGTTCGGTTTTGTTTTAAAAAACATAGAATTCAAGTGATTCACACTATTTTGTTACGCAATTAGAAATATGTTTAGGGCGAATCAATTGTGTGAACAGACTTAAGTAGAGCCTAAAAATTTGTATATAACTCTTATATTAGCAAGTCAATTGTGGATTTGGGAATCTGTTTTTCAATATTTCATGAATAATAGGAAAATTGTGTATATATCCG
CDS Sequence
- >AT3G04400.1
ATGTCGAAGCGAGGAAGAGGAGGAACCTCTGGTAACAAGTTCAGGATGTCACTGGGTCTTCCAGTGGCAGCCACTGTGAACTGTGCTGACAACACCGGAGCTAAGAACCTTTACATCATTTCGGTTAAAGGAATCAAGGGTCGTCTTAACCGTTTGCCATCAGCGTGTGTTGGTGATATGGTTATGGCTACTGTTAAGAAAGGTAAGCCTGATCTCCGTAAGAAGGTGCTTCCTGCTGTCATTGTTAGGCAGAGGAAGCCTTGGCGCCGAAAGGACGGTGTCTTCATGTATTTCGAAGATAATGCTGGTGTCATTGTCAATCCCAAGGGTGAAATGAAAGGATCTGCTATCACTGGACCAATCGGAAAGGAGTGTGCTGATCTGTGGCCAAGAATCGCAAGTGCTGCGAACGCCATCGTTTAA - >AT3G04400.2
ATGTCGAAGCGAGGAAGAGGAGGAACCTCTGGTAACAAGTTCAGGATGTCACTGGGTCTTCCAGTGGCAGCCACTGTGAACTGTGCTGACAACACCGGAGCTAAGAACCTTTACATCATTTCGGTTAAAGGAATCAAGGGTCGTCTTAACCGTTTGCCATCAGCGTGTGTTGGTGATATGGTTATGGCTACTGTTAAGAAAGGTAAGCCTGATCTCCGTAAGAAGGTGCTTCCTGCTGTCATTGTTAGGCAGAGGAAGCCTTGGCGCCGAAAGGACGGTGTCTTCATGTATTTCGAAGATAATGCTGGTGTCATTGTCAATCCCAAGGGTGAAATGAAAGGATCTGCTATCACTGGACCAATCGGAAAGGAGTGTGCTGATCTGTGGCCAAGAATCGCAAGTGCTGCGAACGCCATCGTTTAA
Protein Sequence
- >AT3G04400.1
MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV - >AT3G04400.2
MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV