Information report for AT3G04260
Gene Details
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Functional Descriptions
- GO:0006351 — acts upstream of or within — DNA-templated transcription
- GO:0042644 — located in — chloroplast nucleoid
- GO:0009416 — acts upstream of or within — response to light stimulus
- GO:0009266 — acts upstream of or within — response to temperature stimulus
- GO:0009507 — located in — chloroplast
- GO:0010468 — acts upstream of or within — regulation of gene expression
Functional Keywords
Literature and News
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- pTAC2, -6, and -12 are components of the transcriptionally active plastid chromosome that are required for plastid gene expression. DOI: 10.1105/tpc.105.036392 ; PMID: 16326926
- Development of Arabidopsis whole-genome microarrays and their application to the discovery of binding sites for the TGA2 transcription factor in salicylic acid-treated plants. DOI: 10.1111/j.1365-313X.2006.02770.x ; PMID: 16824183
- The Arabidopsis thaliana homolog of yeast BRE1 has a function in cell cycle regulation during early leaf and root growth. DOI: 10.1105/tpc.106.041319 ; PMID: 17329565
- Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. DOI: 10.1093/molbev/msq204 ; PMID: 20736450
- Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. DOI: 10.1104/pp.110.168120 ; PMID: 21139083
- Identification of essential subunits in the plastid-encoded RNA polymerase complex reveals building blocks for proper plastid development. DOI: 10.1104/pp.111.184515 ; PMID: 21949211
- Phosphoproteomics of Arabidopsis chloroplasts reveals involvement of the STN7 kinase in phosphorylation of nucleoid protein pTAC16. DOI: 10.1016/j.febslet.2012.03.061 ; PMID: 22616989
- Cytokinin-Regulated Expression of Arabidopsis thaliana PAP Genes and Its Implication for the Expression of Chloroplast-Encoded Genes. DOI: 10.3390/biom10121658 ; PMID: 33322466
- Arabidopsis Seedling Lethal 1 Interacting With Plastid-Encoded RNA Polymerase Complex Proteins Is Essential for Chloroplast Development. DOI: 10.3389/fpls.2020.602782 ; PMID: 33391315
- pTAC2, -6, and -12 are components of the transcriptionally active plastid chromosome that are required for plastid gene expression. DOI: 10.1105/tpc.105.036392 ; PMID: 16326926
- Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques. DOI: 10.1021/pr060525b ; PMID: 17432890
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
Gene Resources
- UniProt: F4J3M2
- EMBL: CP002686
- AlphaFoldDB: F4J3M2
- EnsemblPlants: AT3G04260.1
- Gramene: AT3G04260.1
- KEGG: ath:AT3G04260
- Orthologous matrix: HETFMAL
- ExpressionAtlas: AT3G04260
- InterPro: IPR003034, IPR011990, IPR036361
- PANTHER: PTHR47447, PTHR47447:SF25
- SUPFAM: SSF68906
- PROSITE: PS50800
- Gene3D: 1.10.720.30, 1.25.40.10
- SWISS-MODEL: F4J3M2
Homologs
- Arachis hypogaea arahy.Tifrunner.gnm1.ann1.HV5MI3
- Brassica oleracea Bol041075
- Oryza sativa OsWSL3, WSL5;OsPPR4
Sequences
cDNA Sequence
- >AT3G04260.1
CTAAATTTCAAATCACTTTATCCATTCCCCAGTAAAAAAAAAGTTTCAGACTTTGGCAAAAAAAAAATGTCACTCTTGTTCCTCAATCCTCCGTTTCCCTCCAATTCAATCCACCCAATTCCTCGTCGTGCCGCCGGAATATCCTCCATTCGATGCTCAATTTCTGCACCGGAGAAGAAACCGAGGAGGAGGAGGAAGCAGAAGCGCGGCGACGGAGCTGAGAATGACGACTCTTTGTCTTTCGGAAGTGGTGAAGCTGTCTCCGCTCTGGAGAGGAGTCTCCGCCTCACTTTTATGGACGAGCTTATGGAACGAGCTAGAAATCGAGATACTTCAGGTGTTTCTGAGGTTATCTATGACATGATTGCTGCTGGGCTTAGCCCTGGACCTCGTTCTTTCCATGGTTTGGTTGTAGCTCACGCGCTTAACGGCGACGAACAAGGCGCGATGCACTCGCTGAGAAAGGAGCTAGGTGCAGGCCAACGTCCGCTTCCTGAGACTATGATTGCTTTGGTTCGTCTCTCTGGTTCGAAAGGGAATGCTACGAGAGGCCTAGAAATCCTCGCCGCTATGGAAAAGCTTAAGTATGACATTCGTCAAGCTTGGCTCATTCTTGTTGAGGAGCTCATGAGGATCAATCACTTGGAAGATGCGAATAAAGTTTTCTTGAAGGGTGCAAGAGGTGGGATGAGAGCAACAGATCAGCTTTATGATTTGATGATTGAAGAAGATTGCAAAGCTGGAGATCATTCTAATGCCTTAGACATCTCTTACGAAATGGAGGCAGCTGGTAGAATGGCCACAACATTTCATTTCAACTGTCTTCTTAGTGTGCAGGCTACATGTGGGATTCCCGAGGTAGCTTATGCTACATTCGAAAATATGGAGTACGGTGAAGTATTTATGAAGCCTGACACTGAGACATATAACTGGGTGATTCAAGCCTACACTAGAGCCGAGTCATATGATAGGGTTCAGGATGTTGCTGAATTACTTGGAATGATGGTTGAGGACCACAAACGTGTGCAGCCAAATGTGAAGACTTATGCGCTCTTAGTTGAGTGCTTCACCAAATATTGTGTCGTGAAGGAAGCGATTAGACATTTTCGTGCTCTTAAAAACTTTGAAGGAGGAACAGTAATTTTACACAATGCAGGGAATTTTGAGGATCCTCTCTCTTTGTATCTCAGGGCTTTGTGTCGAGAAGGAAGAATTGTTGAGCTTATTGATGCTTTAGATGCAATGCGCAAAGATAACCAACCTATACCTCCAAGAGCCATGATTATGAGCAGAAAGTATCGAACACTAGTCAGCTCATGGATTGAACCATTGCAAGAAGAAGCTGAACTTGGCTATGAGATTGATTATTTAGCGAGGTACATAGAGGAAGGGGGACTTACTGGTGAACGCAAGCGTTGGGTACCTCGAAGAGGGAAAACTCCTTTAGATCCCGATGCTTCTGGTTTTATATACTCAAACCCTATTGAAACATCCTTTAAACAGAGATGCCTTGAAGATTGGAAAGTTCACCATAGGAAGCTCTTGAGAACCTTACAGAGTGAAGGTCTTCCAGTTCTAGGAGATGCATCAGAATCTGATTACATGAGAGTGGTGGAGAGATTACGGAACATAATAAAAGGTCCTGCACTGAATCTTTTGAAGCCGAAAGCAGCAAGCAAGATGGTTGTATCAGAGTTAAAGGAAGAACTCGAAGCTCAGGGTTTGCCAATTGATGGAACAAGAAATGTGCTTTACCAGCGTGTCCAAAAAGCAAGGAGAATAAACAAATCTCGAGGTCGACCTCTTTGGGTTCCTCCAATTGAAGAAGAAGAGGAGGAGGTCGATGAAGAAGTAGACGATTTAATATGTCGAATCAAGCTACATGAAGGAGACACAGAGTTCTGGAAACGTCGGTTTCTTGGAGAAGGCTTGATTGAAACTTCAGTTGAATCCAAGGAAACGACTGAATCAGTGGTTACAGGTGAATCGGAGAAAGCGATTGAAGATATTTCAAAAGAAGCTGACAATGAGGAGGATGATGATGAGGAGGAACAAGAAGGAGATGAGGATGATGATGAAAATGAAGAGGAAGAAGTGGTTGTTCCAGAAACTGAGAATCGAGCAGAAGGAGAAGATTTAGTGAAGAATAAGGCAGCTGACGCGAAGAAGCATCTTCAAATGATTGGAGTCCAACTCTTGAAAGAATCCGATGAAGCAAACAGAACAAAGAAACGTGGGAAGAGGGCATCTCGTATGACACTTGAGGATGATGCAGATGAGGATTGGTTCCCTGAGGAACCATTTGAAGCATTCAAAGAAATGAGGGAAAGAAAAGTGTTCGATGTGGCTGACATGTATACAATAGCAGACGTTTGGGGTTGGACATGGGAGAAGGATTTTAAGAACAAAACTCCAAGGAAATGGTCACAAGAGTGGGAAGTCGAGTTGGCAATTGTGCTCATGACAAAGGTGATTGAATTGGGTGGAATTCCAACGATTGGTGATTGTGCAGTGATATTACGAGCTGCTTTAAGAGCTCCCATGCCTTCAGCCTTCTTGAAGATCTTGCAGACGACACACAGTCTTGGCTACTCATTTGGCAGCCCGTTGTACGATGAGATCATCACATTGTGTTTGGACCTTGGAGAACTTGATGCAGCCATCGCCATAGTTGCAGATATGGAAACCACAGGGATCACTGTCCCTGATCAAACCCTTGACAAGGTCATATCTGCTAGACAATCTAATGAGAGTCCGCGGTCTGAGCCTGAAGAGCCAGCATCAACAGTAAGCTCTTAGTTATCATATCCTCTTCTGCTTGTTGTGAAGTCTCTATAAGAAACAGAAATCGGTAGAAGGAGCTGAATCTGTCTTAGTTATGAAAGTTTTGTTCATTATAAGTACAAGTCATGTAGTTCCGAGTGTAGAACAGTTTTTACTAGTGTTGCACCAGGTCCCTCCAGTCTGATACTTAATTCTTTAGTGTTGGATCTTTCTATATAAGAAACGCAAATAGCAAGACGCAGCTGAATTGGTCTTACTAACAAACGTTTTGTTCACGAAAAAGATAGGAAGAAACAAA
CDS Sequence
- >AT3G04260.1
ATGTCACTCTTGTTCCTCAATCCTCCGTTTCCCTCCAATTCAATCCACCCAATTCCTCGTCGTGCCGCCGGAATATCCTCCATTCGATGCTCAATTTCTGCACCGGAGAAGAAACCGAGGAGGAGGAGGAAGCAGAAGCGCGGCGACGGAGCTGAGAATGACGACTCTTTGTCTTTCGGAAGTGGTGAAGCTGTCTCCGCTCTGGAGAGGAGTCTCCGCCTCACTTTTATGGACGAGCTTATGGAACGAGCTAGAAATCGAGATACTTCAGGTGTTTCTGAGGTTATCTATGACATGATTGCTGCTGGGCTTAGCCCTGGACCTCGTTCTTTCCATGGTTTGGTTGTAGCTCACGCGCTTAACGGCGACGAACAAGGCGCGATGCACTCGCTGAGAAAGGAGCTAGGTGCAGGCCAACGTCCGCTTCCTGAGACTATGATTGCTTTGGTTCGTCTCTCTGGTTCGAAAGGGAATGCTACGAGAGGCCTAGAAATCCTCGCCGCTATGGAAAAGCTTAAGTATGACATTCGTCAAGCTTGGCTCATTCTTGTTGAGGAGCTCATGAGGATCAATCACTTGGAAGATGCGAATAAAGTTTTCTTGAAGGGTGCAAGAGGTGGGATGAGAGCAACAGATCAGCTTTATGATTTGATGATTGAAGAAGATTGCAAAGCTGGAGATCATTCTAATGCCTTAGACATCTCTTACGAAATGGAGGCAGCTGGTAGAATGGCCACAACATTTCATTTCAACTGTCTTCTTAGTGTGCAGGCTACATGTGGGATTCCCGAGGTAGCTTATGCTACATTCGAAAATATGGAGTACGGTGAAGTATTTATGAAGCCTGACACTGAGACATATAACTGGGTGATTCAAGCCTACACTAGAGCCGAGTCATATGATAGGGTTCAGGATGTTGCTGAATTACTTGGAATGATGGTTGAGGACCACAAACGTGTGCAGCCAAATGTGAAGACTTATGCGCTCTTAGTTGAGTGCTTCACCAAATATTGTGTCGTGAAGGAAGCGATTAGACATTTTCGTGCTCTTAAAAACTTTGAAGGAGGAACAGTAATTTTACACAATGCAGGGAATTTTGAGGATCCTCTCTCTTTGTATCTCAGGGCTTTGTGTCGAGAAGGAAGAATTGTTGAGCTTATTGATGCTTTAGATGCAATGCGCAAAGATAACCAACCTATACCTCCAAGAGCCATGATTATGAGCAGAAAGTATCGAACACTAGTCAGCTCATGGATTGAACCATTGCAAGAAGAAGCTGAACTTGGCTATGAGATTGATTATTTAGCGAGGTACATAGAGGAAGGGGGACTTACTGGTGAACGCAAGCGTTGGGTACCTCGAAGAGGGAAAACTCCTTTAGATCCCGATGCTTCTGGTTTTATATACTCAAACCCTATTGAAACATCCTTTAAACAGAGATGCCTTGAAGATTGGAAAGTTCACCATAGGAAGCTCTTGAGAACCTTACAGAGTGAAGGTCTTCCAGTTCTAGGAGATGCATCAGAATCTGATTACATGAGAGTGGTGGAGAGATTACGGAACATAATAAAAGGTCCTGCACTGAATCTTTTGAAGCCGAAAGCAGCAAGCAAGATGGTTGTATCAGAGTTAAAGGAAGAACTCGAAGCTCAGGGTTTGCCAATTGATGGAACAAGAAATGTGCTTTACCAGCGTGTCCAAAAAGCAAGGAGAATAAACAAATCTCGAGGTCGACCTCTTTGGGTTCCTCCAATTGAAGAAGAAGAGGAGGAGGTCGATGAAGAAGTAGACGATTTAATATGTCGAATCAAGCTACATGAAGGAGACACAGAGTTCTGGAAACGTCGGTTTCTTGGAGAAGGCTTGATTGAAACTTCAGTTGAATCCAAGGAAACGACTGAATCAGTGGTTACAGGTGAATCGGAGAAAGCGATTGAAGATATTTCAAAAGAAGCTGACAATGAGGAGGATGATGATGAGGAGGAACAAGAAGGAGATGAGGATGATGATGAAAATGAAGAGGAAGAAGTGGTTGTTCCAGAAACTGAGAATCGAGCAGAAGGAGAAGATTTAGTGAAGAATAAGGCAGCTGACGCGAAGAAGCATCTTCAAATGATTGGAGTCCAACTCTTGAAAGAATCCGATGAAGCAAACAGAACAAAGAAACGTGGGAAGAGGGCATCTCGTATGACACTTGAGGATGATGCAGATGAGGATTGGTTCCCTGAGGAACCATTTGAAGCATTCAAAGAAATGAGGGAAAGAAAAGTGTTCGATGTGGCTGACATGTATACAATAGCAGACGTTTGGGGTTGGACATGGGAGAAGGATTTTAAGAACAAAACTCCAAGGAAATGGTCACAAGAGTGGGAAGTCGAGTTGGCAATTGTGCTCATGACAAAGGTGATTGAATTGGGTGGAATTCCAACGATTGGTGATTGTGCAGTGATATTACGAGCTGCTTTAAGAGCTCCCATGCCTTCAGCCTTCTTGAAGATCTTGCAGACGACACACAGTCTTGGCTACTCATTTGGCAGCCCGTTGTACGATGAGATCATCACATTGTGTTTGGACCTTGGAGAACTTGATGCAGCCATCGCCATAGTTGCAGATATGGAAACCACAGGGATCACTGTCCCTGATCAAACCCTTGACAAGGTCATATCTGCTAGACAATCTAATGAGAGTCCGCGGTCTGAGCCTGAAGAGCCAGCATCAACAGTAAGCTCTTAG
Protein Sequence
- >AT3G04260.1
MSLLFLNPPFPSNSIHPIPRRAAGISSIRCSISAPEKKPRRRRKQKRGDGAENDDSLSFGSGEAVSALERSLRLTFMDELMERARNRDTSGVSEVIYDMIAAGLSPGPRSFHGLVVAHALNGDEQGAMHSLRKELGAGQRPLPETMIALVRLSGSKGNATRGLEILAAMEKLKYDIRQAWLILVEELMRINHLEDANKVFLKGARGGMRATDQLYDLMIEEDCKAGDHSNALDISYEMEAAGRMATTFHFNCLLSVQATCGIPEVAYATFENMEYGEVFMKPDTETYNWVIQAYTRAESYDRVQDVAELLGMMVEDHKRVQPNVKTYALLVECFTKYCVVKEAIRHFRALKNFEGGTVILHNAGNFEDPLSLYLRALCREGRIVELIDALDAMRKDNQPIPPRAMIMSRKYRTLVSSWIEPLQEEAELGYEIDYLARYIEEGGLTGERKRWVPRRGKTPLDPDASGFIYSNPIETSFKQRCLEDWKVHHRKLLRTLQSEGLPVLGDASESDYMRVVERLRNIIKGPALNLLKPKAASKMVVSELKEELEAQGLPIDGTRNVLYQRVQKARRINKSRGRPLWVPPIEEEEEEVDEEVDDLICRIKLHEGDTEFWKRRFLGEGLIETSVESKETTESVVTGESEKAIEDISKEADNEEDDDEEEQEGDEDDDENEEEEVVVPETENRAEGEDLVKNKAADAKKHLQMIGVQLLKESDEANRTKKRGKRASRMTLEDDADEDWFPEEPFEAFKEMRERKVFDVADMYTIADVWGWTWEKDFKNKTPRKWSQEWEVELAIVLMTKVIELGGIPTIGDCAVILRAALRAPMPSAFLKILQTTHSLGYSFGSPLYDEIITLCLDLGELDAAIAIVADMETTGITVPDQTLDKVISARQSNESPRSEPEEPASTVSS